Wall clock time and date at job start Fri Apr 10 2020 18:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.48141 * 127.83976 * 359.68407 * 13 11 10 15 15 C 1.53988 * 104.81928 * 219.53949 * 14 13 11 16 16 H 1.08994 * 118.03469 * 115.98504 * 15 14 13 17 17 C 1.53004 * 118.30170 * 273.08706 * 15 14 13 18 18 C 1.52997 * 60.55892 * 91.48135 * 17 15 14 19 19 C 1.50702 * 120.26349 * 111.47291 * 18 17 15 20 20 O 1.21280 * 120.00319 * 291.80861 * 19 18 17 21 21 N 1.34780 * 119.99751 * 111.79915 * 19 18 17 22 22 C 1.38732 * 119.99628 * 180.02562 * 21 19 18 23 23 N 1.30968 * 126.35830 * 359.68785 * 22 21 19 24 24 N 1.28655 * 109.31624 * 179.82688 * 23 22 21 25 25 C 1.30140 * 109.51784 * 0.44781 * 24 23 22 26 26 O 1.34569 * 126.35745 * 180.02562 * 22 21 19 27 27 C 1.48151 * 127.83634 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 30 30 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 31 31 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 32 32 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 33 33 H 1.09004 * 110.40910 * 338.36660 * 14 13 11 34 34 H 1.09004 * 110.41038 * 100.79718 * 14 13 11 35 35 H 1.09001 * 117.44798 * 343.83041 * 17 15 14 36 36 H 1.09005 * 117.44018 * 199.13353 * 17 15 14 37 37 H 0.96999 * 119.99920 * 0.02562 * 21 19 18 38 38 H 1.08001 * 126.22033 * 179.72313 * 25 24 23 39 39 H 1.08998 * 110.40195 * 259.19816 * 27 13 11 40 40 H 1.09000 * 110.40268 * 21.62776 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6328 -6.3367 -0.0045 15 6 3.8618 -7.5308 -0.9494 16 1 4.4253 -7.3579 -1.8662 17 6 3.7863 -8.9429 -0.3652 18 6 2.5256 -8.3022 -0.9490 19 6 1.9185 -8.8402 -2.2191 20 8 2.5070 -8.7166 -3.2723 21 7 0.7216 -9.4588 -2.1845 22 6 0.1630 -9.9546 -3.3537 23 7 0.6842 -9.8855 -4.5532 24 7 -0.1074 -10.4521 -5.3944 25 6 -1.1611 -10.8931 -4.7708 26 8 -1.0178 -10.5900 -3.4667 27 6 1.6062 -7.5065 0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8904 31 1 2.8716 -3.6044 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 4.1371 -5.4490 -0.3864 34 1 3.9880 -6.5748 0.9982 35 1 3.8437 -9.0420 0.7187 36 1 4.2508 -9.7477 -0.9351 37 1 0.2508 -9.5574 -1.3422 38 1 -1.9985 -11.4081 -5.2180 39 1 1.6398 -7.9304 1.0056 40 1 0.5835 -7.5002 -0.3750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271767656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:23 Heat of formation + Delta-G solvation = -6.571116 kcal Electronic energy + Delta-G solvation = -26158.860342 eV Core-core repulsion = 22169.544850 eV Total energy + Delta-G solvation = -3989.315492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.32561 -42.21304 -40.68377 -39.22702 -37.36319 -36.59737 -35.59923 -34.73167 -32.97943 -31.65945 -29.87680 -28.35800 -26.68502 -26.13125 -25.03909 -23.81617 -23.21808 -22.19375 -20.91379 -20.35731 -19.76142 -18.90753 -18.68138 -18.34296 -17.92540 -17.53727 -16.95712 -16.53571 -16.43016 -16.29856 -16.25863 -15.97976 -15.22929 -14.67298 -14.38710 -14.18185 -13.90342 -13.61907 -13.51332 -13.13711 -13.12081 -12.98137 -12.78983 -12.77164 -12.63610 -12.53263 -12.13893 -11.95772 -11.92313 -11.64359 -11.43243 -11.31531 -11.16105 -10.71689 -10.57260 -10.14743 -9.81534 -8.19215 -6.33423 -0.03078 0.26540 1.04348 1.41525 1.46242 1.48131 1.53785 1.60359 1.86609 2.16745 2.30492 2.42438 2.97917 3.13867 3.27157 3.30244 3.56427 3.70299 3.77571 3.90906 3.91908 4.04450 4.38135 4.44618 4.48606 4.53315 4.62216 4.64465 4.74458 4.80924 4.82450 4.96523 4.99112 5.14476 5.25969 5.47892 5.59833 5.70992 5.82775 6.15424 6.42079 6.55357 6.84699 7.16321 7.25147 7.36941 8.93383 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002690 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.538920 B =10405.850385 C =11323.979269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.112 4.112 11 C 0.532 3.468 12 O -0.588 6.588 13 N -0.630 5.630 14 C 0.121 3.879 15 C -0.134 4.134 16 H 0.125 0.875 17 C -0.054 4.054 18 C -0.205 4.205 19 C 0.566 3.434 20 O -0.508 6.508 21 N -0.600 5.600 22 C 0.381 3.619 23 N -0.321 5.321 24 N -0.327 5.327 25 C 0.172 3.828 26 O -0.235 6.235 27 C 0.138 3.862 28 H 0.263 0.737 29 H -0.024 1.024 30 H -0.014 1.014 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.445 0.555 38 H 0.326 0.674 39 H 0.127 0.873 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -27.906 1.503 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.152 4.152 11 C 0.324 3.676 12 O -0.467 6.467 13 N -0.365 5.365 14 C 0.000 4.000 15 C -0.154 4.154 16 H 0.143 0.857 17 C -0.091 4.091 18 C -0.209 4.209 19 C 0.354 3.646 20 O -0.377 6.377 21 N -0.260 5.260 22 C 0.079 3.921 23 N -0.176 5.176 24 N -0.170 5.170 25 C -0.061 4.061 26 O -0.113 6.113 27 C 0.015 3.985 28 H 0.072 0.928 29 H -0.005 1.005 30 H 0.004 0.996 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.287 0.713 38 H 0.340 0.660 39 H 0.145 0.855 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.621 -27.269 -0.170 28.062 hybrid contribution -1.696 0.743 0.656 1.964 sum 4.925 -26.526 0.485 26.983 Atomic orbital electron populations 1.70170 1.08349 1.27897 1.51393 1.26151 0.95727 1.03998 0.94589 0.85369 0.78061 0.77267 0.79533 1.18913 1.21381 1.18326 1.21674 0.94023 0.91516 1.50927 0.90496 1.18687 0.93685 0.92503 0.94595 1.21602 0.99267 0.89670 1.04647 1.21032 0.87248 0.85410 0.73953 1.90661 1.16477 1.87690 1.51914 1.49362 1.08970 1.04677 1.73443 1.22188 0.78902 0.97872 1.01052 1.23971 0.95584 0.93042 1.02756 0.85677 1.23448 0.88303 0.93401 1.03974 1.22506 0.92716 1.09584 0.96105 1.20072 0.78525 0.75601 0.90386 1.90881 1.60310 1.54027 1.32480 1.42556 1.21005 1.56165 1.06305 1.23706 0.82942 0.94581 0.90888 1.75189 1.24582 1.21387 0.96406 1.74283 1.02803 1.12631 1.27325 1.30778 1.01423 0.99002 0.74859 1.84850 1.34235 1.59279 1.32962 1.21852 0.96080 0.80559 0.99968 0.92847 1.00508 0.99591 0.87205 0.88502 0.88662 0.86137 0.83044 0.85952 0.71285 0.65995 0.85544 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.29 21.45 0.28 -59.69 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.41 4.26 29.85 0.13 2.54 16 10 C -0.11 -4.52 4.62 29.85 0.14 -4.38 16 11 C 0.53 20.57 7.91 87.66 0.69 21.26 16 12 O -0.59 -28.81 16.25 -3.02 -0.05 -28.86 16 13 N -0.63 -16.19 3.32 -808.80 -2.69 -18.88 16 14 C 0.12 1.90 6.70 86.40 0.58 2.48 16 15 C -0.13 -1.89 6.76 -10.02 -0.07 -1.96 16 16 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.05 -0.37 9.90 30.59 0.30 -0.07 16 18 C -0.20 -3.18 2.80 -52.03 -0.15 -3.33 16 19 C 0.57 13.07 7.42 87.66 0.65 13.72 16 20 O -0.51 -16.54 15.54 -3.03 -0.05 -16.59 16 21 N -0.60 -11.60 5.22 -423.20 -2.21 -13.81 16 22 C 0.38 9.17 9.08 178.91 1.62 10.79 16 23 N -0.32 -10.00 10.46 -173.31 -1.81 -11.81 16 24 N -0.33 -8.40 12.21 -175.20 -2.14 -10.53 16 25 C 0.17 2.42 13.37 130.49 1.74 4.17 16 26 O -0.23 -4.10 10.89 -8.45 -0.09 -4.19 16 27 C 0.14 2.52 6.44 86.52 0.56 3.08 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H -0.02 -1.52 8.10 -2.39 -0.02 -1.54 16 30 H -0.01 -0.90 8.10 -2.38 -0.02 -0.92 16 31 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.10 3.56 7.94 -2.39 -0.02 3.54 16 33 H 0.09 1.56 7.30 -2.38 -0.02 1.54 16 34 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.44 4.99 8.32 -92.71 -0.77 4.22 16 38 H 0.33 -0.19 8.06 -2.91 -0.02 -0.22 16 39 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.50 7.32 -2.39 -0.02 1.48 16 Total: -1.00 -98.34 351.93 0.50 -97.85 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 0.32 Total: 2.52 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.90 Total: 17.52 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -8.56 Total: -114.72 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.19 Total: -49.64 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -98.34 0.50 -97.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.275 kcal (2) G-P(sol) polarization free energy of solvation -98.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds