Wall clock time and date at job start Fri Apr 10 2020 18:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47205 * 126.97511 * 3 2 1 5 5 C 1.42894 * 114.00244 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47063 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47277 * 64.99782 * 6 5 4 8 8 C 1.34781 * 120.00327 * 179.97438 * 7 6 5 9 9 O 1.21364 * 119.99337 * 0.02562 * 8 7 6 10 10 C 1.49337 * 120.00373 * 179.97438 * 8 7 6 11 11 O 1.21389 * 119.99697 * 0.02562 * 10 8 7 12 12 N 1.34768 * 120.00105 * 179.97438 * 10 8 7 13 13 C 1.39932 * 120.00299 * 179.97438 * 12 10 8 14 14 C 1.40466 * 125.97706 * 0.02562 * 13 12 10 15 15 C 1.35222 * 107.86479 * 179.71737 * 14 13 12 16 16 N 1.34986 * 107.87618 * 0.42340 * 15 14 13 17 17 C 1.46495 * 125.97298 * 179.83859 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71954 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31275 * 125.98291 * 179.97438 * 13 12 10 27 27 H 4.38444 * 5.44351 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.47154 * 6.97576 * 3 2 1 29 29 H 1.09001 * 109.47434 * 246.97438 * 3 2 1 30 30 H 1.08999 * 109.47594 * 59.99506 * 5 4 3 31 31 H 1.09008 * 109.46875 * 300.00188 * 5 4 3 32 32 H 1.08996 * 109.47125 * 304.99841 * 6 5 4 33 33 H 1.09006 * 109.46662 * 184.99624 * 6 5 4 34 34 H 0.97003 * 119.99851 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00090 * 0.02562 * 12 10 8 36 36 H 1.07996 * 126.06883 * 359.97438 * 14 13 12 37 37 H 1.07998 * 126.06003 * 180.26767 * 15 14 13 38 38 H 1.09000 * 109.47378 * 4.71613 * 17 16 15 39 39 H 1.09001 * 109.47153 * 244.71734 * 17 16 15 40 40 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.8112 -1.0764 5 6 4.5464 0.8793 -1.1669 6 6 4.9405 1.7692 -2.3475 7 7 4.5023 3.1433 -2.0908 8 6 4.7435 4.1085 -3.0001 9 8 5.3233 3.8391 -4.0317 10 6 4.2963 5.5092 -2.7388 11 8 3.7160 5.7785 -1.7071 12 7 4.5380 6.4744 -3.6478 13 6 4.1185 7.7868 -3.4032 14 6 3.4395 8.2363 -2.2586 15 6 3.2195 9.5629 -2.4011 16 7 3.7288 9.9418 -3.5923 17 6 3.7035 11.2974 -4.1470 18 6 5.1074 11.7277 -4.4865 19 1 5.9356 11.0583 -4.3066 20 6 5.3344 12.9761 -5.0257 21 7 6.5601 13.3536 -5.3168 22 14 3.9019 14.1341 -5.3361 23 1 3.3780 13.9164 -6.7085 24 1 2.8265 13.8673 -4.3475 25 1 4.3626 15.5392 -5.1992 26 7 4.2915 8.8135 -4.2027 27 1 -1.0500 0.0000 0.0003 28 1 3.0098 -1.0193 -0.1248 29 1 3.0092 0.4028 0.9458 30 1 4.9494 -0.1224 -1.3161 31 1 4.9494 1.2994 -0.2452 32 1 4.4645 1.3997 -3.2557 33 1 6.0234 1.7502 -2.4711 34 1 4.0393 3.3587 -1.2661 35 1 5.0020 6.2593 -4.4720 36 1 3.1489 7.6308 -1.4129 37 1 2.7220 10.2048 -1.6892 38 1 3.2811 11.9829 -3.4122 39 1 3.0917 11.3096 -5.0490 40 1 6.7203 14.2334 -5.6925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320051107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:38 Heat of formation + Delta-G solvation = 10.881984 kcal Electronic energy + Delta-G solvation = -24857.405202 eV Core-core repulsion = 20868.846532 eV Total energy + Delta-G solvation = -3988.558669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46308 -41.52589 -39.82387 -39.09244 -36.77428 -35.91386 -35.17949 -34.09877 -33.14397 -31.06157 -30.97320 -29.21675 -27.79727 -26.48407 -24.44772 -23.50340 -22.56936 -21.80233 -21.08915 -19.67841 -19.26338 -19.11842 -18.30230 -17.91919 -17.82053 -17.21483 -17.09430 -16.84844 -16.36499 -16.27776 -15.82525 -15.71887 -15.16480 -15.06825 -14.83906 -14.45919 -14.18689 -13.90897 -13.84443 -13.55138 -13.34108 -13.10161 -12.75267 -12.61481 -12.51259 -12.21457 -11.82728 -11.72854 -11.53010 -11.49222 -11.47411 -10.87688 -10.81718 -10.51368 -10.37240 -9.85328 -9.21502 -8.37119 -6.47908 0.04084 0.85629 1.12172 1.36978 1.40636 1.49266 1.52184 1.73272 1.83676 1.84264 2.25065 2.29424 2.57927 2.92308 2.95542 3.25995 3.58388 3.86890 3.94816 4.16886 4.20241 4.34355 4.48613 4.55187 4.56189 4.63397 4.65670 4.80747 4.82201 4.84214 4.95517 5.05379 5.10808 5.23788 5.74213 5.78463 5.98231 6.12329 6.14282 6.38174 6.54590 6.58294 6.62081 6.78237 6.92642 7.14936 8.79929 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.002006 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.252630 B =13953.366276 C =14721.531742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.234 4.234 3 C 0.169 3.831 4 O -0.409 6.409 5 C 0.051 3.949 6 C 0.115 3.885 7 N -0.679 5.679 8 C 0.523 3.477 9 O -0.538 6.538 10 C 0.516 3.484 11 O -0.507 6.507 12 N -0.603 5.603 13 C 0.258 3.742 14 C -0.289 4.289 15 C 0.066 3.934 16 N -0.340 5.340 17 C 0.238 3.762 18 C -0.549 4.549 19 H 0.025 0.975 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.957 3.043 23 H -0.267 1.267 24 H -0.227 1.227 25 H -0.279 1.279 26 N -0.344 5.344 27 H 0.245 0.755 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.422 0.578 35 H 0.427 0.573 36 H 0.177 0.823 37 H 0.217 0.783 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 -27.187 13.509 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.234 4.234 3 C 0.094 3.906 4 O -0.330 6.330 5 C -0.025 4.025 6 C -0.007 4.007 7 N -0.332 5.332 8 C 0.302 3.698 9 O -0.415 6.415 10 C 0.297 3.703 11 O -0.380 6.380 12 N -0.252 5.252 13 C 0.004 3.996 14 C -0.320 4.320 15 C -0.082 4.082 16 N -0.122 5.122 17 C 0.118 3.882 18 C -0.587 4.587 19 H 0.044 0.956 20 C -0.186 4.186 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.192 1.192 24 H -0.149 1.149 25 H -0.204 1.204 26 N -0.174 5.174 27 H 0.262 0.738 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.260 0.740 35 H 0.265 0.735 36 H 0.194 0.806 37 H 0.233 0.767 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.520 -26.517 12.186 30.697 hybrid contribution -0.155 0.391 0.216 0.473 sum -9.675 -26.126 12.403 30.496 Atomic orbital electron populations 1.25846 0.97065 0.98703 0.97741 1.23321 0.95318 1.02181 1.02608 1.19314 0.83817 0.96453 0.90998 1.87965 1.22484 1.70869 1.51656 1.22950 0.80417 1.00932 0.98190 1.21814 1.01463 0.78184 0.99289 1.45687 1.57374 1.08385 1.21758 1.19422 0.80615 0.85315 0.84475 1.90801 1.41554 1.82649 1.26518 1.20388 0.80109 0.86478 0.83277 1.90682 1.39454 1.82319 1.25590 1.42148 1.56080 1.03800 1.23164 1.19386 0.99514 0.85283 0.95461 1.21799 1.13294 0.94926 1.01940 1.23328 0.98995 0.96506 0.89392 1.48588 1.41712 1.07420 1.14476 1.19955 0.97129 0.74633 0.96477 1.21239 0.92212 1.01261 1.43949 0.95619 1.25950 0.99380 0.99510 0.93740 1.70055 1.22812 1.21411 1.43831 0.85601 0.78946 0.77373 0.80332 1.19216 1.14910 1.20384 1.77384 1.24289 0.92646 1.23121 0.73824 0.88590 0.88887 0.87895 0.89956 0.90618 0.87450 0.74040 0.73463 0.80618 0.76673 0.89435 0.93651 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 19.25 74.32 1.43 -0.91 16 2 C -0.23 -3.53 13.73 31.12 0.43 -3.10 16 3 C 0.17 1.61 6.41 70.17 0.45 2.06 16 4 O -0.41 -5.34 10.25 -148.98 -1.53 -6.86 16 5 C 0.05 0.33 6.07 71.98 0.44 0.76 16 6 C 0.11 1.33 6.06 86.38 0.52 1.86 16 7 N -0.68 -11.76 5.50 -464.52 -2.55 -14.31 16 8 C 0.52 12.80 7.89 87.23 0.69 13.49 16 9 O -0.54 -15.40 16.48 -3.29 -0.05 -15.46 16 10 C 0.52 15.08 7.85 87.24 0.69 15.77 16 11 O -0.51 -15.58 13.60 -3.37 -0.05 -15.62 16 12 N -0.60 -20.22 5.43 -308.90 -1.68 -21.90 16 13 C 0.26 10.38 8.10 133.40 1.08 11.46 16 14 C -0.29 -10.52 9.60 22.12 0.21 -10.30 16 15 C 0.07 2.33 11.43 83.51 0.95 3.28 16 16 N -0.34 -15.07 3.67 -351.85 -1.29 -16.36 16 17 C 0.24 10.88 5.33 85.63 0.46 11.33 16 18 C -0.55 -31.70 9.79 25.60 0.25 -31.45 16 19 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 20 C 0.01 0.74 5.47 84.65 0.46 1.20 16 21 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 22 Si 0.96 40.59 27.47 68.60 1.88 42.48 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.23 -8.17 6.54 99.48 0.65 -7.52 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 26 N -0.34 -16.21 12.42 -54.53 -0.68 -16.89 16 27 H 0.25 1.46 7.80 -4.42 -0.03 1.42 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.08 0.26 8.14 -2.38 -0.02 0.25 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.42 6.65 7.94 -92.71 -0.74 5.92 16 35 H 0.43 13.55 8.29 -92.71 -0.77 12.78 16 36 H 0.18 5.87 5.91 -2.91 -0.02 5.85 16 37 H 0.22 5.36 8.06 -2.91 -0.02 5.34 16 38 H 0.09 3.42 7.12 -2.39 -0.02 3.41 16 39 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.87 364.42 1.96 -79.92 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.46 Total: 27.62 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 8.06 Total: 15.46 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.90 Total: -127.53 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.63 Total: -37.94 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.48 kcal Total: -81.87 1.96 -79.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320051107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.799 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds