Wall clock time and date at job start Fri Apr 10 2020 18:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47031 * 2 1 4 4 C 1.46496 * 119.99976 * 274.94344 * 3 2 1 5 5 C 1.50701 * 109.47166 * 263.09623 * 4 3 2 6 6 H 1.08005 * 119.99765 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00651 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00330 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99552 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47235 * 89.99683 * 9 7 5 11 11 H 1.48497 * 109.47033 * 209.99603 * 9 7 5 12 12 H 1.48503 * 109.47195 * 329.99366 * 9 7 5 13 13 C 1.34773 * 119.99999 * 94.94039 * 3 2 1 14 14 O 1.21355 * 120.00241 * 3.69446 * 13 3 2 15 15 C 1.49372 * 120.00023 * 183.69899 * 13 3 2 16 16 O 1.21358 * 119.99715 * 354.27970 * 15 13 3 17 17 N 1.34780 * 120.00207 * 174.55700 * 15 13 3 18 18 C 1.39237 * 119.99887 * 184.82999 * 17 15 13 19 19 C 1.39441 * 119.62759 * 185.18200 * 18 17 15 20 20 C 1.38309 * 119.28777 * 179.97438 * 19 18 17 21 21 C 1.38784 * 118.57140 * 0.02562 * 20 19 18 22 22 C 1.39166 * 119.22075 * 359.97438 * 21 20 19 23 23 C 1.48151 * 119.68451 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00040 * 179.97438 * 23 22 21 25 25 O 1.21512 * 120.00237 * 0.02562 * 23 22 21 26 26 N 1.32022 * 119.63199 * 4.90574 * 18 17 15 27 27 H 1.09000 * 109.46992 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46957 * 60.00204 * 1 2 3 29 29 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47197 * 240.00223 * 2 1 3 31 31 H 1.09001 * 109.46957 * 119.99796 * 2 1 3 32 32 H 1.09001 * 109.47125 * 23.09162 * 4 3 2 33 33 H 1.08996 * 109.47470 * 143.09916 * 4 3 2 34 34 H 0.97004 * 120.00193 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99735 * 4.82962 * 17 15 13 36 36 H 1.08001 * 120.35681 * 359.95701 * 19 18 17 37 37 H 1.07998 * 120.71037 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.39138 * 179.97438 * 21 20 19 39 39 H 0.97004 * 120.00157 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00375 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5890 2.0262 -1.7339 6 1 4.3193 1.4860 -1.1496 7 6 3.9644 2.6397 -2.9102 8 7 5.2120 2.5684 -3.3199 9 14 2.7012 3.5733 -3.9211 10 1 2.6664 4.9916 -3.4825 11 1 3.0711 3.5084 -5.3578 12 1 1.3619 2.9620 -3.7267 13 6 2.3378 1.9831 1.1628 14 8 2.2850 1.3602 2.2030 15 6 2.7566 3.4169 1.1714 16 8 2.9097 4.0105 0.1240 17 7 2.9699 4.0497 2.3421 18 6 3.2618 5.4111 2.3545 19 6 3.5876 6.0353 3.5580 20 6 3.8769 7.3878 3.5621 21 6 3.8318 8.0799 2.3600 22 6 3.4993 7.3960 1.1944 23 6 3.4486 8.1245 -0.0946 24 7 3.1279 7.4684 -1.2273 25 8 3.6970 9.3134 -0.1307 26 7 3.2325 6.0953 1.2257 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5046 1.6642 -2.0136 33 1 1.8855 3.1527 -1.1150 34 1 5.4763 3.0003 -4.1473 35 1 2.9199 3.5568 3.1760 36 1 3.6135 5.4688 4.4772 37 1 4.1325 7.8944 4.4810 38 1 4.0520 9.1368 2.3294 39 1 2.9299 6.5192 -1.1986 40 1 3.0950 7.9452 -2.0713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320562299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:41 Heat of formation + Delta-G solvation = -62.225217 kcal Electronic energy + Delta-G solvation = -27450.390025 eV Core-core repulsion = 23458.661190 eV Total energy + Delta-G solvation = -3991.728835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26723 -41.35366 -40.14117 -39.15609 -37.47059 -35.82513 -34.91230 -34.64930 -33.32484 -32.18817 -31.37977 -29.60730 -26.85378 -26.00933 -24.60159 -24.41226 -22.63517 -22.27304 -20.73245 -19.52612 -19.11115 -18.66440 -18.21825 -17.97233 -17.44322 -17.01990 -16.97211 -16.60710 -16.27647 -16.07789 -15.89221 -15.50571 -15.23011 -15.07687 -14.71552 -14.38794 -14.33214 -14.14237 -13.85969 -13.52850 -13.20778 -13.13104 -12.69930 -12.58962 -12.21112 -12.07593 -11.93456 -11.85460 -11.72117 -11.63241 -10.94396 -10.86099 -10.78758 -10.67384 -10.01564 -9.62218 -9.41025 -8.23908 -6.26547 -0.43792 0.08463 0.66182 1.25093 1.40323 1.42068 1.50151 1.62848 2.22042 2.30732 2.39168 2.48529 2.88859 3.09083 3.13731 3.46372 3.78461 3.98665 4.07318 4.15005 4.23422 4.33839 4.45292 4.49975 4.69812 4.84788 4.91936 4.93660 5.02433 5.11033 5.20103 5.31302 5.45494 5.51414 5.62806 5.66509 5.87293 6.10434 6.22520 6.35990 6.59866 6.71120 6.90904 7.07923 7.15882 7.35961 8.92854 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.005740 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.540228 B = 4876.682822 C = 6803.583828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.561 5.561 4 C 0.205 3.795 5 C -0.512 4.512 6 H 0.022 0.978 7 C 0.021 3.979 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.242 1.242 13 C 0.507 3.493 14 O -0.556 6.556 15 C 0.486 3.514 16 O -0.437 6.437 17 N -0.631 5.631 18 C 0.338 3.662 19 C -0.156 4.156 20 C -0.039 4.039 21 C -0.138 4.138 22 C 0.074 3.926 23 C 0.576 3.424 24 N -0.826 5.826 25 O -0.572 6.572 26 N -0.488 5.488 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.438 0.562 36 H 0.186 0.814 37 H 0.196 0.804 38 H 0.158 0.842 39 H 0.416 0.584 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 5.482 14.351 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.291 5.291 4 C 0.083 3.917 5 C -0.551 4.551 6 H 0.041 0.959 7 C -0.177 4.177 8 N -0.589 5.589 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.217 1.217 12 H -0.165 1.165 13 C 0.290 3.710 14 O -0.438 6.438 15 C 0.266 3.734 16 O -0.304 6.304 17 N -0.282 5.282 18 C 0.105 3.895 19 C -0.179 4.179 20 C -0.065 4.065 21 C -0.160 4.160 22 C -0.064 4.064 23 C 0.360 3.640 24 N -0.388 5.388 25 O -0.451 6.451 26 N -0.206 5.206 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.280 0.720 36 H 0.204 0.796 37 H 0.214 0.786 38 H 0.175 0.825 39 H 0.247 0.753 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.812 5.828 13.233 16.933 hybrid contribution 0.324 -0.007 -0.425 0.535 sum -8.488 5.822 12.808 16.431 Atomic orbital electron populations 1.22049 0.93428 1.03737 1.01944 1.21732 0.95967 0.80856 1.03603 1.47989 1.59743 1.14680 1.06719 1.20144 0.95857 0.94498 0.81178 1.21234 0.94125 1.33006 1.06731 0.95936 1.25634 0.96986 0.96489 0.98559 1.70057 1.19053 1.46153 1.23667 0.85841 0.80306 0.80463 0.77082 1.18412 1.21723 1.16533 1.19911 0.79042 0.87676 0.84405 1.90642 1.55186 1.66209 1.31726 1.20469 0.80024 0.88319 0.84572 1.90854 1.42364 1.66660 1.30478 1.43130 1.68069 1.06459 1.10540 1.18706 0.95692 0.84532 0.90596 1.22184 1.01462 0.96719 0.97546 1.21911 0.93092 0.92553 0.98920 1.22285 0.99083 1.02748 0.91891 1.20865 1.01665 0.89228 0.94669 1.18163 0.75685 0.85721 0.84448 1.43801 1.69958 1.15375 1.09657 1.90757 1.51894 1.15423 1.87068 1.67229 1.16162 1.07623 1.29596 0.92949 0.92426 0.88803 0.89966 0.89904 0.93920 0.91473 0.92762 0.72037 0.79638 0.78649 0.82468 0.75308 0.75940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 3.18 6.18 86.38 0.53 3.72 16 3 N -0.56 -22.03 2.48 -827.83 -2.05 -24.08 16 4 C 0.20 9.10 3.86 85.63 0.33 9.43 16 5 C -0.51 -28.25 8.86 25.60 0.23 -28.02 16 6 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 7 C 0.02 1.18 5.47 84.66 0.46 1.64 16 8 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 9 Si 0.94 42.24 27.47 68.60 1.88 44.13 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 13 C 0.51 19.54 7.67 87.25 0.67 20.20 16 14 O -0.56 -20.87 15.97 -3.26 -0.05 -20.92 16 15 C 0.49 18.34 7.71 87.24 0.67 19.01 16 16 O -0.44 -19.24 10.66 -3.27 -0.03 -19.28 16 17 N -0.63 -17.98 5.38 -309.75 -1.67 -19.64 16 18 C 0.34 9.28 7.41 133.17 0.99 10.27 16 19 C -0.16 -2.61 9.94 22.58 0.22 -2.39 16 20 C -0.04 -0.57 10.16 22.42 0.23 -0.34 16 21 C -0.14 -3.06 9.63 22.62 0.22 -2.85 16 22 C 0.07 2.27 6.75 41.85 0.28 2.55 16 23 C 0.58 19.54 8.08 86.88 0.70 20.24 16 24 N -0.83 -26.99 8.86 -175.40 -1.55 -28.55 16 25 O -0.57 -21.01 17.15 -3.75 -0.06 -21.08 16 26 N -0.49 -16.35 7.09 -182.22 -1.29 -17.64 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 31 H 0.08 2.60 7.24 -2.39 -0.02 2.59 16 32 H 0.04 1.79 7.08 -2.39 -0.02 1.78 16 33 H 0.07 3.05 4.84 -2.39 -0.01 3.04 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.44 9.55 8.18 -92.71 -0.76 8.80 16 36 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.20 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.16 3.15 7.63 -2.91 -0.02 3.13 16 39 H 0.42 15.04 8.16 -92.71 -0.76 14.28 16 40 H 0.41 11.60 8.93 -92.71 -0.83 10.77 16 Total: -1.00 -77.51 348.79 0.48 -77.03 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: -1.26 Total: 37.92 kcal Atomic # 6 Polarization: 44.14 SS G_CDS: 6.27 Total: 50.41 kcal Atomic # 7 Polarization: -141.95 SS G_CDS: -6.26 Total: -148.22 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -0.15 Total: -61.28 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.13 kcal Total: -77.51 0.48 -77.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320562299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds