Wall clock time and date at job start Fri Apr 10 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45196 * 109.47346 * 2 1 4 4 C 1.34226 * 117.00215 * 184.77678 * 3 2 1 5 5 O 1.20823 * 120.00315 * 4.83989 * 4 3 2 6 6 C 1.50705 * 119.99988 * 184.56180 * 4 3 2 7 7 N 1.46503 * 109.52146 * 37.38943 * 6 4 3 8 8 S 1.65595 * 120.00192 * 57.92615 * 7 6 4 9 9 O 1.42099 * 106.40234 * 180.89445 * 8 7 6 10 10 O 1.42101 * 106.40257 * 313.81647 * 8 7 6 11 11 C 1.76209 * 107.21939 * 67.35303 * 8 7 6 12 12 H 1.08003 * 119.99754 * 4.54834 * 11 8 7 13 13 C 1.37873 * 120.00241 * 184.54262 * 11 8 7 14 14 N 1.31514 * 120.00013 * 5.02827 * 13 11 8 15 15 Si 1.86799 * 120.00050 * 185.02674 * 13 11 8 16 16 H 1.48498 * 109.46849 * 5.00477 * 15 13 11 17 17 H 1.48498 * 109.47118 * 125.00683 * 15 13 11 18 18 H 1.48498 * 109.46696 * 245.00354 * 15 13 11 19 19 C 1.53112 * 109.52434 * 277.19590 * 6 4 3 20 20 C 1.53039 * 109.27745 * 182.43996 * 19 6 4 21 21 N 1.46849 * 109.52232 * 59.18132 * 20 19 6 22 22 C 1.46899 * 110.99896 * 174.15838 * 21 20 19 23 23 C 1.46838 * 111.19792 * 298.25682 * 21 20 19 24 24 C 1.53032 * 109.52533 * 61.74207 * 23 21 20 25 25 H 1.08999 * 109.47557 * 184.97181 * 1 2 3 26 26 H 1.09004 * 109.47320 * 304.96499 * 1 2 3 27 27 H 1.08994 * 109.47617 * 64.96270 * 1 2 3 28 28 H 1.09007 * 109.47278 * 240.00259 * 2 1 3 29 29 H 1.08998 * 109.47593 * 120.00253 * 2 1 3 30 30 H 0.96995 * 119.99503 * 237.92423 * 7 6 4 31 31 H 0.96998 * 120.00364 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.50653 * 302.38324 * 19 6 4 33 33 H 1.09001 * 109.50340 * 62.50082 * 19 6 4 34 34 H 1.08997 * 109.46666 * 299.16406 * 20 19 6 35 35 H 1.08999 * 109.45174 * 179.19073 * 20 19 6 36 36 H 1.09000 * 109.47151 * 184.21193 * 22 21 20 37 37 H 1.09004 * 109.47081 * 304.21072 * 22 21 20 38 38 H 1.08999 * 109.47086 * 64.21002 * 22 21 20 39 39 H 1.08999 * 109.46451 * 301.72501 * 23 21 20 40 40 H 1.08997 * 109.45811 * 181.75437 * 23 21 20 41 41 H 1.08997 * 109.50643 * 180.87862 * 24 23 21 42 42 H 1.09004 * 109.53999 * 60.78307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3407 1.5462 -0.0996 5 8 4.0661 0.5953 -0.2718 6 6 3.9252 2.9319 -0.0029 7 7 3.1827 3.7079 0.9936 8 16 3.0755 3.1645 2.5542 9 8 2.2851 4.1141 3.2562 10 8 2.7460 1.7844 2.4768 11 6 4.6923 3.2518 3.2492 12 1 5.5025 3.6823 2.6794 13 6 4.9232 2.7707 4.5205 14 7 3.9619 2.1578 5.1762 15 14 6.6012 2.9893 5.3115 16 1 7.4635 3.8103 4.4241 17 1 6.4460 3.6723 6.6209 18 1 7.2280 1.6591 5.5183 19 6 3.8310 3.6233 -1.3658 20 6 4.4805 5.0061 -1.2768 21 7 5.8862 4.8632 -0.8765 22 6 6.5787 6.1581 -0.9149 23 6 6.0001 4.2446 0.4503 24 6 5.3959 2.8391 0.4130 25 1 -0.3634 -1.0238 0.0891 26 1 -0.3634 0.5889 0.8422 27 1 -0.3634 0.4349 -0.9310 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.7541 4.5399 0.7392 31 1 4.1242 1.8197 6.0708 32 1 4.3503 3.0247 -2.1142 33 1 2.7836 3.7307 -1.6477 34 1 3.9521 5.6088 -0.5382 35 1 4.4278 5.4952 -2.2495 36 1 7.6346 6.0123 -0.6868 37 1 6.4786 6.5943 -1.9088 38 1 6.1369 6.8284 -0.1777 39 1 5.4646 4.8508 1.1809 40 1 7.0511 4.1807 0.7321 41 1 5.4666 2.3861 1.4019 42 1 5.9398 2.2275 -0.3070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:05 Heat of formation + Delta-G solvation = -166.023520 kcal Electronic energy + Delta-G solvation = -28041.229845 eV Core-core repulsion = 24148.151178 eV Total energy + Delta-G solvation = -3893.078667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.43556 -38.64187 -36.03371 -35.31220 -34.80049 -33.98359 -33.18168 -31.25866 -30.90862 -30.31911 -26.86287 -26.16623 -23.91567 -23.13763 -22.41013 -20.74228 -19.47641 -18.82635 -17.72722 -17.04660 -16.63694 -16.20164 -15.81784 -15.56031 -15.04627 -14.84552 -14.60050 -14.09525 -13.90912 -13.62346 -13.35451 -13.26579 -13.06267 -12.62894 -12.40089 -12.32470 -12.04821 -11.64885 -11.56278 -11.45367 -11.29448 -11.20616 -11.10524 -10.89570 -10.85285 -10.61449 -10.54950 -10.37345 -10.27933 -10.17343 -9.95448 -9.83306 -9.28020 -9.03630 -8.65531 -8.14367 -6.73778 -5.34978 2.22314 2.74218 3.03178 3.11979 3.17071 3.23279 4.01147 4.06348 4.55394 4.60285 4.77943 4.83958 5.06548 5.24268 5.31873 5.34732 5.42594 5.47678 5.53591 5.61605 5.68324 5.73178 5.78001 5.82889 5.90196 5.92405 6.00164 6.06105 6.18615 6.21533 6.23368 6.29432 6.49648 6.62580 6.80962 7.06087 7.16517 7.19290 7.29689 7.73476 7.91542 8.36030 8.84776 10.19771 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.008454 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.310951 B = 3311.369521 C = 5062.118229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.338 6.338 4 C 0.472 3.528 5 O -0.508 6.508 6 C 0.207 3.793 7 N -1.121 6.121 8 S 2.707 3.293 9 O -1.009 7.009 10 O -0.987 6.987 11 C -1.027 5.027 12 H 0.114 0.886 13 C 0.136 3.864 14 N -0.839 5.839 15 Si 0.915 3.085 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.111 4.111 20 C 0.058 3.942 21 N -0.545 5.545 22 C 0.025 3.975 23 C 0.057 3.943 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.406 0.594 31 H 0.290 0.710 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 3.513 -12.326 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 O -0.254 6.254 4 C 0.313 3.687 5 O -0.395 6.395 6 C 0.115 3.885 7 N -0.875 5.875 8 S 2.807 3.193 9 O -1.000 7.000 10 O -0.977 6.977 11 C -1.160 5.160 12 H 0.132 0.868 13 C -0.083 4.083 14 N -0.468 5.468 15 Si 0.739 3.261 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.150 4.150 20 C -0.070 4.070 21 N -0.270 5.270 22 C -0.123 4.123 23 C -0.070 4.070 24 C -0.179 4.179 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.238 0.762 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.230 2.306 -12.118 12.338 hybrid contribution 0.884 0.911 1.017 1.626 sum 1.115 3.217 -11.101 11.612 Atomic orbital electron populations 1.21772 0.93453 1.02482 1.03021 1.22893 0.94709 0.80928 1.02253 1.86424 1.24376 1.31730 1.82883 1.23737 0.80996 0.91982 0.71980 1.90587 1.60934 1.42718 1.45302 1.19755 0.91930 0.85303 0.91490 1.56250 1.67868 1.35219 1.28207 1.00746 0.76317 0.72805 0.69478 1.93380 1.71989 1.64428 1.70168 1.93371 1.85595 1.34208 1.84510 1.30862 1.19585 1.54430 1.11103 0.86824 1.24719 0.98933 0.89409 0.95243 1.69929 1.33510 1.29784 1.13619 0.86205 0.81619 0.79060 0.79226 1.18418 1.19702 1.19536 1.21814 1.01861 0.96785 0.94513 1.22033 0.88391 0.95923 1.00641 1.62001 1.13316 1.23032 1.28602 1.22329 0.99201 0.89843 1.00933 1.22143 1.01280 0.94944 0.88629 1.22368 0.91345 0.97834 1.06328 0.90785 0.91135 0.92273 0.92221 0.90474 0.76227 0.89987 0.89373 0.89919 0.93972 0.90317 0.91411 0.91690 0.95514 0.92780 0.90184 0.86575 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.29 37.15 0.38 -1.66 16 2 C 0.07 1.15 6.28 37.15 0.23 1.39 16 3 O -0.34 -6.75 8.74 -45.90 -0.40 -7.15 16 4 C 0.47 9.70 4.96 36.01 0.18 9.88 16 5 O -0.51 -11.27 15.68 -18.75 -0.29 -11.57 16 6 C 0.21 3.73 0.70 -132.85 -0.09 3.63 16 7 N -1.12 -21.75 4.42 -0.30 0.00 -21.75 16 8 S 2.71 69.58 4.93 -107.50 -0.53 69.05 16 9 O -1.01 -28.94 18.02 -57.17 -1.03 -29.97 16 10 O -0.99 -27.65 14.57 -65.44 -0.95 -28.60 16 11 C -1.03 -26.69 7.42 30.60 0.23 -26.46 16 12 H 0.11 2.64 4.20 -52.48 -0.22 2.42 16 13 C 0.14 3.65 5.46 -17.82 -0.10 3.55 16 14 N -0.84 -24.04 13.04 55.43 0.72 -23.32 16 15 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.11 -1.50 4.92 -26.65 -0.13 -1.63 16 20 C 0.06 0.71 5.30 -3.83 -0.02 0.69 16 21 N -0.54 -7.27 4.91 -242.97 -1.19 -8.47 16 22 C 0.03 0.28 9.59 60.06 0.58 0.85 16 23 C 0.06 0.91 4.27 -3.84 -0.02 0.89 16 24 C -0.14 -2.56 3.89 -26.65 -0.10 -2.66 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.41 6.69 7.55 -34.47 -0.26 6.43 16 31 H 0.29 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.52 6.98 -51.93 -0.36 0.16 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.05 0.93 6.58 -51.93 -0.34 0.59 16 40 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.12 2.48 5.08 -51.93 -0.26 2.22 16 42 H 0.09 1.57 7.80 -51.93 -0.41 1.16 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -34.70 342.16 -8.46 -43.15 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.05 Total: 10.00 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 1.14 Total: -11.53 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.47 Total: -53.54 kcal Atomic # 8 Polarization: -74.61 SS G_CDS: -2.68 Total: -77.29 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 69.58 SS G_CDS: -0.53 Total: 69.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.70 -8.46 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.870 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds