Wall clock time and date at job start Fri Apr 10 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46972 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00041 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47029 * 325.00028 * 7 6 4 9 9 C 1.53005 * 109.47006 * 84.99489 * 7 6 4 10 10 C 1.53002 * 109.46865 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47208 * 300.00206 * 10 9 7 12 12 H 1.08999 * 109.46966 * 300.00343 * 11 10 9 13 13 N 1.46500 * 109.47169 * 180.02562 * 11 10 9 14 14 S 1.65608 * 119.99948 * 94.99931 * 13 11 10 15 15 O 1.42097 * 106.39682 * 178.54180 * 14 13 11 16 16 O 1.42098 * 106.40000 * 311.46274 * 14 13 11 17 17 C 1.76199 * 107.21790 * 65.00100 * 14 13 11 18 18 H 1.08002 * 119.99967 * 0.02562 * 17 14 13 19 19 C 1.37869 * 119.99906 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00298 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99939 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47287 * 60.00129 * 21 19 17 23 23 H 1.48498 * 109.47213 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47168 * 299.99663 * 21 19 17 25 25 C 1.52995 * 109.46974 * 60.00034 * 11 10 9 26 26 C 1.52998 * 109.47169 * 204.99758 * 7 6 4 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 31 31 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 32 32 H 0.96996 * 119.99844 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.47355 * 300.00186 * 9 7 6 34 34 H 1.09005 * 109.46786 * 60.00391 * 9 7 6 35 35 H 1.09002 * 109.46682 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47021 * 60.00145 * 10 9 7 37 37 H 0.96999 * 119.99804 * 275.00139 * 13 11 10 38 38 H 0.97000 * 120.00077 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46954 * 179.97438 * 25 11 10 40 40 H 1.08999 * 109.47023 * 60.00343 * 25 11 10 41 41 H 1.08999 * 109.46966 * 300.00193 * 26 7 6 42 42 H 1.08993 * 109.46797 * 60.00090 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7369 2.1813 -0.0014 8 1 6.0330 1.3129 0.5871 9 6 6.2342 2.0169 -1.4390 10 6 7.7594 1.8955 -1.4401 11 6 8.3720 3.1576 -0.8297 12 1 8.0761 4.0262 -1.4181 13 7 9.8324 3.0416 -0.8313 14 16 10.7133 3.6923 -2.0736 15 8 12.0792 3.4462 -1.7687 16 8 10.0944 3.2559 -3.2759 17 6 10.4958 5.4396 -2.0078 18 1 9.8729 5.8778 -1.2421 19 6 11.1209 6.2474 -2.9339 20 7 11.8799 5.7139 -3.8661 21 14 10.8909 8.0999 -2.8638 22 1 11.3771 8.6099 -1.5566 23 1 11.6629 8.7364 -3.9610 24 1 9.4504 8.4260 -3.0176 25 6 7.8746 3.3220 0.6078 26 6 6.3489 3.4438 0.6088 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 3.8592 3.1726 0.0001 33 1 5.7982 1.1174 -1.8737 34 1 5.9381 2.8853 -2.0275 35 1 8.1138 1.7788 -2.4643 36 1 8.0552 1.0270 -0.8517 37 1 10.2833 2.5837 -0.1048 38 1 12.3193 6.2822 -4.5178 39 1 8.3113 4.2209 1.0428 40 1 8.1704 2.4534 1.1962 41 1 6.0527 4.3121 0.0203 42 1 5.9945 3.5608 1.6329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:08 Heat of formation + Delta-G solvation = -190.106726 kcal Electronic energy + Delta-G solvation = -25368.156465 eV Core-core repulsion = 21474.033471 eV Total energy + Delta-G solvation = -3894.122994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.22949 -38.58471 -37.51253 -35.21745 -34.86080 -33.90469 -33.10053 -32.39974 -30.69605 -29.47702 -27.40666 -26.12904 -25.92205 -22.69842 -22.04253 -20.66850 -20.04269 -18.90731 -17.62631 -17.26233 -17.11382 -16.59127 -16.20775 -15.93191 -15.69076 -14.90683 -14.88855 -14.77273 -14.17148 -13.91319 -13.82570 -13.39535 -13.36097 -12.87282 -12.78154 -12.48088 -12.12545 -12.00978 -11.87460 -11.70933 -11.32760 -11.22082 -11.17802 -11.04677 -10.64188 -10.55650 -10.44372 -10.25225 -10.19370 -10.14950 -10.04790 -9.82756 -9.23916 -9.16327 -8.94983 -8.48278 -6.69446 -5.31358 2.37405 2.43005 2.58582 3.06929 3.12120 3.16993 3.74277 4.05620 4.43331 4.64212 4.66592 4.70836 4.73421 4.74385 4.80973 4.92229 4.97121 5.17486 5.23875 5.27655 5.33625 5.51922 5.54781 5.58560 5.75165 5.86395 5.89931 6.01230 6.10983 6.20028 6.32835 6.35695 6.44866 6.57475 6.60687 6.72526 6.95393 7.30817 7.32704 7.92925 7.99871 8.05323 8.89238 10.24686 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.002768 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.187987 B =10112.651041 C =10585.868449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.517 6.517 6 N -0.725 5.725 7 C 0.144 3.856 8 H 0.090 0.910 9 C -0.126 4.126 10 C -0.136 4.136 11 C 0.161 3.839 12 H 0.089 0.911 13 N -1.133 6.133 14 S 2.715 3.285 15 O -1.009 7.009 16 O -1.005 7.005 17 C -1.021 5.021 18 H 0.101 0.899 19 C 0.133 3.867 20 N -0.845 5.845 21 Si 0.919 3.081 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.121 4.121 26 C -0.123 4.123 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.291 0.709 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 -2.506 9.728 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.038 4.038 4 C 0.296 3.704 5 O -0.392 6.392 6 N -0.378 5.378 7 C 0.041 3.959 8 H 0.108 0.892 9 C -0.166 4.166 10 C -0.176 4.176 11 C 0.052 3.948 12 H 0.107 0.893 13 N -0.885 5.885 14 S 2.815 3.185 15 O -1.000 7.000 16 O -0.995 6.995 17 C -1.154 5.154 18 H 0.119 0.881 19 C -0.085 4.085 20 N -0.474 5.474 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.161 4.161 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.510 -3.915 8.789 21.754 hybrid contribution -0.632 2.080 0.558 2.244 sum -20.143 -1.835 9.347 22.282 Atomic orbital electron populations 1.22842 0.80382 1.03365 1.00101 1.88032 1.19770 1.25210 1.95413 1.22265 0.91904 0.87034 1.02587 1.20233 0.88554 0.84812 0.76759 1.90751 1.74527 1.26461 1.47430 1.46006 1.07302 1.08486 1.76006 1.21137 0.77707 0.99501 0.97596 0.89220 1.21894 0.96292 1.02655 0.95729 1.22080 0.93675 0.98500 1.03325 1.20576 0.80252 0.98073 0.95876 0.89296 1.56078 1.14570 1.74343 1.43518 1.00404 0.71443 0.75815 0.70862 1.93371 1.34534 1.87809 1.84247 1.93359 1.77481 1.83832 1.44821 1.30539 1.42799 1.17964 1.24107 0.88100 1.24735 0.90378 1.01691 0.91719 1.69891 1.25057 1.38743 1.13744 0.86223 0.79266 0.81449 0.78718 1.18936 1.20179 1.18924 1.21814 0.93887 1.03072 0.97324 1.21788 0.96133 0.97145 1.01112 0.93764 0.89072 0.93833 0.90184 0.90311 0.76672 0.91379 0.91336 0.89644 0.91723 0.76861 0.89870 0.90436 0.91331 0.90843 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.88 10.24 -55.14 -0.56 -4.45 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.51 5.78 7.87 -10.99 -0.09 5.70 16 5 O -0.52 -8.48 16.16 -14.35 -0.23 -8.71 16 6 N -0.73 -6.49 5.08 -53.80 -0.27 -6.76 16 7 C 0.14 1.59 2.45 -67.93 -0.17 1.42 16 8 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 9 C -0.13 -1.66 5.49 -26.73 -0.15 -1.80 16 10 C -0.14 -2.11 5.53 -26.73 -0.15 -2.25 16 11 C 0.16 2.57 2.65 -67.93 -0.18 2.39 16 12 H 0.09 1.52 7.85 -51.93 -0.41 1.11 16 13 N -1.13 -21.47 5.47 -4.89 -0.03 -21.50 16 14 S 2.72 70.26 4.93 -107.50 -0.53 69.73 16 15 O -1.01 -29.38 18.02 -57.17 -1.03 -30.41 16 16 O -1.01 -28.58 17.28 -57.17 -0.99 -29.57 16 17 C -1.02 -27.25 9.57 30.60 0.29 -26.96 16 18 H 0.10 2.42 7.81 -52.49 -0.41 2.01 16 19 C 0.13 3.64 5.46 -17.82 -0.10 3.55 16 20 N -0.84 -24.64 13.19 55.43 0.73 -23.91 16 21 Si 0.92 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 25 C -0.12 -1.46 5.45 -26.71 -0.15 -1.61 16 26 C -0.12 -1.18 5.40 -26.71 -0.14 -1.33 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 2.22 8.60 -40.82 -0.35 1.87 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.55 7.64 -51.93 -0.40 1.16 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 6.58 8.84 -34.48 -0.30 6.28 16 38 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -38.62 362.86 -8.42 -47.03 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.47 Total: 6.98 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 0.52 Total: -19.04 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.43 Total: -52.17 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -2.81 Total: -73.14 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 70.26 SS G_CDS: -0.53 Total: 69.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.62 -8.42 -47.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.073 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds