Wall clock time and date at job start Fri Apr 10 2020 18:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99801 * 3 2 1 5 5 H 1.48505 * 109.47302 * 29.99696 * 3 2 1 6 6 H 1.48498 * 109.47131 * 149.99498 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99635 * 180.02562 * 13 11 10 15 15 C 1.54891 * 129.09236 * 299.93407 * 14 13 11 16 16 C 1.57170 * 77.91967 * 180.16855 * 15 14 13 17 17 C 1.50696 * 129.25132 * 179.19484 * 16 15 14 18 18 O 1.21279 * 120.00148 * 241.28488 * 17 16 15 19 19 N 1.34777 * 119.99604 * 61.28908 * 17 16 15 20 20 C 1.38727 * 119.99617 * 179.97438 * 19 17 16 21 21 N 1.30974 * 126.36179 * 359.68578 * 20 19 17 22 22 N 1.28661 * 109.32290 * 179.82869 * 21 20 19 23 23 C 1.30132 * 109.51289 * 0.44373 * 22 21 20 24 24 O 1.34576 * 126.35822 * 180.02562 * 20 19 17 25 25 C 1.54414 * 129.01074 * 180.02562 * 14 13 11 26 26 C 1.54887 * 129.09413 * 60.06581 * 14 13 11 27 27 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 29 29 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 30 30 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 31 31 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 32 32 H 0.96995 * 120.00015 * 359.72695 * 13 11 10 33 33 H 1.09003 * 114.97974 * 291.96733 * 15 14 13 34 34 H 1.08999 * 114.97682 * 67.13229 * 15 14 13 35 35 H 0.96995 * 120.00294 * 359.97438 * 19 17 16 36 36 H 1.08009 * 126.22029 * 179.72989 * 23 22 21 37 37 H 1.09001 * 114.93614 * 293.13047 * 25 14 13 38 38 H 1.09004 * 114.93227 * 68.15489 * 25 14 13 39 39 H 1.09000 * 114.97494 * 292.86413 * 26 14 13 40 40 H 1.08999 * 114.97801 * 68.03370 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 8 6.1349 -1.5863 0.0015 13 7 6.2024 -3.8038 0.0003 14 6 7.6673 -3.8038 0.0008 15 6 8.6444 -3.2031 -1.0402 16 6 9.6294 -3.8187 0.0185 17 6 11.1362 -3.8415 0.0188 18 8 11.7267 -4.9007 0.0032 19 7 11.8276 -2.6847 0.0366 20 6 13.2147 -2.7056 0.0374 21 7 13.9752 -3.7719 0.0280 22 7 15.2109 -3.4135 0.0286 23 6 15.2867 -2.1145 0.0479 24 8 14.0287 -1.6341 0.0545 25 6 8.6394 -5.0036 -0.0003 26 6 8.6437 -3.2047 1.0434 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8753 -0.6804 -0.8888 30 1 3.6585 -3.1502 -0.8893 31 1 3.6578 -3.1506 0.8906 32 1 5.7174 -4.6438 0.0039 33 1 8.6481 -3.7019 -2.0094 34 1 8.6366 -2.1150 -1.1045 35 1 11.3553 -1.8375 0.0488 36 1 16.1937 -1.5282 0.0573 37 1 8.6266 -5.6061 0.9080 38 1 8.6431 -5.5910 -0.9184 39 1 8.6358 -2.1167 1.1092 40 1 8.6467 -3.7049 2.0118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271768174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:34 Heat of formation + Delta-G solvation = 52.587025 kcal Electronic energy + Delta-G solvation = -25561.149794 eV Core-core repulsion = 21574.399591 eV Total energy + Delta-G solvation = -3986.750203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.29986 -43.32113 -40.84076 -40.07706 -37.33294 -36.55432 -35.51556 -34.73871 -33.18614 -31.53946 -28.38482 -27.25239 -26.88684 -26.83341 -25.05963 -24.49962 -23.45258 -21.79948 -21.07722 -20.14705 -19.61841 -19.18697 -18.65649 -18.44784 -17.91310 -17.50936 -16.94273 -16.49300 -16.29743 -16.21587 -16.06879 -15.35356 -15.29900 -15.22043 -14.65139 -14.42353 -14.19856 -13.59079 -13.37712 -13.09760 -12.98713 -12.85164 -12.70911 -12.67179 -12.24588 -12.10976 -12.06827 -11.94091 -11.73306 -11.60917 -11.55857 -11.48365 -11.36452 -10.75832 -10.70416 -10.13191 -10.05665 -8.29040 -6.32004 -0.02803 0.24706 0.99922 1.35598 1.37851 1.48092 1.51754 1.65796 1.89567 2.22532 2.36911 2.88119 3.01804 3.06984 3.16875 3.17611 3.28527 3.42716 3.59068 3.80420 3.93841 4.06822 4.42625 4.49970 4.53759 4.57883 4.64872 4.65653 4.81197 4.82491 4.85631 4.86916 4.91829 5.05253 5.37464 5.49063 5.54493 5.64286 5.69788 6.25831 6.52755 6.58874 6.75410 7.27162 7.30805 7.33405 8.86544 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002207 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.033409 B =12685.658276 C =13668.844981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.117 4.117 11 C 0.523 3.477 12 O -0.568 6.568 13 N -0.669 5.669 14 C 0.093 3.907 15 C -0.097 4.097 16 C -0.157 4.157 17 C 0.597 3.403 18 O -0.494 6.494 19 N -0.599 5.599 20 C 0.382 3.618 21 N -0.316 5.316 22 N -0.326 5.326 23 C 0.173 3.827 24 O -0.235 6.235 25 C -0.064 4.064 26 C -0.097 4.097 27 H 0.266 0.734 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.425 0.575 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.445 0.555 36 H 0.324 0.676 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.379 -5.953 0.125 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.311 3.689 12 O -0.446 6.446 13 N -0.320 5.320 14 C 0.004 3.996 15 C -0.136 4.136 16 C -0.161 4.161 17 C 0.384 3.616 18 O -0.363 6.363 19 N -0.259 5.259 20 C 0.081 3.919 21 N -0.171 5.171 22 N -0.169 5.169 23 C -0.059 4.059 24 O -0.113 6.113 25 C -0.102 4.102 26 C -0.137 4.137 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.264 0.736 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.287 0.713 36 H 0.339 0.661 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 29.318 -7.163 0.098 30.180 hybrid contribution -0.863 2.261 0.009 2.420 sum 28.455 -4.902 0.107 28.874 Atomic orbital electron populations 1.70035 1.07888 1.28030 1.52633 1.25849 0.95501 1.03005 0.94390 0.85802 0.79335 0.79330 0.79069 1.19455 1.20796 1.18078 1.21462 0.91478 0.93613 1.50107 0.93251 1.19222 0.93683 0.93810 0.96548 1.21497 0.88906 0.99945 1.05282 1.21188 0.90734 0.83061 0.73888 1.90631 1.70983 1.32819 1.50145 1.44587 1.03019 1.09243 1.75139 1.22595 0.80548 0.98974 0.97504 1.24951 0.90193 1.01574 0.96915 1.23256 0.86855 1.03190 1.02798 1.18793 0.86614 0.81724 0.74455 1.90896 1.69980 1.30508 1.44869 1.42406 0.97765 1.13078 1.72634 1.23583 0.87672 0.81450 0.99224 1.75202 0.96397 1.22512 1.22983 1.74301 1.11318 1.13136 1.18164 1.30767 0.86018 0.91509 0.97602 1.84869 1.18520 1.35995 1.71956 1.23985 0.87581 0.93699 1.04953 1.24470 0.90368 1.01636 0.97176 0.92495 0.96950 0.97094 0.87783 0.87789 0.73586 0.88769 0.89647 0.71286 0.66129 0.88201 0.88144 0.89604 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.94 45.09 27.47 68.60 1.88 46.97 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 7 C -0.53 -29.30 9.66 25.60 0.25 -29.06 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 9 C 0.01 0.25 3.33 29.85 0.10 0.35 16 10 C -0.12 -3.91 5.64 29.85 0.17 -3.75 16 11 C 0.52 15.70 7.83 87.66 0.69 16.39 16 12 O -0.57 -21.17 15.86 -3.03 -0.05 -21.22 16 13 N -0.67 -13.50 5.71 -474.69 -2.71 -16.21 16 14 C 0.09 1.65 3.79 -7.14 -0.03 1.63 16 15 C -0.10 -1.61 7.88 31.89 0.25 -1.36 16 16 C -0.16 -2.43 3.50 -62.85 -0.22 -2.65 16 17 C 0.60 11.56 7.90 87.66 0.69 12.25 16 18 O -0.49 -13.66 15.81 -3.03 -0.05 -13.71 16 19 N -0.60 -9.29 5.39 -423.21 -2.28 -11.57 16 20 C 0.38 7.45 9.08 178.91 1.62 9.08 16 21 N -0.32 -8.23 10.46 -173.30 -1.81 -10.04 16 22 N -0.33 -6.85 12.21 -175.19 -2.14 -8.99 16 23 C 0.17 1.73 13.37 130.50 1.74 3.47 16 24 O -0.23 -3.16 10.90 -8.64 -0.09 -3.25 16 25 C -0.06 -0.88 7.78 30.60 0.24 -0.64 16 26 C -0.10 -1.62 7.77 31.08 0.24 -1.38 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.01 0.59 7.16 -2.38 -0.02 0.57 16 29 H 0.01 0.51 7.53 -2.38 -0.02 0.50 16 30 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 31 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.43 5.84 8.83 -92.71 -0.82 5.02 16 33 H 0.09 1.39 7.91 -2.39 -0.02 1.37 16 34 H 0.09 1.58 7.97 -2.39 -0.02 1.56 16 35 H 0.45 3.93 8.82 -92.71 -0.82 3.11 16 36 H 0.32 -1.37 8.06 -2.91 -0.02 -1.40 16 37 H 0.10 1.19 7.95 -2.39 -0.02 1.17 16 38 H 0.10 1.20 7.91 -2.38 -0.02 1.18 16 39 H 0.09 1.59 7.97 -2.39 -0.02 1.57 16 40 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 Total: -1.00 -85.00 352.12 -1.32 -86.32 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -0.58 Total: 4.10 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.21 Total: 5.37 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -8.65 Total: -104.58 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.19 Total: -38.18 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -85.00 -1.32 -86.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.910 kcal (2) G-P(sol) polarization free energy of solvation -85.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds