Wall clock time and date at job start Fri Apr 10 2020 18:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.48141 * 127.83976 * 359.68407 * 13 11 10 15 15 C 1.53988 * 104.81928 * 219.53949 * 14 13 11 16 16 H 1.08994 * 118.03469 * 115.98504 * 15 14 13 17 17 C 1.53004 * 118.30170 * 273.08706 * 15 14 13 18 18 C 1.52997 * 60.55892 * 91.48135 * 17 15 14 19 19 C 1.50702 * 120.26349 * 111.47291 * 18 17 15 20 20 O 1.21280 * 120.00319 * 291.80861 * 19 18 17 21 21 N 1.34780 * 119.99751 * 111.79915 * 19 18 17 22 22 C 1.38732 * 119.99628 * 180.02562 * 21 19 18 23 23 N 1.30968 * 126.35830 * 359.68785 * 22 21 19 24 24 N 1.28655 * 109.31624 * 179.82688 * 23 22 21 25 25 C 1.30140 * 109.51784 * 0.44781 * 24 23 22 26 26 O 1.34569 * 126.35745 * 180.02562 * 22 21 19 27 27 C 1.48151 * 127.83634 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 30 30 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 31 31 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 32 32 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 33 33 H 1.09004 * 110.40910 * 338.36660 * 14 13 11 34 34 H 1.09004 * 110.41038 * 100.79718 * 14 13 11 35 35 H 1.09001 * 117.44798 * 343.83041 * 17 15 14 36 36 H 1.09005 * 117.44018 * 199.13353 * 17 15 14 37 37 H 0.96999 * 119.99920 * 0.02562 * 21 19 18 38 38 H 1.08001 * 126.22033 * 179.72313 * 25 24 23 39 39 H 1.08998 * 110.40195 * 259.19816 * 27 13 11 40 40 H 1.09000 * 110.40268 * 21.62776 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6328 -6.3367 -0.0045 15 6 3.8618 -7.5308 -0.9494 16 1 4.4253 -7.3579 -1.8662 17 6 3.7863 -8.9429 -0.3652 18 6 2.5256 -8.3022 -0.9490 19 6 1.9185 -8.8402 -2.2191 20 8 2.5070 -8.7166 -3.2723 21 7 0.7216 -9.4588 -2.1845 22 6 0.1630 -9.9546 -3.3537 23 7 0.6842 -9.8855 -4.5532 24 7 -0.1074 -10.4521 -5.3944 25 6 -1.1611 -10.8931 -4.7708 26 8 -1.0178 -10.5900 -3.4667 27 6 1.6062 -7.5065 0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8904 31 1 2.8716 -3.6044 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 4.1371 -5.4490 -0.3864 34 1 3.9880 -6.5748 0.9982 35 1 3.8437 -9.0420 0.7187 36 1 4.2508 -9.7477 -0.9351 37 1 0.2508 -9.5574 -1.3422 38 1 -1.9985 -11.4081 -5.2180 39 1 1.6398 -7.9304 1.0056 40 1 0.5835 -7.5002 -0.3750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271767656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:24 Heat of formation + Delta-G solvation = 28.703243 kcal Electronic energy + Delta-G solvation = -26157.330731 eV Core-core repulsion = 22169.544850 eV Total energy + Delta-G solvation = -3987.785882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.51038 -41.35665 -39.54559 -38.04492 -36.52773 -35.69116 -33.68104 -33.50076 -31.08670 -30.79277 -29.01053 -26.87616 -25.57064 -24.84973 -24.25537 -22.92425 -21.58118 -21.34685 -20.07989 -19.32706 -18.68108 -17.85107 -17.74934 -17.17603 -16.84224 -16.10633 -15.86942 -15.53431 -15.27947 -15.10255 -15.01434 -14.42556 -14.13228 -13.64173 -13.34018 -12.75470 -12.46996 -12.41129 -12.18925 -12.16584 -12.13314 -12.02815 -11.86402 -11.32287 -11.23572 -11.07323 -10.92822 -10.68861 -10.62100 -10.37084 -10.00069 -9.71184 -9.28962 -9.25919 -9.09487 -8.72731 -8.33957 -5.98104 -4.02810 0.75950 1.03796 1.84230 2.32404 2.81623 2.91901 3.03093 3.05671 3.33659 3.38495 3.40135 3.75144 3.97898 4.02266 4.12886 4.36105 4.45884 4.56215 4.69784 4.73339 5.01776 5.13099 5.17264 5.24111 5.30243 5.36953 5.45156 5.46670 5.51134 5.61022 5.76533 6.07323 6.15975 6.26058 6.42839 6.81983 7.38079 7.67169 7.70851 7.81291 8.03539 8.06553 8.33969 8.57979 9.04862 9.60859 11.12874 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002690 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.538920 B =10405.850385 C =11323.979269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.528 6.528 13 N -0.633 5.633 14 C 0.127 3.873 15 C -0.124 4.124 16 H 0.137 0.863 17 C -0.100 4.100 18 C -0.197 4.197 19 C 0.568 3.432 20 O -0.457 6.457 21 N -0.612 5.612 22 C 0.391 3.609 23 N -0.270 5.270 24 N -0.275 5.275 25 C 0.135 3.865 26 O -0.241 6.241 27 C 0.140 3.860 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.429 0.571 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -26.302 -0.062 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.326 3.674 12 O -0.403 6.403 13 N -0.371 5.371 14 C 0.003 3.997 15 C -0.144 4.144 16 H 0.154 0.846 17 C -0.137 4.137 18 C -0.202 4.202 19 C 0.355 3.645 20 O -0.323 6.323 21 N -0.271 5.271 22 C 0.091 3.909 23 N -0.126 5.126 24 N -0.120 5.120 25 C -0.097 4.097 26 O -0.119 6.119 27 C 0.016 3.984 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.268 0.732 38 H 0.283 0.717 39 H 0.103 0.897 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.472 -25.592 -1.750 26.039 hybrid contribution -0.970 0.395 1.202 1.595 sum 3.502 -25.197 -0.548 25.445 Atomic orbital electron populations 1.69983 1.06087 1.26764 1.49989 1.25026 0.94834 0.99264 0.95225 0.86636 0.79546 0.83087 0.78577 1.20207 1.21275 1.20208 1.21156 0.92898 0.90910 1.51687 0.92590 1.18917 0.93162 0.89343 0.98637 1.21884 1.00771 0.91094 1.02611 1.21437 0.88102 0.84047 0.73767 1.90689 1.14227 1.86654 1.48697 1.49507 1.06715 1.04815 1.76038 1.21828 0.81877 0.97320 0.98632 1.23969 0.96068 0.91697 1.02678 0.84559 1.23220 0.92981 0.95604 1.01916 1.22587 0.92486 1.07925 0.97166 1.19478 0.78579 0.76397 0.90046 1.90901 1.58883 1.51881 1.30633 1.42600 1.21359 1.56976 1.06155 1.23589 0.82261 0.94251 0.90832 1.75297 1.22641 1.19721 0.94919 1.74378 1.00966 1.10113 1.26508 1.29441 1.01996 1.02464 0.75839 1.84805 1.35324 1.59587 1.32230 1.21584 0.96864 0.82356 0.97564 0.92853 0.95851 0.95775 0.90004 0.90045 0.88473 0.90066 0.86800 0.86911 0.73216 0.71680 0.89682 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.12 -2.48 4.62 -27.88 -0.13 -2.61 16 11 C 0.53 10.16 7.91 -10.98 -0.09 10.07 16 12 O -0.53 -12.27 16.25 5.56 0.09 -12.18 16 13 N -0.63 -8.60 3.32 -169.57 -0.56 -9.17 16 14 C 0.13 1.19 6.70 -2.62 -0.02 1.18 16 15 C -0.12 -1.05 6.76 -89.43 -0.60 -1.65 16 16 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.10 -0.56 9.90 -26.73 -0.26 -0.83 16 18 C -0.20 -1.75 2.80 -154.28 -0.43 -2.18 16 19 C 0.57 6.61 7.42 -10.98 -0.08 6.53 16 20 O -0.46 -7.19 15.54 5.56 0.09 -7.11 16 21 N -0.61 -5.96 5.22 -12.95 -0.07 -6.03 16 22 C 0.39 4.66 9.08 -86.51 -0.79 3.87 16 23 N -0.27 -4.06 10.46 29.94 0.31 -3.74 16 24 N -0.27 -3.49 12.21 29.46 0.36 -3.13 16 25 C 0.14 1.06 13.37 52.04 0.70 1.76 16 26 O -0.24 -2.24 10.89 4.04 0.04 -2.19 16 27 C 0.14 1.43 6.44 -2.42 -0.02 1.41 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 33 H 0.10 0.92 7.30 -51.93 -0.38 0.54 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.43 2.57 8.32 -40.82 -0.34 2.23 16 38 H 0.27 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.97 7.32 -51.93 -0.38 0.59 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -40.72 351.93 -5.82 -46.54 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.85 Total: -3.05 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.25 Total: 4.81 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.78 Total: -48.74 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.22 Total: -21.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -40.72 -5.82 -46.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.245 kcal (2) G-P(sol) polarization free energy of solvation -40.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds