Wall clock time and date at job start Fri Apr 10 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.07703 * 2 1 4 4 C 1.32496 * 120.99217 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.18277 * 359.73944 * 4 3 2 6 6 C 1.39523 * 118.33195 * 0.49907 * 5 4 3 7 7 N 1.38920 * 120.52458 * 179.78047 * 6 5 4 8 8 C 1.34775 * 119.99927 * 185.11207 * 7 6 5 9 9 O 1.21347 * 120.00152 * 354.88498 * 8 7 6 10 10 C 1.49374 * 119.99862 * 174.60960 * 8 7 6 11 11 O 1.21355 * 120.00465 * 0.27531 * 10 8 7 12 12 N 1.34782 * 120.00213 * 180.27493 * 10 8 7 13 13 C 1.47419 * 125.64553 * 359.69289 * 12 10 8 14 14 C 1.55132 * 104.72157 * 155.81648 * 13 12 10 15 15 C 1.55156 * 101.48723 * 37.29524 * 14 13 12 16 16 O 1.42903 * 110.71886 * 82.69303 * 15 14 13 17 17 C 1.50699 * 110.87101 * 205.89773 * 15 14 13 18 18 H 1.07996 * 119.99383 * 118.48933 * 17 15 14 19 19 C 1.37870 * 120.00003 * 298.48298 * 17 15 14 20 20 N 1.31516 * 120.00098 * 184.97438 * 19 17 15 21 21 Si 1.86800 * 120.00339 * 4.97363 * 19 17 15 22 22 H 1.48504 * 109.46986 * 84.77808 * 21 19 17 23 23 H 1.48492 * 109.47500 * 204.78194 * 21 19 17 24 24 H 1.48501 * 109.47027 * 324.78271 * 21 19 17 25 25 C 1.47024 * 125.64999 * 179.97438 * 12 10 8 26 26 N 1.31724 * 119.08283 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47401 * 269.97998 * 1 2 3 28 28 H 1.09003 * 109.47623 * 29.98144 * 1 2 3 29 29 H 1.09005 * 109.46957 * 149.98254 * 1 2 3 30 30 H 1.07994 * 120.40859 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.82919 * 180.25288 * 5 4 3 32 32 H 0.96998 * 119.99487 * 5.11385 * 7 6 5 33 33 H 1.09004 * 110.36821 * 274.74656 * 13 12 10 34 34 H 1.09007 * 110.36767 * 37.06933 * 13 12 10 35 35 H 1.09003 * 111.19232 * 279.18890 * 14 13 12 36 36 H 1.09002 * 110.93801 * 155.28878 * 14 13 12 37 37 H 0.96696 * 113.99580 * 185.02584 * 16 15 14 38 38 H 0.96994 * 120.00462 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.88244 * 300.44259 * 25 12 10 40 40 H 1.09004 * 109.87776 * 61.45420 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1520 0.0000 4 6 3.4718 1.1962 -0.0005 5 6 4.1858 0.0126 0.0044 6 6 3.4762 -1.1887 -0.0009 7 7 4.1477 -2.4049 -0.0008 8 6 3.4562 -3.5565 -0.1100 9 8 2.2429 -3.5375 -0.1148 10 6 4.1833 -4.8557 -0.2312 11 8 5.3967 -4.8748 -0.2263 12 7 3.4918 -6.0069 -0.3459 13 6 2.0227 -6.1290 -0.3593 14 6 1.7444 -7.4583 -1.1090 15 6 2.9090 -8.3490 -0.6013 16 8 2.5908 -8.9217 0.6687 17 6 3.2369 -9.4263 -1.6028 18 1 4.2172 -9.4632 -2.0544 19 6 2.2856 -10.3646 -1.9423 20 7 2.6005 -11.3613 -2.7405 21 14 0.5492 -10.2204 -1.2687 22 1 -0.2423 -9.3072 -2.1317 23 1 -0.0881 -11.5615 -1.2515 24 1 0.5978 -9.6777 0.1128 25 6 4.0776 -7.3494 -0.4726 26 7 2.1473 -1.1512 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5141 30 1 3.9870 2.1454 -0.0001 31 1 5.2658 0.0176 0.0083 32 1 5.1143 -2.4251 0.0778 33 1 1.6367 -6.1770 0.6590 34 1 1.5773 -5.2910 -0.8956 35 1 1.7999 -7.3207 -2.1889 36 1 0.7794 -7.8742 -0.8193 37 1 3.3149 -9.4248 1.0657 38 1 1.9311 -12.0212 -2.9797 39 1 4.7061 -7.3972 -1.3618 40 1 4.6700 -7.5804 0.4128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326049063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:02 Heat of formation + Delta-G solvation = -56.109050 kcal Electronic energy + Delta-G solvation = -26782.155092 eV Core-core repulsion = 22790.691473 eV Total energy + Delta-G solvation = -3991.463619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60740 -41.68265 -40.22348 -39.12979 -37.09830 -36.09699 -34.52574 -34.45344 -33.04475 -32.09999 -30.17984 -29.49806 -28.11716 -26.44893 -24.71073 -24.01032 -23.28536 -21.80078 -21.25889 -19.69944 -19.22810 -18.95039 -18.02879 -17.75531 -17.51456 -16.93789 -16.63621 -16.46389 -16.44073 -16.11161 -15.65055 -15.38173 -15.07295 -14.87343 -14.73710 -14.27903 -14.17292 -14.08691 -13.70319 -13.51041 -13.21763 -13.18868 -12.99522 -12.69017 -12.59316 -12.42521 -12.19790 -11.86742 -11.80855 -11.13547 -11.01450 -10.96671 -10.81030 -10.40564 -10.09318 -9.98018 -9.86687 -8.37833 -6.53181 -0.37884 0.02104 0.45716 0.85814 1.38170 1.46017 1.66565 1.93029 2.07231 2.38419 2.76825 2.81741 2.98072 3.09416 3.29926 3.50593 3.64158 3.69250 3.93108 4.16006 4.17831 4.28354 4.33034 4.45118 4.56675 4.69719 4.71316 4.74202 4.80315 4.91059 4.94012 5.01006 5.09196 5.33474 5.45185 5.46734 5.51452 5.99888 6.04645 6.16632 6.42925 6.57909 6.67111 7.11913 7.15533 7.28646 8.75988 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.003084 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.819798 B = 9076.259264 C = 9876.225786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.329 3.671 3 N -0.553 5.553 4 C 0.172 3.828 5 C -0.249 4.249 6 C 0.381 3.619 7 N -0.622 5.622 8 C 0.510 3.490 9 O -0.456 6.456 10 C 0.517 3.483 11 O -0.544 6.544 12 N -0.577 5.577 13 C 0.110 3.890 14 C -0.133 4.133 15 C 0.218 3.782 16 O -0.572 6.572 17 C -0.550 4.550 18 H 0.043 0.957 19 C 0.040 3.960 20 N -0.933 5.933 21 Si 0.933 3.067 22 H -0.270 1.270 23 H -0.307 1.307 24 H -0.215 1.215 25 C 0.101 3.899 26 N -0.550 5.550 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.215 0.785 31 H 0.189 0.811 32 H 0.443 0.557 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.379 0.621 38 H 0.269 0.731 39 H 0.066 0.934 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 25.152 7.533 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 N -0.271 5.271 4 C 0.009 3.991 5 C -0.274 4.274 6 C 0.142 3.858 7 N -0.272 5.272 8 C 0.290 3.710 9 O -0.324 6.324 10 C 0.300 3.700 11 O -0.423 6.423 12 N -0.309 5.309 13 C -0.011 4.011 14 C -0.171 4.171 15 C 0.177 3.823 16 O -0.380 6.380 17 C -0.588 4.588 18 H 0.062 0.938 19 C -0.161 4.161 20 N -0.572 5.572 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.235 1.235 24 H -0.137 1.137 25 C -0.021 4.021 26 N -0.272 5.272 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.206 0.794 32 H 0.286 0.714 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.228 0.772 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.118 25.233 7.330 26.300 hybrid contribution 1.482 -1.203 -0.120 1.912 sum 0.365 24.030 7.209 25.091 Atomic orbital electron populations 1.20639 0.84197 1.04584 1.04660 1.23645 0.99244 0.82252 0.88739 1.68366 1.11548 1.29599 1.17590 1.23796 0.88688 0.99628 0.87029 1.22693 1.04570 0.90946 1.09160 1.18982 0.89328 0.86132 0.91372 1.43065 1.12589 1.02207 1.69358 1.20190 0.87608 0.85061 0.78150 1.90835 1.13314 1.86186 1.42034 1.19653 0.86842 0.84201 0.79305 1.90740 1.13372 1.86822 1.51376 1.48421 1.09469 1.05884 1.67167 1.22705 0.78249 0.98413 1.01781 1.23178 0.99051 0.94349 1.00485 1.19801 0.90402 0.89424 0.82660 1.86459 1.44081 1.72059 1.35412 1.21376 1.00011 1.12323 1.25074 0.93832 1.25704 1.03171 0.93568 0.93608 1.70045 1.36407 1.14012 1.36706 0.86175 0.79072 0.76368 0.82568 1.19604 1.23541 1.13737 1.22763 0.97421 0.80136 1.01787 1.68187 1.08271 1.31800 1.18943 0.88618 0.88094 0.90108 0.76839 0.79387 0.71449 0.89997 0.88035 0.89911 0.90202 0.77220 0.92238 0.91557 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.32 71.24 0.73 -0.66 16 2 C 0.33 7.36 7.64 138.77 1.06 8.42 16 3 N -0.55 -10.56 10.33 -188.06 -1.94 -12.50 16 4 C 0.17 2.17 11.29 84.59 0.96 3.12 16 5 C -0.25 -3.25 10.04 22.58 0.23 -3.02 16 6 C 0.38 8.25 7.45 133.02 0.99 9.24 16 7 N -0.62 -13.57 5.37 -309.32 -1.66 -15.23 16 8 C 0.51 14.69 7.81 87.25 0.68 15.37 16 9 O -0.46 -14.90 12.08 -3.24 -0.04 -14.94 16 10 C 0.52 16.82 7.91 87.24 0.69 17.51 16 11 O -0.54 -18.79 16.81 -3.26 -0.05 -18.84 16 12 N -0.58 -20.27 3.32 -813.00 -2.70 -22.97 16 13 C 0.11 3.74 6.07 86.93 0.53 4.27 16 14 C -0.13 -5.22 4.79 32.06 0.15 -5.07 16 15 C 0.22 9.28 0.67 -10.35 -0.01 9.27 16 16 O -0.57 -23.04 10.54 -148.98 -1.57 -24.61 16 17 C -0.55 -29.01 8.82 25.60 0.23 -28.78 16 18 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 19 C 0.04 2.22 5.47 84.65 0.46 2.68 16 20 N -0.93 -55.77 13.96 21.44 0.30 -55.47 16 21 Si 0.93 42.81 23.90 68.60 1.64 44.45 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.21 -9.32 5.47 99.48 0.54 -8.78 16 25 C 0.10 3.90 6.21 86.73 0.54 4.43 16 26 N -0.55 -14.52 7.95 -185.26 -1.47 -15.99 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.44 7.14 8.20 -92.71 -0.76 6.38 16 33 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.10 3.30 6.14 -2.38 -0.01 3.29 16 35 H 0.08 3.34 8.05 -2.39 -0.02 3.32 16 36 H 0.08 3.13 4.92 -2.39 -0.01 3.11 16 37 H 0.38 13.09 9.08 -74.06 -0.67 12.42 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.07 2.76 7.66 -2.39 -0.02 2.74 16 40 H 0.08 2.81 8.06 -2.38 -0.02 2.79 16 Total: -1.00 -72.84 335.33 -0.74 -73.58 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.48 Total: 25.73 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 7.24 Total: 36.79 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -7.48 Total: -122.16 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -1.66 Total: -58.40 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.64 Total: 44.45 kcal Total: -72.84 -0.74 -73.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326049063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.470 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds