Wall clock time and date at job start Fri Apr 10 2020 18:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47031 * 2 1 4 4 C 1.46496 * 119.99976 * 274.94344 * 3 2 1 5 5 C 1.50701 * 109.47166 * 263.09623 * 4 3 2 6 6 H 1.08005 * 119.99765 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00651 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00330 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99552 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47235 * 89.99683 * 9 7 5 11 11 H 1.48497 * 109.47033 * 209.99603 * 9 7 5 12 12 H 1.48503 * 109.47195 * 329.99366 * 9 7 5 13 13 C 1.34773 * 119.99999 * 94.94039 * 3 2 1 14 14 O 1.21355 * 120.00241 * 3.69446 * 13 3 2 15 15 C 1.49372 * 120.00023 * 183.69899 * 13 3 2 16 16 O 1.21358 * 119.99715 * 354.27970 * 15 13 3 17 17 N 1.34780 * 120.00207 * 174.55700 * 15 13 3 18 18 C 1.39237 * 119.99887 * 184.82999 * 17 15 13 19 19 C 1.39441 * 119.62759 * 185.18200 * 18 17 15 20 20 C 1.38309 * 119.28777 * 179.97438 * 19 18 17 21 21 C 1.38784 * 118.57140 * 0.02562 * 20 19 18 22 22 C 1.39166 * 119.22075 * 359.97438 * 21 20 19 23 23 C 1.48151 * 119.68451 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00040 * 179.97438 * 23 22 21 25 25 O 1.21512 * 120.00237 * 0.02562 * 23 22 21 26 26 N 1.32022 * 119.63199 * 4.90574 * 18 17 15 27 27 H 1.09000 * 109.46992 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46957 * 60.00204 * 1 2 3 29 29 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47197 * 240.00223 * 2 1 3 31 31 H 1.09001 * 109.46957 * 119.99796 * 2 1 3 32 32 H 1.09001 * 109.47125 * 23.09162 * 4 3 2 33 33 H 1.08996 * 109.47470 * 143.09916 * 4 3 2 34 34 H 0.97004 * 120.00193 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99735 * 4.82962 * 17 15 13 36 36 H 1.08001 * 120.35681 * 359.95701 * 19 18 17 37 37 H 1.07998 * 120.71037 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.39138 * 179.97438 * 21 20 19 39 39 H 0.97004 * 120.00157 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00375 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5890 2.0262 -1.7339 6 1 4.3193 1.4860 -1.1496 7 6 3.9644 2.6397 -2.9102 8 7 5.2120 2.5684 -3.3199 9 14 2.7012 3.5733 -3.9211 10 1 2.6664 4.9916 -3.4825 11 1 3.0711 3.5084 -5.3578 12 1 1.3619 2.9620 -3.7267 13 6 2.3378 1.9831 1.1628 14 8 2.2850 1.3602 2.2030 15 6 2.7566 3.4169 1.1714 16 8 2.9097 4.0105 0.1240 17 7 2.9699 4.0497 2.3421 18 6 3.2618 5.4111 2.3545 19 6 3.5876 6.0353 3.5580 20 6 3.8769 7.3878 3.5621 21 6 3.8318 8.0799 2.3600 22 6 3.4993 7.3960 1.1944 23 6 3.4486 8.1245 -0.0946 24 7 3.1279 7.4684 -1.2273 25 8 3.6970 9.3134 -0.1307 26 7 3.2325 6.0953 1.2257 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5046 1.6642 -2.0136 33 1 1.8855 3.1527 -1.1150 34 1 5.4763 3.0003 -4.1473 35 1 2.9199 3.5568 3.1760 36 1 3.6135 5.4688 4.4772 37 1 4.1325 7.8944 4.4810 38 1 4.0520 9.1368 2.3294 39 1 2.9299 6.5192 -1.1986 40 1 3.0950 7.9452 -2.0713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320562299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:42 Heat of formation + Delta-G solvation = -35.643525 kcal Electronic energy + Delta-G solvation = -27449.237356 eV Core-core repulsion = 23458.661190 eV Total energy + Delta-G solvation = -3990.576167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05455 -40.03380 -38.83897 -37.79575 -35.96878 -34.53274 -33.70214 -32.64963 -32.29458 -30.75525 -30.28242 -27.78512 -25.54878 -24.92892 -23.30832 -22.71891 -21.42028 -21.05040 -19.38705 -18.29183 -17.27120 -17.12031 -16.86421 -16.69625 -16.16555 -15.96893 -15.59216 -15.24049 -14.94595 -14.77677 -14.24869 -14.13835 -13.96778 -13.70039 -13.28904 -13.25817 -13.06117 -12.56425 -12.30677 -12.25082 -12.03442 -11.82321 -11.11577 -10.90419 -10.80575 -10.68537 -10.44895 -10.42755 -10.23748 -9.99324 -9.62129 -9.57525 -9.49877 -8.75252 -8.51269 -8.35260 -7.97500 -6.11496 -4.09880 0.58709 1.13143 2.00891 2.52113 2.81148 3.23785 3.30497 3.30857 3.45768 3.66340 3.77291 3.99116 4.30540 4.35952 4.68424 4.78647 4.90794 4.96977 5.19638 5.22175 5.36704 5.38910 5.53420 5.64826 5.75998 6.00327 6.03763 6.09670 6.13169 6.38898 6.40537 6.56402 6.82355 6.87719 7.02261 7.10192 7.50713 7.51944 7.76079 7.87413 8.19563 8.36721 8.39825 8.51964 8.89426 9.48093 11.01688 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.005740 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.540228 B = 4876.682822 C = 6803.583828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.552 5.552 4 C 0.191 3.809 5 C -0.520 4.520 6 H 0.072 0.928 7 C 0.080 3.920 8 N -0.895 5.895 9 Si 0.878 3.122 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.557 6.557 15 C 0.489 3.511 16 O -0.400 6.400 17 N -0.646 5.646 18 C 0.371 3.629 19 C -0.184 4.184 20 C -0.054 4.054 21 C -0.148 4.148 22 C 0.110 3.890 23 C 0.580 3.420 24 N -0.827 5.827 25 O -0.548 6.548 26 N -0.454 5.454 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.264 0.736 35 H 0.425 0.575 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.422 0.578 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 4.796 11.976 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.282 5.282 4 C 0.071 3.929 5 C -0.558 4.558 6 H 0.090 0.910 7 C -0.123 4.123 8 N -0.534 5.534 9 Si 0.705 3.295 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.193 1.193 13 C 0.294 3.706 14 O -0.438 6.438 15 C 0.269 3.731 16 O -0.263 6.263 17 N -0.296 5.296 18 C 0.137 3.863 19 C -0.207 4.207 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.029 4.029 23 C 0.363 3.637 24 N -0.390 5.390 25 O -0.426 6.426 26 N -0.172 5.172 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.255 0.745 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.112 5.147 10.798 13.917 hybrid contribution -0.289 0.245 0.114 0.395 sum -7.401 5.392 10.912 14.245 Atomic orbital electron populations 1.22127 0.96160 1.01854 1.02128 1.21490 0.93748 0.82543 1.03697 1.47934 1.59294 1.13533 1.07465 1.20464 0.98810 0.93754 0.79848 1.21105 0.92747 1.34489 1.07506 0.91026 1.24747 0.95018 0.95424 0.97120 1.69888 1.16461 1.44178 1.22831 0.86847 0.82025 0.81226 0.79402 1.19761 1.21465 1.19300 1.19676 0.79298 0.87143 0.84457 1.90661 1.55202 1.65982 1.31929 1.20462 0.80275 0.88584 0.83788 1.90877 1.40174 1.66146 1.29090 1.43358 1.68958 1.05979 1.11293 1.18318 0.93602 0.84894 0.89445 1.21700 1.04987 0.96245 0.97793 1.21345 0.95202 0.93081 0.98321 1.21987 1.01004 1.02188 0.91875 1.20933 0.98555 0.89163 0.94279 1.17824 0.76326 0.85839 0.83708 1.43803 1.70222 1.15819 1.09163 1.90791 1.50566 1.14622 1.86583 1.67467 1.15255 1.06829 1.27637 0.92745 0.92358 0.91720 0.89665 0.89968 0.95230 0.91704 0.92607 0.73637 0.83916 0.83679 0.83468 0.74526 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.76 6.18 -4.04 -0.02 1.73 16 3 N -0.55 -10.86 2.48 -175.60 -0.43 -11.30 16 4 C 0.19 4.26 3.86 -5.20 -0.02 4.24 16 5 C -0.52 -13.88 8.86 -34.44 -0.31 -14.19 16 6 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 7 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 8 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 13 C 0.51 9.89 7.67 -11.62 -0.09 9.80 16 14 O -0.56 -10.67 15.97 5.49 0.09 -10.58 16 15 C 0.49 9.19 7.71 -11.62 -0.09 9.10 16 16 O -0.40 -8.61 10.66 5.49 0.06 -8.55 16 17 N -0.65 -9.57 5.38 -11.85 -0.06 -9.63 16 18 C 0.37 5.40 7.41 -155.00 -1.15 4.25 16 19 C -0.18 -1.91 9.94 -39.11 -0.39 -2.30 16 20 C -0.05 -0.51 10.16 -39.35 -0.40 -0.91 16 21 C -0.15 -1.82 9.63 -39.03 -0.38 -2.20 16 22 C 0.11 1.72 6.75 -83.03 -0.56 1.16 16 23 C 0.58 9.68 8.08 -12.19 -0.10 9.58 16 24 N -0.83 -13.15 8.86 30.60 0.27 -12.88 16 25 O -0.55 -9.97 17.15 5.36 0.09 -9.88 16 26 N -0.45 -7.64 7.09 -8.95 -0.06 -7.71 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.08 1.32 7.24 -51.93 -0.38 0.94 16 32 H 0.03 0.64 7.08 -51.93 -0.37 0.28 16 33 H 0.07 1.48 4.84 -51.93 -0.25 1.22 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.43 5.05 8.18 -40.82 -0.33 4.72 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.65 7.63 -52.48 -0.40 1.25 16 39 H 0.42 7.39 8.16 -40.82 -0.33 7.06 16 40 H 0.40 5.56 8.93 -40.82 -0.36 5.19 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -33.51 348.79 -6.46 -39.97 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -4.55 Total: 14.86 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: -3.22 Total: 20.53 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: 0.48 Total: -67.30 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.24 Total: -29.01 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.51 -6.46 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320562299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.329 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds