Wall clock time and date at job start Fri Apr 10 2020 18:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45196 * 109.47346 * 2 1 4 4 C 1.34226 * 117.00215 * 184.77678 * 3 2 1 5 5 O 1.20823 * 120.00315 * 4.83989 * 4 3 2 6 6 C 1.50705 * 119.99988 * 184.56180 * 4 3 2 7 7 N 1.46503 * 109.52146 * 37.38943 * 6 4 3 8 8 S 1.65595 * 120.00192 * 57.92615 * 7 6 4 9 9 O 1.42099 * 106.40234 * 180.89445 * 8 7 6 10 10 O 1.42101 * 106.40257 * 313.81647 * 8 7 6 11 11 C 1.76209 * 107.21939 * 67.35303 * 8 7 6 12 12 H 1.08003 * 119.99754 * 4.54834 * 11 8 7 13 13 C 1.37873 * 120.00241 * 184.54262 * 11 8 7 14 14 N 1.31514 * 120.00013 * 5.02827 * 13 11 8 15 15 Si 1.86799 * 120.00050 * 185.02674 * 13 11 8 16 16 H 1.48498 * 109.46849 * 5.00477 * 15 13 11 17 17 H 1.48498 * 109.47118 * 125.00683 * 15 13 11 18 18 H 1.48498 * 109.46696 * 245.00354 * 15 13 11 19 19 C 1.53112 * 109.52434 * 277.19590 * 6 4 3 20 20 C 1.53039 * 109.27745 * 182.43996 * 19 6 4 21 21 N 1.46849 * 109.52232 * 59.18132 * 20 19 6 22 22 C 1.46899 * 110.99896 * 174.15838 * 21 20 19 23 23 C 1.46838 * 111.19792 * 298.25682 * 21 20 19 24 24 C 1.53032 * 109.52533 * 61.74207 * 23 21 20 25 25 H 1.08999 * 109.47557 * 184.97181 * 1 2 3 26 26 H 1.09004 * 109.47320 * 304.96499 * 1 2 3 27 27 H 1.08994 * 109.47617 * 64.96270 * 1 2 3 28 28 H 1.09007 * 109.47278 * 240.00259 * 2 1 3 29 29 H 1.08998 * 109.47593 * 120.00253 * 2 1 3 30 30 H 0.96995 * 119.99503 * 237.92423 * 7 6 4 31 31 H 0.96998 * 120.00364 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.50653 * 302.38324 * 19 6 4 33 33 H 1.09001 * 109.50340 * 62.50082 * 19 6 4 34 34 H 1.08997 * 109.46666 * 299.16406 * 20 19 6 35 35 H 1.08999 * 109.45174 * 179.19073 * 20 19 6 36 36 H 1.09000 * 109.47151 * 184.21193 * 22 21 20 37 37 H 1.09004 * 109.47081 * 304.21072 * 22 21 20 38 38 H 1.08999 * 109.47086 * 64.21002 * 22 21 20 39 39 H 1.08999 * 109.46451 * 301.72501 * 23 21 20 40 40 H 1.08997 * 109.45811 * 181.75437 * 23 21 20 41 41 H 1.08997 * 109.50643 * 180.87862 * 24 23 21 42 42 H 1.09004 * 109.53999 * 60.78307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3407 1.5462 -0.0996 5 8 4.0661 0.5953 -0.2718 6 6 3.9252 2.9319 -0.0029 7 7 3.1827 3.7079 0.9936 8 16 3.0755 3.1645 2.5542 9 8 2.2851 4.1141 3.2562 10 8 2.7460 1.7844 2.4768 11 6 4.6923 3.2518 3.2492 12 1 5.5025 3.6823 2.6794 13 6 4.9232 2.7707 4.5205 14 7 3.9619 2.1578 5.1762 15 14 6.6012 2.9893 5.3115 16 1 7.4635 3.8103 4.4241 17 1 6.4460 3.6723 6.6209 18 1 7.2280 1.6591 5.5183 19 6 3.8310 3.6233 -1.3658 20 6 4.4805 5.0061 -1.2768 21 7 5.8862 4.8632 -0.8765 22 6 6.5787 6.1581 -0.9149 23 6 6.0001 4.2446 0.4503 24 6 5.3959 2.8391 0.4130 25 1 -0.3634 -1.0238 0.0891 26 1 -0.3634 0.5889 0.8422 27 1 -0.3634 0.4349 -0.9310 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.7541 4.5399 0.7392 31 1 4.1242 1.8197 6.0708 32 1 4.3503 3.0247 -2.1142 33 1 2.7836 3.7307 -1.6477 34 1 3.9521 5.6088 -0.5382 35 1 4.4278 5.4952 -2.2495 36 1 7.6346 6.0123 -0.6868 37 1 6.4786 6.5943 -1.9088 38 1 6.1369 6.8284 -0.1777 39 1 5.4646 4.8508 1.1809 40 1 7.0511 4.1807 0.7321 41 1 5.4666 2.3861 1.4019 42 1 5.9398 2.2275 -0.3070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:01 Heat of formation + Delta-G solvation = -194.104459 kcal Electronic energy + Delta-G solvation = -28042.447526 eV Core-core repulsion = 24148.151178 eV Total energy + Delta-G solvation = -3894.296348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92765 -39.95649 -37.57019 -37.41600 -36.21885 -36.10993 -35.20280 -32.54680 -32.09577 -31.77135 -28.29519 -27.94304 -25.13180 -24.32505 -23.66268 -22.15297 -21.13824 -20.57056 -19.42041 -18.69801 -18.47855 -17.71824 -17.40375 -17.06630 -16.84399 -15.99035 -15.93949 -15.77155 -15.59469 -15.10146 -14.77545 -14.71144 -14.34948 -14.04841 -13.87690 -13.59982 -13.47013 -13.04822 -12.93672 -12.84496 -12.75220 -12.61203 -12.49410 -12.44311 -12.40511 -12.27487 -12.22297 -12.20516 -12.06774 -11.84242 -11.43333 -11.31534 -11.18829 -10.89913 -10.40257 -9.20328 -8.74480 -7.43230 0.27098 1.14962 1.31788 1.33767 1.49751 1.77939 2.19698 2.58906 2.81558 3.04016 3.47262 3.55199 3.71616 3.76826 4.03624 4.13780 4.15995 4.17257 4.36658 4.39609 4.40574 4.55300 4.57671 4.67937 4.73947 4.78580 4.81814 4.93644 4.95105 4.97009 5.08519 5.12024 5.13223 5.15791 5.29689 5.32802 5.55383 5.91069 6.12440 6.19862 6.22220 6.77418 6.80483 8.21447 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.008454 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.310951 B = 3311.369521 C = 5062.118229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 O -0.348 6.348 4 C 0.462 3.538 5 O -0.534 6.534 6 C 0.203 3.797 7 N -1.102 6.102 8 S 2.709 3.291 9 O -1.047 7.047 10 O -1.020 7.020 11 C -1.035 5.035 12 H 0.137 0.863 13 C 0.075 3.925 14 N -0.890 5.890 15 Si 0.978 3.022 16 H -0.239 1.239 17 H -0.263 1.263 18 H -0.264 1.264 19 C -0.104 4.104 20 C 0.056 3.944 21 N -0.547 5.547 22 C 0.023 3.977 23 C 0.063 3.937 24 C -0.140 4.140 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.421 0.579 31 H 0.296 0.704 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 5.063 -14.421 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 O -0.263 6.263 4 C 0.304 3.696 5 O -0.423 6.423 6 C 0.112 3.888 7 N -0.862 5.862 8 S 2.810 3.190 9 O -1.038 7.038 10 O -1.010 7.010 11 C -1.168 5.168 12 H 0.154 0.846 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.797 3.203 16 H -0.161 1.161 17 H -0.187 1.187 18 H -0.189 1.189 19 C -0.143 4.143 20 C -0.072 4.072 21 N -0.271 5.271 22 C -0.124 4.124 23 C -0.065 4.065 24 C -0.179 4.179 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.256 0.744 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.411 3.885 -14.234 14.822 hybrid contribution 0.463 0.381 1.572 1.683 sum 1.875 4.266 -12.661 13.492 Atomic orbital electron populations 1.21800 0.90388 1.04253 1.03481 1.23171 0.97229 0.79912 1.01537 1.86426 1.24208 1.33134 1.82549 1.24372 0.81110 0.92859 0.71209 1.90557 1.61403 1.43713 1.46647 1.20066 0.91113 0.84280 0.93391 1.55576 1.68201 1.35853 1.26558 1.00308 0.76282 0.71889 0.70515 1.93319 1.73131 1.65104 1.72202 1.93331 1.86122 1.35981 1.85520 1.31178 1.20151 1.54004 1.11504 0.84574 1.25909 1.03224 0.88733 0.95976 1.70031 1.36101 1.31520 1.14492 0.85257 0.76616 0.79655 0.78760 1.16133 1.18743 1.18878 1.21904 1.03690 0.97317 0.91411 1.22177 0.87553 0.94966 1.02468 1.62007 1.14247 1.24473 1.26410 1.22431 0.99145 0.88512 1.02338 1.22011 1.01209 0.93295 0.90014 1.22295 0.91883 0.99434 1.04290 0.87953 0.92974 0.89840 0.90374 0.93778 0.74381 0.89430 0.88342 0.87900 0.94050 0.86789 0.90920 0.89284 0.95725 0.94358 0.89383 0.90250 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 10.29 71.98 0.74 -3.02 16 2 C 0.06 1.95 6.28 71.98 0.45 2.40 16 3 O -0.35 -14.03 8.74 -45.02 -0.39 -14.43 16 4 C 0.46 19.17 4.96 71.24 0.35 19.52 16 5 O -0.53 -24.19 15.68 21.97 0.34 -23.85 16 6 C 0.20 7.16 0.70 2.94 0.00 7.16 16 7 N -1.10 -42.66 4.42 -154.86 -0.68 -43.34 16 8 S 2.71 143.18 4.93 -56.49 -0.28 142.90 16 9 O -1.05 -61.85 18.02 -128.00 -2.31 -64.16 16 10 O -1.02 -59.68 14.57 -120.10 -1.75 -61.43 16 11 C -1.03 -54.60 7.42 67.73 0.50 -54.10 16 12 H 0.14 6.32 4.20 -2.91 -0.01 6.31 16 13 C 0.07 4.08 5.46 84.65 0.46 4.54 16 14 N -0.89 -52.63 13.04 21.45 0.28 -52.35 16 15 Si 0.98 40.66 29.54 68.60 2.03 42.69 16 16 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 C -0.10 -2.54 4.92 30.64 0.15 -2.39 16 20 C 0.06 1.16 5.30 86.33 0.46 1.62 16 21 N -0.55 -12.87 4.91 -922.62 -4.53 -17.40 16 22 C 0.02 0.43 9.59 127.69 1.22 1.65 16 23 C 0.06 1.88 4.27 86.33 0.37 2.25 16 24 C -0.14 -5.05 3.89 30.65 0.12 -4.93 16 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.42 7.97 -2.38 -0.02 2.40 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.42 13.54 7.55 -96.75 -0.73 12.81 16 31 H 0.30 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 0.88 6.98 -2.39 -0.02 0.87 16 35 H 0.11 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.23 8.09 -2.38 -0.02 1.21 16 38 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.04 1.27 6.58 -2.39 -0.02 1.25 16 40 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 41 H 0.08 3.46 5.08 -2.39 -0.01 3.45 16 42 H 0.10 3.28 7.80 -2.39 -0.02 3.26 16 Total: -1.00 -78.55 342.16 -2.15 -80.70 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.31 Total: 35.97 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.83 Total: -25.30 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.94 Total: -113.10 kcal Atomic # 8 Polarization: -159.76 SS G_CDS: -4.11 Total: -163.86 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 143.18 SS G_CDS: -0.28 Total: 142.90 kcal Total: -78.55 -2.15 -80.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.407 kcal (2) G-P(sol) polarization free energy of solvation -78.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds