Wall clock time and date at job start Fri Apr 10 2020 18:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00244 * 2 1 4 4 H 1.48502 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46983 * 299.99740 * 3 2 1 6 6 H 1.48497 * 109.46641 * 59.99634 * 3 2 1 7 7 C 1.37877 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47072 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00250 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99982 * 179.97438 * 11 10 9 14 14 C 1.48121 * 127.04543 * 359.97438 * 13 11 10 15 15 C 1.54940 * 103.25709 * 140.77350 * 14 13 11 16 16 C 1.54576 * 102.86044 * 37.43127 * 15 14 13 17 17 H 1.09007 * 117.27101 * 116.74293 * 16 15 14 18 18 C 1.55074 * 118.28433 * 275.08433 * 16 15 14 19 19 C 1.47533 * 127.04654 * 179.97438 * 13 11 10 20 20 C 1.50701 * 117.36719 * 64.93342 * 19 13 11 21 21 O 1.21285 * 119.99653 * 159.71110 * 20 19 13 22 22 N 1.34777 * 120.00341 * 339.71282 * 20 19 13 23 23 C 1.38725 * 119.99875 * 180.02562 * 22 20 19 24 24 N 1.30972 * 126.36194 * 359.97438 * 23 22 20 25 25 N 1.28658 * 109.32018 * 180.02562 * 24 23 22 26 26 C 1.30135 * 109.51855 * 0.02562 * 25 24 23 27 27 O 1.34574 * 126.35478 * 179.97438 * 23 22 20 28 28 H 0.97001 * 119.99553 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46657 * 60.00209 * 9 7 2 30 30 H 1.09000 * 109.46720 * 300.00450 * 9 7 2 31 31 H 1.08995 * 109.47500 * 59.99942 * 10 9 7 32 32 H 1.09003 * 109.47000 * 299.99689 * 10 9 7 33 33 H 1.08996 * 110.66042 * 259.21649 * 14 13 11 34 34 H 1.08997 * 110.65659 * 22.16757 * 14 13 11 35 35 H 1.08997 * 110.73682 * 155.77431 * 15 14 13 36 36 H 1.09003 * 110.73629 * 279.08865 * 15 14 13 37 37 H 1.08995 * 117.31092 * 343.82205 * 18 16 15 38 38 H 1.08997 * 117.88218 * 198.58373 * 18 16 15 39 39 H 0.96994 * 119.99823 * 359.97438 * 22 20 19 40 40 H 1.07996 * 126.22392 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0003 13 7 2.1655 -6.1344 0.0016 14 6 3.6355 -6.3161 0.0021 15 6 3.8445 -7.5190 0.9561 16 6 2.6380 -8.4291 0.6316 17 1 2.8525 -9.4132 0.2147 18 6 1.2929 -8.1507 1.3514 19 6 1.5901 -7.4929 0.0016 20 6 0.7982 -7.9099 -1.2109 21 8 0.6188 -9.0868 -1.4426 22 7 0.2895 -6.9750 -2.0377 23 6 -0.4399 -7.3589 -3.1536 24 7 -0.7082 -8.5871 -3.5210 25 7 -1.4046 -8.5653 -4.6026 26 6 -1.6059 -7.3318 -4.9654 27 8 -1.0031 -6.5385 -4.0595 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.8711 -3.6040 0.8922 32 1 2.8725 -3.6048 -0.8878 33 1 3.9941 -6.5528 -0.9996 34 1 4.1329 -5.4258 0.3870 35 1 4.7825 -8.0283 0.7352 36 1 3.8153 -7.1959 1.9967 37 1 1.3217 -7.5159 2.2370 38 1 0.5497 -8.9478 1.3691 39 1 0.4327 -6.0338 -1.8522 40 1 -2.1574 -7.0040 -5.8340 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:31 Heat of formation + Delta-G solvation = 27.253764 kcal Electronic energy + Delta-G solvation = -27084.283585 eV Core-core repulsion = 23096.434849 eV Total energy + Delta-G solvation = -3987.848736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.25187 -41.34736 -39.29337 -38.15802 -36.25605 -35.39552 -33.73623 -33.18705 -31.00201 -30.98707 -30.11538 -26.32890 -25.29934 -23.99307 -23.95192 -23.17928 -22.00635 -21.22388 -20.04295 -19.40169 -18.69730 -17.66296 -17.57442 -16.98536 -16.67452 -16.18078 -15.87021 -15.29504 -15.02531 -15.00501 -14.75638 -14.51759 -13.99475 -13.65389 -13.27280 -13.01678 -12.51973 -12.49659 -12.33306 -12.08819 -11.93817 -11.68409 -11.50234 -11.27644 -11.16809 -11.05212 -10.99798 -10.80771 -10.66625 -10.25467 -10.15156 -9.87143 -9.45793 -9.20809 -8.99415 -8.87355 -8.44272 -6.07922 -4.13101 0.98170 1.35626 1.99011 2.51105 2.61771 2.74611 3.09713 3.24930 3.26582 3.32859 3.35196 3.88925 4.15366 4.20668 4.36760 4.37560 4.56517 4.77676 4.81601 4.92881 4.97627 5.06472 5.25181 5.27773 5.37385 5.45541 5.47645 5.48446 5.59484 5.82371 5.88278 5.95237 5.98308 6.11550 6.64337 6.76406 7.41748 7.56993 7.59996 7.67157 7.91622 8.18114 8.29035 8.34134 8.94523 9.51587 11.02879 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.003941 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.116554 B = 7103.067854 C = 9030.959669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.524 3.476 12 O -0.523 6.523 13 N -0.606 5.606 14 C 0.102 3.898 15 C -0.109 4.109 16 C -0.114 4.114 17 H 0.136 0.864 18 C -0.110 4.110 19 C 0.043 3.957 20 C 0.566 3.434 21 O -0.469 6.469 22 N -0.605 5.605 23 C 0.396 3.604 24 N -0.276 5.276 25 N -0.278 5.278 26 C 0.133 3.867 27 O -0.236 6.236 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.433 0.567 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -15.635 -2.285 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.316 3.684 12 O -0.397 6.397 13 N -0.344 5.344 14 C -0.020 4.020 15 C -0.147 4.147 16 C -0.133 4.133 17 H 0.154 0.846 18 C -0.148 4.148 19 C -0.047 4.047 20 C 0.352 3.648 21 O -0.337 6.337 22 N -0.266 5.266 23 C 0.096 3.904 24 N -0.133 5.133 25 N -0.123 5.123 26 C -0.100 4.100 27 O -0.114 6.114 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.276 0.724 40 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 5.551 -17.492 -2.404 18.509 hybrid contribution 0.320 2.999 -0.165 3.021 sum 5.871 -14.493 -2.569 15.847 Atomic orbital electron populations 1.69997 1.06083 1.26656 1.49909 1.25014 0.94818 0.99296 0.95111 0.86531 0.80001 0.83737 0.77683 1.19700 1.20966 1.20949 1.21196 0.92966 0.90799 1.51798 0.92468 1.18944 0.93110 0.89328 0.98758 1.21939 1.00859 0.90613 1.02949 1.21803 0.88416 0.84333 0.73833 1.90717 1.14034 1.86599 1.48395 1.48959 1.07305 1.02584 1.75594 1.22767 0.79905 0.99307 1.00042 1.22503 0.96914 0.94612 1.00714 1.24215 0.89167 0.98661 1.01294 0.84593 1.23864 0.97069 1.01069 0.92801 1.21385 1.04666 0.85240 0.93448 1.19716 0.78393 0.84851 0.81803 1.90875 1.55756 1.16132 1.70891 1.42858 1.50171 1.13878 1.19681 1.23618 0.94287 0.84370 0.88142 1.75246 1.15947 1.14254 1.07806 1.74314 1.12076 1.19376 1.06580 1.29406 0.99582 0.85021 0.95981 1.84870 1.55126 1.39753 1.31629 0.92889 0.95816 0.95617 0.89633 0.89836 0.90549 0.88410 0.88824 0.89617 0.86888 0.86389 0.72384 0.71776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.04 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.12 -2.21 4.57 -27.89 -0.13 -2.34 16 11 C 0.52 8.81 6.77 -10.99 -0.07 8.73 16 12 O -0.52 -10.74 14.69 5.55 0.08 -10.65 16 13 N -0.61 -7.72 3.02 -156.29 -0.47 -8.19 16 14 C 0.10 0.88 6.95 -2.13 -0.01 0.87 16 15 C -0.11 -0.73 6.88 -24.88 -0.17 -0.90 16 16 C -0.11 -1.00 6.85 -88.18 -0.60 -1.60 16 17 H 0.14 1.08 8.14 -51.92 -0.42 0.66 16 18 C -0.11 -1.13 10.10 -25.60 -0.26 -1.39 16 19 C 0.04 0.54 2.43 -131.86 -0.32 0.22 16 20 C 0.57 8.70 7.61 -10.98 -0.08 8.61 16 21 O -0.47 -8.09 15.58 5.55 0.09 -8.01 16 22 N -0.61 -9.71 5.28 -12.95 -0.07 -9.78 16 23 C 0.40 6.52 9.08 -86.51 -0.79 5.74 16 24 N -0.28 -4.85 10.46 29.94 0.31 -4.54 16 25 N -0.28 -4.18 12.21 29.46 0.36 -3.82 16 26 C 0.13 1.49 13.37 52.04 0.70 2.18 16 27 O -0.24 -3.37 10.90 3.99 0.04 -3.33 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.76 7.23 -51.93 -0.38 0.38 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.43 7.10 5.51 -40.82 -0.22 6.87 16 40 H 0.27 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -36.26 347.67 -5.75 -42.01 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.78 Total: 2.79 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.27 Total: 8.05 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.87 Total: -51.82 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.21 Total: -21.99 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.26 -5.75 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.264 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds