Wall clock time and date at job start Fri Apr 10 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47387 * 2 1 4 4 C 1.53006 * 109.46942 * 240.00238 * 2 1 3 5 5 O 1.45204 * 109.47147 * 120.00396 * 2 1 3 6 6 C 1.34640 * 116.99801 * 60.00163 * 5 2 1 7 7 O 1.21511 * 119.99978 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99847 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00042 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.90742 * 23.74973 * 9 8 6 11 11 C 1.53787 * 113.61128 * 154.99929 * 9 8 6 12 12 C 1.53784 * 87.07923 * 139.98386 * 11 9 8 13 13 H 1.09004 * 113.61162 * 220.01809 * 12 11 9 14 14 N 1.46499 * 113.61434 * 89.11404 * 12 11 9 15 15 S 1.65595 * 119.99842 * 145.00050 * 14 12 11 16 16 O 1.42109 * 106.40358 * 178.53854 * 15 14 12 17 17 O 1.42099 * 106.40318 * 311.45792 * 15 14 12 18 18 C 1.76205 * 107.22094 * 65.00049 * 15 14 12 19 19 H 1.07996 * 119.99635 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00079 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99882 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99858 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47121 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47325 * 119.99982 * 22 20 18 25 25 H 1.48501 * 109.46866 * 239.99895 * 22 20 18 26 26 C 1.53779 * 87.08045 * 334.56667 * 12 11 9 27 27 H 1.08995 * 109.46763 * 299.99908 * 1 2 3 28 28 H 1.09000 * 109.46816 * 59.99711 * 1 2 3 29 29 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47594 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47464 * 300.00669 * 3 2 1 32 32 H 1.09008 * 109.46836 * 60.00201 * 3 2 1 33 33 H 1.09005 * 109.47142 * 300.00318 * 4 2 1 34 34 H 1.09000 * 109.47324 * 60.00362 * 4 2 1 35 35 H 1.09002 * 109.47230 * 180.02562 * 4 2 1 36 36 H 0.97005 * 119.99829 * 359.97438 * 8 6 5 37 37 H 1.09004 * 113.61202 * 254.53139 * 11 9 8 38 38 H 1.08994 * 113.61447 * 25.43570 * 11 9 8 39 39 H 0.96998 * 120.00234 * 325.00078 * 14 12 11 40 40 H 0.97003 * 119.99463 * 180.02562 * 21 20 18 41 41 H 1.09006 * 113.61307 * 270.88660 * 26 12 11 42 42 H 1.09007 * 113.61642 * 139.98417 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9725 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0672 -2.6656 2.4169 9 6 1.6732 -4.0668 2.5833 10 1 1.4198 -4.5511 1.6403 11 6 2.6461 -4.8813 3.4522 12 6 1.4083 -5.5540 4.0690 13 1 1.4877 -5.7120 5.1446 14 7 0.9704 -6.7513 3.3474 15 16 0.3322 -8.0326 4.1799 16 8 -0.0214 -9.0069 3.2076 17 8 1.2226 -8.2958 5.2556 18 6 -1.1767 -7.4837 4.9057 19 1 -1.5096 -6.4674 4.7555 20 6 -1.9316 -8.3513 5.6661 21 7 -1.5258 -9.5888 5.8493 22 14 -3.5316 -7.7695 6.4349 23 1 -3.7623 -6.3461 6.0802 24 1 -4.6551 -8.5956 5.9248 25 1 -3.4488 -7.9040 7.9115 26 6 0.6268 -4.2854 3.6888 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 2.6268 -2.2367 3.0832 37 1 3.2750 -5.5640 2.8808 38 1 3.2117 -4.2751 4.1598 39 1 1.0543 -6.7936 2.3819 40 1 -2.0572 -10.1992 6.3840 41 1 0.6404 -3.5162 4.4611 42 1 -0.3747 -4.4870 3.3084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:58 Heat of formation + Delta-G solvation = -189.513891 kcal Electronic energy + Delta-G solvation = -25485.644697 eV Core-core repulsion = 21591.547411 eV Total energy + Delta-G solvation = -3894.097286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84798 -40.36953 -37.96744 -37.33942 -36.10592 -35.52823 -35.16492 -34.60631 -32.43176 -28.33839 -28.26338 -28.23536 -26.62206 -25.75930 -23.12150 -21.38290 -20.98541 -20.58039 -19.41866 -19.12598 -18.30461 -17.63859 -17.13809 -17.07442 -16.80806 -16.42294 -15.89703 -15.76232 -15.48594 -15.33932 -14.68779 -14.48253 -14.11141 -13.93175 -13.54467 -13.45815 -13.31062 -13.15204 -13.09819 -13.01590 -12.87523 -12.82982 -12.53749 -12.47881 -12.40818 -12.33369 -12.27650 -12.12298 -11.93950 -11.49566 -11.35498 -11.24393 -11.06708 -10.91738 -10.20581 -10.03915 -8.73114 -7.44313 0.38105 1.21587 1.34152 1.35892 1.52813 1.78759 2.22296 2.60603 2.98413 3.21517 3.45869 3.63450 3.74872 3.78578 3.83175 3.97046 3.97958 4.08253 4.45123 4.51057 4.61990 4.63823 4.69077 4.79130 4.79180 4.81794 4.86634 4.91057 4.97158 4.99068 5.13528 5.14482 5.25046 5.31096 5.32292 5.39515 5.57837 5.65338 5.95474 6.38713 6.49199 6.82208 7.40753 8.23409 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.002912 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.071591 B = 9611.772281 C =10247.112293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.685 5.685 9 C 0.143 3.857 10 H 0.102 0.898 11 C -0.133 4.133 12 C 0.121 3.879 13 H 0.105 0.895 14 N -1.104 6.104 15 S 2.724 3.276 16 O -1.047 7.047 17 O -1.039 7.039 18 C -1.034 5.034 19 H 0.120 0.880 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.988 3.012 23 H -0.248 1.248 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.165 4.165 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.414 0.586 40 H 0.298 0.702 41 H 0.116 0.884 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 23.549 -7.826 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.487 6.487 8 N -0.344 5.344 9 C 0.039 3.961 10 H 0.120 0.880 11 C -0.173 4.173 12 C 0.012 3.988 13 H 0.123 0.877 14 N -0.861 5.861 15 S 2.825 3.175 16 O -1.038 7.038 17 O -1.029 7.029 18 C -1.168 5.168 19 H 0.138 0.862 20 C -0.142 4.142 21 N -0.526 5.526 22 Si 0.807 3.193 23 H -0.171 1.171 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.258 0.742 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.247 0.753 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.467 22.322 -7.979 24.853 hybrid contribution -1.080 0.103 0.196 1.103 sum 6.387 22.425 -7.783 24.581 Atomic orbital electron populations 1.22484 0.94332 1.03529 1.03533 1.22392 0.94347 0.92833 0.81578 1.21876 1.02504 0.90476 1.04300 1.22479 1.01705 1.02148 0.97429 1.86308 1.71547 1.23012 1.47327 1.18411 0.78648 0.80868 0.82468 1.90910 1.42227 1.71016 1.44594 1.44703 1.54806 1.11838 1.23037 1.22519 0.96308 0.78760 0.98548 0.88001 1.23769 0.96156 0.98231 0.99098 1.21505 0.96412 0.83947 0.96924 0.87718 1.55216 1.80084 1.32006 1.18769 0.99799 0.74753 0.71136 0.71849 1.93317 1.85854 1.60729 1.63853 1.93310 1.68257 1.84533 1.56765 1.30932 1.29755 1.09075 1.47024 0.86169 1.25970 1.02679 0.93155 0.92422 1.69998 1.40793 1.06323 1.35523 0.85122 0.75681 0.80032 0.78452 1.17104 1.18819 1.18280 1.24074 0.99121 0.97995 0.99384 0.91945 0.89208 0.92287 0.90998 0.88111 0.91155 0.92222 0.89228 0.91747 0.74221 0.89443 0.85054 0.75266 0.89216 0.86534 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 2 C 0.12 2.19 1.13 -10.79 -0.01 2.18 16 3 C -0.13 -1.43 8.85 71.98 0.64 -0.80 16 4 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 5 O -0.37 -7.80 9.94 -55.50 -0.55 -8.35 16 6 C 0.64 15.94 8.06 129.79 1.05 16.98 16 7 O -0.60 -18.50 11.48 19.81 0.23 -18.28 16 8 N -0.68 -13.54 5.36 -567.60 -3.04 -16.58 16 9 C 0.14 3.27 4.06 45.52 0.18 3.45 16 10 H 0.10 2.74 7.43 -2.39 -0.02 2.72 16 11 C -0.13 -2.74 7.62 31.12 0.24 -2.50 16 12 C 0.12 3.61 4.51 45.52 0.21 3.81 16 13 H 0.10 3.33 7.77 -2.39 -0.02 3.31 16 14 N -1.10 -41.40 5.73 -167.19 -0.96 -42.36 16 15 S 2.72 142.87 4.99 -56.49 -0.28 142.59 16 16 O -1.05 -62.42 18.02 -128.00 -2.31 -64.72 16 17 O -1.04 -60.09 17.54 -128.00 -2.25 -62.33 16 18 C -1.03 -55.73 9.72 67.73 0.66 -55.07 16 19 H 0.12 5.84 7.81 -2.91 -0.02 5.82 16 20 C 0.07 3.88 5.46 84.65 0.46 4.34 16 21 N -0.89 -53.13 13.19 21.45 0.28 -52.85 16 22 Si 0.99 41.16 29.54 68.60 2.03 43.18 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.16 -4.22 7.68 31.12 0.24 -3.98 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 1.45 5.88 -2.38 -0.01 1.43 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.42 5.68 8.84 -92.70 -0.82 4.86 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 1.82 8.12 -2.39 -0.02 1.80 16 39 H 0.41 13.69 8.78 -96.75 -0.85 12.84 16 40 H 0.30 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -80.28 361.18 -2.60 -82.88 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.62 Total: 33.75 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 4.86 Total: -36.93 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.72 Total: -111.79 kcal Atomic # 8 Polarization: -148.81 SS G_CDS: -4.88 Total: -153.69 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 142.87 SS G_CDS: -0.28 Total: 142.59 kcal Total: -80.28 -2.60 -82.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.630 kcal (2) G-P(sol) polarization free energy of solvation -80.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds