Wall clock time and date at job start Fri Apr 10 2020 18:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47039 * 240.00274 * 3 2 1 5 5 H 1.48503 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47048 * 120.00511 * 3 2 1 7 7 C 1.37873 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46738 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46752 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00048 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99880 * 179.97438 * 11 10 9 14 14 C 1.48095 * 126.94502 * 4.54637 * 13 11 10 15 15 C 1.54958 * 103.26102 * 140.98281 * 14 13 11 16 16 C 1.54705 * 102.70091 * 37.55509 * 15 14 13 17 17 H 1.08998 * 117.49366 * 197.83548 * 16 15 14 18 18 C 1.55465 * 117.64030 * 40.31301 * 16 15 14 19 19 C 1.47379 * 126.94558 * 184.56698 * 13 11 10 20 20 C 1.50700 * 117.18136 * 344.25960 * 19 13 11 21 21 O 1.21269 * 120.00387 * 138.71362 * 20 19 13 22 22 N 1.34786 * 119.99731 * 318.70615 * 20 19 13 23 23 C 1.38724 * 119.99566 * 175.14298 * 22 20 19 24 24 N 1.30970 * 126.36396 * 359.75100 * 23 22 20 25 25 N 1.28650 * 109.32060 * 180.02562 * 24 23 22 26 26 C 1.30141 * 109.52100 * 359.97438 * 25 24 23 27 27 O 1.34575 * 126.35432 * 179.44115 * 23 22 20 28 28 H 0.96997 * 120.00498 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47564 * 59.99974 * 9 7 2 30 30 H 1.08999 * 109.46965 * 299.99161 * 9 7 2 31 31 H 1.08995 * 109.47726 * 60.00030 * 10 9 7 32 32 H 1.08994 * 109.47049 * 299.98986 * 10 9 7 33 33 H 1.09000 * 110.65688 * 259.42970 * 14 13 11 34 34 H 1.09002 * 110.65711 * 22.37653 * 14 13 11 35 35 H 1.09004 * 110.76279 * 155.85410 * 15 14 13 36 36 H 1.08999 * 110.76676 * 279.24818 * 15 14 13 37 37 H 1.09004 * 117.91717 * 161.08974 * 18 16 15 38 38 H 1.08999 * 117.29328 * 15.81648 * 18 16 15 39 39 H 0.96998 * 119.99710 * 354.87208 * 22 20 19 40 40 H 1.07994 * 126.22459 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1344 0.0008 14 6 3.6329 -6.3152 0.0935 15 6 3.7807 -7.5584 1.0067 16 6 2.6019 -8.4534 0.5563 17 1 2.2922 -9.2535 1.2286 18 6 2.2941 -8.5287 -0.9657 19 6 1.5920 -7.4886 -0.0925 20 6 0.1140 -7.6292 0.1655 21 8 -0.5560 -8.3628 -0.5299 22 7 -0.4634 -6.9396 1.1694 23 6 -1.8387 -6.9901 1.3443 24 7 -2.6909 -7.6599 0.6092 25 7 -3.8808 -7.4748 1.0617 26 6 -3.8350 -6.6861 2.0959 27 8 -2.5442 -6.3644 2.3044 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 2.8722 -3.6043 0.8904 32 1 2.8720 -3.6043 -0.8895 33 1 4.0595 -6.5081 -0.8908 34 1 4.0999 -5.4422 0.5495 35 1 4.7339 -8.0567 0.8297 36 1 3.6770 -7.2817 2.0559 37 1 1.6984 -9.3679 -1.3249 38 1 3.0646 -8.1731 -1.6496 39 1 0.0831 -6.4112 1.7719 40 1 -4.6784 -6.3539 2.6829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:27 Heat of formation + Delta-G solvation = 37.037638 kcal Electronic energy + Delta-G solvation = -27326.859037 eV Core-core repulsion = 23339.434562 eV Total energy + Delta-G solvation = -3987.424475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.06134 -41.37137 -39.17271 -38.23743 -36.07610 -35.23445 -33.66724 -33.05441 -30.96049 -30.82749 -29.97738 -26.17692 -25.31762 -24.42617 -23.82047 -22.97066 -21.96322 -20.89590 -20.05536 -19.21674 -18.56256 -17.70431 -17.37301 -16.81581 -16.62578 -16.08178 -15.80676 -15.18256 -15.08602 -14.89609 -14.62720 -14.47372 -14.19867 -13.58294 -13.24157 -13.01815 -12.43873 -12.32491 -12.27069 -12.24003 -11.74977 -11.55389 -11.40957 -11.25537 -11.05198 -10.99871 -10.97038 -10.81583 -10.69735 -10.13235 -10.10152 -9.82840 -9.44090 -9.20918 -8.73385 -8.69109 -8.41260 -6.05088 -4.10672 1.16921 1.46427 2.10199 2.60403 2.78565 2.90523 3.25607 3.28008 3.33596 3.34633 3.35734 3.97962 4.04022 4.23867 4.39194 4.44431 4.53007 4.64921 4.93336 5.02730 5.09043 5.15275 5.25398 5.30074 5.35258 5.44127 5.51956 5.65402 5.68496 5.70677 5.93922 6.00455 6.05544 6.16332 6.68192 6.87745 7.45149 7.61774 7.70709 7.72381 7.94637 8.22508 8.38940 8.48452 8.96723 9.53710 11.05651 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.004330 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.047575 B = 6464.593471 C = 8615.428334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.120 4.120 11 C 0.524 3.476 12 O -0.521 6.521 13 N -0.600 5.600 14 C 0.096 3.904 15 C -0.107 4.107 16 C -0.152 4.152 17 H 0.129 0.871 18 C -0.115 4.115 19 C 0.055 3.945 20 C 0.577 3.423 21 O -0.465 6.465 22 N -0.588 5.588 23 C 0.409 3.591 24 N -0.280 5.280 25 N -0.277 5.277 26 C 0.129 3.871 27 O -0.239 6.239 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.426 0.574 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -17.566 6.155 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.160 4.160 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.338 5.338 14 C -0.026 4.026 15 C -0.145 4.145 16 C -0.172 4.172 17 H 0.147 0.853 18 C -0.154 4.154 19 C -0.035 4.035 20 C 0.363 3.637 21 O -0.332 6.332 22 N -0.244 5.244 23 C 0.109 3.891 24 N -0.136 5.136 25 N -0.123 5.123 26 C -0.104 4.104 27 O -0.117 6.117 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.265 0.735 40 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.260 -18.574 4.678 19.863 hybrid contribution 1.068 2.329 1.288 2.868 sum 6.329 -16.245 5.966 18.427 Atomic orbital electron populations 1.69980 1.06102 1.26872 1.49726 1.25016 0.94813 0.99282 0.95115 0.86639 0.79555 0.83086 0.78583 1.20190 1.21231 1.20197 1.21119 0.92862 0.90839 1.52031 0.92591 1.18916 0.93082 0.89304 0.98646 1.21901 1.00758 0.90593 1.02759 1.21741 0.88428 0.84219 0.73969 1.90757 1.14063 1.86359 1.48257 1.48814 1.07590 1.02537 1.74859 1.22649 0.80300 0.99350 1.00312 1.22379 0.97592 0.94227 1.00262 1.24319 0.96538 0.99611 0.96702 0.85315 1.23797 1.00891 0.98376 0.92334 1.21304 0.88351 0.84152 1.09678 1.19082 0.87449 0.78767 0.78433 1.90858 1.62697 1.35410 1.44211 1.42287 0.99607 1.49446 1.33057 1.23439 0.88264 0.91484 0.85910 1.75213 0.93921 1.22357 1.22156 1.74287 1.15220 1.14307 1.08468 1.29307 0.83250 0.98740 0.99128 1.84814 1.20349 1.59460 1.47099 0.92785 0.95814 0.95870 0.89918 0.89807 0.90357 0.88384 0.88945 0.89519 0.85836 0.87010 0.73475 0.71977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.22 4.65 -27.88 -0.13 -2.35 16 11 C 0.52 9.17 7.45 -10.98 -0.08 9.09 16 12 O -0.52 -11.21 12.71 5.55 0.07 -11.14 16 13 N -0.60 -7.69 3.28 -156.50 -0.51 -8.20 16 14 C 0.10 0.79 6.45 -2.13 -0.01 0.77 16 15 C -0.11 -0.64 7.02 -24.80 -0.17 -0.81 16 16 C -0.15 -1.18 7.15 -87.89 -0.63 -1.81 16 17 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.12 -1.05 9.54 -25.49 -0.24 -1.29 16 19 C 0.06 0.68 3.21 -132.03 -0.42 0.26 16 20 C 0.58 9.31 6.47 -10.98 -0.07 9.24 16 21 O -0.47 -8.87 15.28 5.57 0.09 -8.79 16 22 N -0.59 -9.42 3.47 -12.95 -0.04 -9.47 16 23 C 0.41 7.21 9.08 -86.51 -0.79 6.42 16 24 N -0.28 -5.45 10.48 29.94 0.31 -5.14 16 25 N -0.28 -4.68 12.21 29.46 0.36 -4.32 16 26 C 0.13 1.64 13.37 52.04 0.70 2.34 16 27 O -0.24 -3.64 10.90 4.00 0.04 -3.60 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.08 1.34 7.79 -51.93 -0.40 0.93 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 0.55 7.29 -51.93 -0.38 0.17 16 34 H 0.10 0.73 7.22 -51.93 -0.37 0.36 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.12 1.15 7.90 -51.93 -0.41 0.74 16 38 H 0.11 0.84 7.16 -51.93 -0.37 0.47 16 39 H 0.43 6.09 7.79 -40.82 -0.32 5.77 16 40 H 0.26 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -38.52 343.70 -5.93 -44.45 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.75 Total: 1.49 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.39 Total: 9.57 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.85 Total: -53.22 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.20 Total: -23.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.52 -5.93 -44.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.483 kcal (2) G-P(sol) polarization free energy of solvation -38.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds