Wall clock time and date at job start Fri Apr 10 2020 18:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46972 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00041 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47029 * 325.00028 * 7 6 4 9 9 C 1.53005 * 109.47006 * 84.99489 * 7 6 4 10 10 C 1.53002 * 109.46865 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47208 * 300.00206 * 10 9 7 12 12 H 1.08999 * 109.46966 * 300.00343 * 11 10 9 13 13 N 1.46500 * 109.47169 * 180.02562 * 11 10 9 14 14 S 1.65608 * 119.99948 * 94.99931 * 13 11 10 15 15 O 1.42097 * 106.39682 * 178.54180 * 14 13 11 16 16 O 1.42098 * 106.40000 * 311.46274 * 14 13 11 17 17 C 1.76199 * 107.21790 * 65.00100 * 14 13 11 18 18 H 1.08002 * 119.99967 * 0.02562 * 17 14 13 19 19 C 1.37869 * 119.99906 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00298 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99939 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47287 * 60.00129 * 21 19 17 23 23 H 1.48498 * 109.47213 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47168 * 299.99663 * 21 19 17 25 25 C 1.52995 * 109.46974 * 60.00034 * 11 10 9 26 26 C 1.52998 * 109.47169 * 204.99758 * 7 6 4 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 31 31 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 32 32 H 0.96996 * 119.99844 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.47355 * 300.00186 * 9 7 6 34 34 H 1.09005 * 109.46786 * 60.00391 * 9 7 6 35 35 H 1.09002 * 109.46682 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47021 * 60.00145 * 10 9 7 37 37 H 0.96999 * 119.99804 * 275.00139 * 13 11 10 38 38 H 0.97000 * 120.00077 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46954 * 179.97438 * 25 11 10 40 40 H 1.08999 * 109.47023 * 60.00343 * 25 11 10 41 41 H 1.08999 * 109.46966 * 300.00193 * 26 7 6 42 42 H 1.08993 * 109.46797 * 60.00090 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7369 2.1813 -0.0014 8 1 6.0330 1.3129 0.5871 9 6 6.2342 2.0169 -1.4390 10 6 7.7594 1.8955 -1.4401 11 6 8.3720 3.1576 -0.8297 12 1 8.0761 4.0262 -1.4181 13 7 9.8324 3.0416 -0.8313 14 16 10.7133 3.6923 -2.0736 15 8 12.0792 3.4462 -1.7687 16 8 10.0944 3.2559 -3.2759 17 6 10.4958 5.4396 -2.0078 18 1 9.8729 5.8778 -1.2421 19 6 11.1209 6.2474 -2.9339 20 7 11.8799 5.7139 -3.8661 21 14 10.8909 8.0999 -2.8638 22 1 11.3771 8.6099 -1.5566 23 1 11.6629 8.7364 -3.9610 24 1 9.4504 8.4260 -3.0176 25 6 7.8746 3.3220 0.6078 26 6 6.3489 3.4438 0.6088 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 3.8592 3.1726 0.0001 33 1 5.7982 1.1174 -1.8737 34 1 5.9381 2.8853 -2.0275 35 1 8.1138 1.7788 -2.4643 36 1 8.0552 1.0270 -0.8517 37 1 10.2833 2.5837 -0.1048 38 1 12.3193 6.2822 -4.5178 39 1 8.3113 4.2209 1.0428 40 1 8.1704 2.4534 1.1962 41 1 6.0527 4.3121 0.0203 42 1 5.9945 3.5608 1.6329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:07 Heat of formation + Delta-G solvation = -223.188086 kcal Electronic energy + Delta-G solvation = -25369.590980 eV Core-core repulsion = 21474.033471 eV Total energy + Delta-G solvation = -3895.557509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12022 -39.56108 -38.28655 -37.32367 -36.09915 -36.04562 -35.14438 -33.60150 -31.73303 -30.27293 -28.32879 -28.22423 -26.54501 -23.73882 -23.10966 -21.55759 -21.34387 -20.69540 -19.23109 -18.43918 -18.05930 -17.83988 -17.31979 -17.18415 -16.81660 -16.55011 -15.93819 -15.79251 -15.59466 -15.39379 -15.08732 -14.77887 -14.20973 -13.99743 -13.96987 -13.74613 -13.32552 -13.18128 -13.09398 -13.03547 -12.96168 -12.47227 -12.40583 -12.34874 -12.32458 -12.29209 -12.05543 -12.04039 -11.54852 -11.32103 -11.19841 -10.90100 -10.81169 -10.73205 -10.15299 -10.00632 -8.71769 -7.44466 0.41346 1.37041 1.39157 1.51878 1.60300 1.88594 2.23631 2.61983 3.01318 3.18479 3.67829 3.72319 3.80879 3.86037 4.06734 4.16389 4.24128 4.27787 4.33302 4.39526 4.50689 4.52252 4.52845 4.58224 4.60117 4.74585 4.84905 4.89313 4.94870 5.15637 5.16654 5.21356 5.25185 5.30685 5.44409 5.53970 5.57599 5.94324 6.08458 6.46882 6.62250 6.81744 7.29463 8.24318 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.002768 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.187987 B =10112.651041 C =10585.868449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.044 3.956 4 C 0.505 3.495 5 O -0.578 6.578 6 N -0.707 5.707 7 C 0.150 3.850 8 H 0.073 0.927 9 C -0.120 4.120 10 C -0.135 4.135 11 C 0.152 3.848 12 H 0.079 0.921 13 N -1.117 6.117 14 S 2.717 3.283 15 O -1.051 7.051 16 O -1.042 7.042 17 C -1.034 5.034 18 H 0.125 0.875 19 C 0.067 3.933 20 N -0.897 5.897 21 Si 0.991 3.009 22 H -0.251 1.251 23 H -0.269 1.269 24 H -0.245 1.245 25 C -0.116 4.116 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.420 0.580 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.414 0.586 38 H 0.297 0.703 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.233 0.160 11.748 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.035 4.035 4 C 0.292 3.708 5 O -0.457 6.457 6 N -0.361 5.361 7 C 0.045 3.955 8 H 0.091 0.909 9 C -0.159 4.159 10 C -0.175 4.175 11 C 0.045 3.955 12 H 0.097 0.903 13 N -0.875 5.875 14 S 2.818 3.182 15 O -1.041 7.041 16 O -1.032 7.032 17 C -1.168 5.168 18 H 0.143 0.857 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.809 3.191 22 H -0.174 1.174 23 H -0.194 1.194 24 H -0.169 1.169 25 C -0.156 4.156 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.219 -1.232 10.823 24.745 hybrid contribution 0.163 1.153 -0.068 1.166 sum -22.056 -0.079 10.755 24.539 Atomic orbital electron populations 1.23019 0.78339 1.04033 1.01681 1.87973 1.22120 1.27053 1.95811 1.22415 0.88936 0.86666 1.05463 1.21009 0.90306 0.84177 0.75301 1.90727 1.75840 1.28787 1.50362 1.45803 1.06312 1.09212 1.74730 1.20933 0.79083 0.99941 0.95558 0.90888 1.21812 0.94233 1.02162 0.97709 1.22014 0.95595 0.98760 1.01163 1.20886 0.78069 0.97634 0.98934 0.90333 1.55462 1.15836 1.73881 1.42302 0.99960 0.70841 0.76180 0.71222 1.93303 1.37457 1.88377 1.85008 1.93309 1.77861 1.84423 1.47583 1.30854 1.42996 1.18214 1.24748 0.85681 1.26055 0.89610 1.07891 0.90973 1.70007 1.26615 1.41122 1.15079 0.85145 0.80355 0.74053 0.79514 1.17425 1.19379 1.16890 1.21794 0.95715 1.04071 0.93975 1.21750 0.93899 0.96492 1.03009 0.92330 0.89063 0.91985 0.87439 0.86857 0.74190 0.93041 0.90624 0.93304 0.91260 0.75220 0.89274 0.89435 0.90305 0.89345 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -8.16 10.24 -129.94 -1.33 -9.49 16 3 C 0.04 0.58 6.42 71.24 0.46 1.03 16 4 C 0.51 10.67 7.87 87.66 0.69 11.36 16 5 O -0.58 -19.17 16.16 16.00 0.26 -18.91 16 6 N -0.71 -10.80 5.08 -442.52 -2.25 -13.05 16 7 C 0.15 3.01 2.45 44.99 0.11 3.12 16 8 H 0.07 1.78 7.58 -2.38 -0.02 1.76 16 9 C -0.12 -3.11 5.49 30.60 0.17 -2.94 16 10 C -0.14 -4.29 5.53 30.59 0.17 -4.13 16 11 C 0.15 4.77 2.65 44.99 0.12 4.89 16 12 H 0.08 2.64 7.85 -2.39 -0.02 2.62 16 13 N -1.12 -42.56 5.47 -169.40 -0.93 -43.49 16 14 S 2.72 144.39 4.93 -56.49 -0.28 144.12 16 15 O -1.05 -63.30 18.02 -128.00 -2.31 -65.60 16 16 O -1.04 -61.83 17.28 -128.00 -2.21 -64.04 16 17 C -1.03 -54.99 9.57 67.73 0.65 -54.35 16 18 H 0.13 5.80 7.81 -2.91 -0.02 5.78 16 19 C 0.07 3.67 5.46 84.65 0.46 4.13 16 20 N -0.90 -53.38 13.19 21.44 0.28 -53.10 16 21 Si 0.99 40.00 29.54 68.60 2.03 42.03 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 25 C -0.12 -2.48 5.45 30.61 0.17 -2.31 16 26 C -0.11 -1.76 5.40 30.61 0.17 -1.59 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 32 H 0.42 2.96 8.60 -92.71 -0.80 2.16 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.05 1.89 7.64 -2.39 -0.02 1.87 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 13.55 8.84 -96.74 -0.85 12.69 16 38 H 0.30 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -88.77 362.86 -2.94 -91.71 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.61 Total: 29.10 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.41 Total: -39.27 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -2.89 Total: -109.64 kcal Atomic # 8 Polarization: -152.46 SS G_CDS: -5.59 Total: -158.05 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 144.39 SS G_CDS: -0.28 Total: 144.12 kcal Total: -88.77 -2.94 -91.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.477 kcal (2) G-P(sol) polarization free energy of solvation -88.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds