Wall clock time and date at job start Fri Apr 10 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48504 * 109.47057 * 270.00017 * 3 2 1 5 5 H 1.48502 * 109.46974 * 29.99732 * 3 2 1 6 6 H 1.48500 * 109.47157 * 149.99818 * 3 2 1 7 7 C 1.37880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00497 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99499 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46765 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.46958 * 180.02562 * 10 9 7 12 12 O 1.21291 * 120.00068 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99989 * 179.97438 * 11 10 9 14 14 C 1.47727 * 134.39333 * 179.97438 * 13 11 10 15 15 C 1.53293 * 85.85714 * 155.90742 * 14 13 11 16 16 C 1.52323 * 128.81874 * 243.38314 * 15 14 13 17 17 C 1.52328 * 128.82181 * 163.01258 * 15 14 13 18 18 H 1.09002 * 117.55513 * 225.32123 * 17 15 14 19 19 C 1.50695 * 117.51276 * 10.46137 * 17 15 14 20 20 O 1.21274 * 120.00413 * 0.08469 * 19 17 15 21 21 N 1.34784 * 119.99635 * 179.81427 * 19 17 15 22 22 C 1.38723 * 119.99936 * 179.97438 * 21 19 17 23 23 N 1.30975 * 126.36002 * 0.02590 * 22 21 19 24 24 N 1.28651 * 109.32316 * 179.97438 * 23 22 21 25 25 C 1.30137 * 109.51617 * 359.97438 * 24 23 22 26 26 O 1.34574 * 126.36131 * 179.71061 * 22 21 19 27 27 C 1.47723 * 134.39431 * 359.97438 * 13 11 10 28 28 H 0.97000 * 120.00187 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47299 * 60.00491 * 9 7 2 30 30 H 1.08999 * 109.47196 * 300.00030 * 9 7 2 31 31 H 1.08999 * 109.46953 * 60.00105 * 10 9 7 32 32 H 1.08997 * 109.46652 * 300.00014 * 10 9 7 33 33 H 1.09007 * 113.81136 * 41.67793 * 14 13 11 34 34 H 1.08996 * 113.81492 * 270.14484 * 14 13 11 35 35 H 1.09000 * 117.51841 * 134.66399 * 16 15 14 36 36 H 1.08994 * 117.55823 * 349.51476 * 16 15 14 37 37 H 0.96999 * 120.00044 * 0.02562 * 21 19 17 38 38 H 1.08004 * 126.22218 * 179.97438 * 25 24 23 39 39 H 1.09003 * 113.80845 * 89.86326 * 27 13 11 40 40 H 1.08992 * 113.81507 * 318.32893 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4921 -4.9671 0.0033 12 8 0.2792 -4.9672 0.0024 13 7 2.1660 -6.1342 0.0037 14 6 1.7686 -7.5571 0.0047 15 6 3.1424 -7.8262 -0.6198 16 6 3.4717 -8.3982 -1.9927 17 6 3.9022 -9.1423 -0.7251 18 1 4.9624 -9.1341 -0.4719 19 6 3.1593 -10.4052 -0.3729 20 8 1.9995 -10.3489 -0.0229 21 7 3.7822 -11.5978 -0.4521 22 6 3.0985 -12.7603 -0.1273 23 7 1.8527 -12.8438 0.2681 24 7 1.5548 -14.0774 0.4791 25 6 2.5907 -14.8239 0.2281 26 8 3.5904 -14.0124 -0.1657 27 6 3.5968 -6.5014 0.0033 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8920 31 1 2.8721 -3.6035 0.8927 32 1 2.8721 -3.6050 -0.8873 33 1 0.9325 -7.7810 -0.6579 34 1 1.6482 -7.9797 1.0022 35 1 4.2486 -7.9001 -2.5726 36 1 2.6518 -8.8229 -2.5719 37 1 4.7088 -11.6431 -0.7354 38 1 2.6390 -15.8992 0.3166 39 1 4.0241 -6.6079 1.0004 40 1 4.2080 -5.8898 -0.6603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271767437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:16 Heat of formation + Delta-G solvation = 18.747954 kcal Electronic energy + Delta-G solvation = -25378.608656 eV Core-core repulsion = 21390.391081 eV Total energy + Delta-G solvation = -3988.217575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.23588 -41.96678 -40.79302 -39.19291 -37.27902 -36.44211 -35.65767 -35.55840 -33.03305 -31.44562 -29.48534 -27.54630 -26.89418 -26.48260 -24.98486 -23.91092 -23.36277 -21.75587 -20.61218 -19.88743 -19.37762 -18.76438 -18.60505 -18.45167 -17.86166 -17.53252 -16.96130 -16.71772 -16.44798 -16.22972 -16.10467 -15.63481 -15.49566 -14.86775 -14.36175 -14.06423 -13.95674 -13.82122 -13.52903 -13.27189 -13.03258 -12.87993 -12.80260 -12.68088 -12.46046 -12.03440 -11.96425 -11.93481 -11.79775 -11.62469 -11.33569 -11.27921 -11.26348 -10.61561 -10.56749 -10.04690 -9.71606 -8.17125 -6.32133 0.07128 0.36353 1.13164 1.42954 1.46654 1.56488 1.57595 1.65801 1.84256 2.25475 2.43911 2.70524 2.89498 3.15691 3.31041 3.42494 3.65627 3.68888 3.77385 3.96224 4.01983 4.31861 4.40724 4.51682 4.52445 4.53552 4.57971 4.70924 4.71916 4.85959 4.89858 4.93897 4.96617 5.03043 5.15217 5.49654 5.60970 5.84592 5.91206 6.16592 6.69598 6.74149 6.87151 7.22186 7.36082 7.38472 8.95859 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.043613 B = 0.001932 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.852340 B =14491.400187 C =14930.901245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.011 4.011 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.040 3.960 10 C -0.105 4.105 11 C 0.529 3.471 12 O -0.600 6.600 13 N -0.654 5.654 14 C 0.144 3.856 15 C -0.151 4.151 16 C -0.096 4.096 17 C -0.132 4.132 18 H 0.196 0.804 19 C 0.541 3.459 20 O -0.509 6.509 21 N -0.593 5.593 22 C 0.383 3.617 23 N -0.327 5.327 24 N -0.333 5.333 25 C 0.170 3.830 26 O -0.233 6.233 27 C 0.153 3.847 28 H 0.262 0.738 29 H -0.020 1.020 30 H -0.022 1.022 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.451 0.549 38 H 0.323 0.677 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.709 -31.714 -3.810 39.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.579 4.579 8 H 0.099 0.901 9 C 0.003 3.997 10 C -0.145 4.145 11 C 0.321 3.679 12 O -0.481 6.481 13 N -0.390 5.390 14 C 0.022 3.978 15 C -0.153 4.153 16 C -0.132 4.132 17 C -0.153 4.153 18 H 0.213 0.787 19 C 0.329 3.671 20 O -0.378 6.378 21 N -0.254 5.254 22 C 0.081 3.919 23 N -0.182 5.182 24 N -0.176 5.176 25 C -0.063 4.063 26 O -0.112 6.112 27 C 0.032 3.968 28 H 0.071 0.929 29 H -0.002 1.002 30 H -0.004 1.004 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.175 0.825 36 H 0.111 0.889 37 H 0.294 0.706 38 H 0.337 0.663 39 H 0.134 0.866 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.785 -30.938 -3.220 36.865 hybrid contribution 0.600 0.172 -0.168 0.646 sum 20.385 -30.767 -3.388 37.062 Atomic orbital electron populations 1.70203 1.08511 1.27829 1.51486 1.26220 0.95734 1.04216 0.94597 0.85253 0.78647 0.77331 0.78569 1.19570 1.21406 1.17574 1.21703 0.94119 0.91281 1.50775 0.90117 1.18720 0.93784 0.92779 0.94459 1.21548 0.99058 0.89032 1.04849 1.21219 0.87166 0.85548 0.73983 1.90660 1.17147 1.87808 1.52496 1.50149 1.11124 1.04517 1.73224 1.22473 0.96576 0.78584 1.00161 1.22520 0.95330 0.93829 1.03575 1.23150 1.03669 0.98156 0.88264 1.22200 1.02175 0.85302 1.05657 0.78668 1.20801 0.86690 0.83428 0.76144 1.90942 1.18278 1.85660 1.42957 1.42540 1.17323 0.99146 1.66419 1.23789 0.88462 0.81883 0.97758 1.75213 1.10026 1.11717 1.21240 1.74308 1.27174 0.96786 1.19320 1.30708 0.79237 1.00751 0.95574 1.84843 1.42504 1.15379 1.68485 1.22994 0.81484 0.89778 1.02517 0.92899 1.00195 1.00404 0.87758 0.87393 0.93014 0.90107 0.82528 0.88892 0.70584 0.66314 0.86610 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.02 13.29 21.45 0.28 -60.73 16 2 C -0.01 -0.62 5.46 84.65 0.46 -0.16 16 3 Si 0.98 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 9 C 0.04 2.33 4.26 29.85 0.13 2.45 16 10 C -0.11 -4.40 5.38 29.85 0.16 -4.24 16 11 C 0.53 22.77 8.06 87.66 0.71 23.48 16 12 O -0.60 -33.33 16.71 -3.07 -0.05 -33.38 16 13 N -0.65 -20.15 3.61 -847.20 -3.06 -23.21 16 14 C 0.14 4.08 7.27 86.24 0.63 4.71 16 15 C -0.15 -2.29 3.03 -52.39 -0.16 -2.45 16 16 C -0.10 -0.82 10.24 30.42 0.31 -0.51 16 17 C -0.13 -0.87 6.19 -11.71 -0.07 -0.94 16 18 H 0.20 -0.79 8.14 -2.39 -0.02 -0.81 16 19 C 0.54 8.06 7.57 87.65 0.66 8.72 16 20 O -0.51 -13.97 13.85 -3.01 -0.04 -14.01 16 21 N -0.59 -5.64 5.39 -423.21 -2.28 -7.92 16 22 C 0.38 6.47 9.08 178.91 1.62 8.10 16 23 N -0.33 -8.60 10.46 -173.31 -1.81 -10.41 16 24 N -0.33 -7.23 12.21 -175.20 -2.14 -9.37 16 25 C 0.17 1.58 13.37 130.49 1.74 3.32 16 26 O -0.23 -2.51 10.90 -8.57 -0.09 -2.61 16 27 C 0.15 2.39 8.62 86.24 0.74 3.13 16 28 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 29 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 30 H -0.02 -1.48 8.10 -2.39 -0.02 -1.50 16 31 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 35 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.45 -0.51 8.82 -92.71 -0.82 -1.33 16 38 H 0.32 -1.54 8.06 -2.91 -0.02 -1.56 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -105.59 357.20 0.28 -105.31 By element: Atomic # 1 Polarization: -5.15 SS G_CDS: 0.27 Total: -4.87 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.17 Total: 14.69 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -9.01 Total: -111.65 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.19 Total: -49.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -105.59 0.28 -105.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.058 kcal (2) G-P(sol) polarization free energy of solvation -105.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds