Wall clock time and date at job start Fri Apr 10 2020 18:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47205 * 179.97438 * 227.21329 * 3 2 1 5 5 C 1.52992 * 109.47099 * 154.00005 * 4 3 2 6 6 H 1.08997 * 109.47332 * 304.99767 * 5 4 3 7 7 C 1.53003 * 109.46879 * 184.99913 * 5 4 3 8 8 O 1.42893 * 109.47389 * 305.00002 * 7 5 4 9 9 N 1.46494 * 109.47342 * 65.00038 * 5 4 3 10 10 C 1.34778 * 120.00367 * 204.99954 * 9 5 4 11 11 O 1.21370 * 119.99670 * 359.97438 * 10 9 5 12 12 C 1.49307 * 120.00317 * 180.02562 * 10 9 5 13 13 O 1.21401 * 119.99840 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99969 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00141 * 179.97438 * 14 12 10 16 16 C 1.40721 * 126.09719 * 359.97006 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.77792 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10319 * 180.02562 * 15 14 12 28 28 H 1.08998 * 109.47057 * 158.78963 * 1 2 3 29 29 H 1.09000 * 109.47086 * 278.78529 * 1 2 3 30 30 H 1.08997 * 109.47071 * 38.78449 * 1 2 3 31 31 H 1.09000 * 109.46511 * 33.99514 * 4 3 2 32 32 H 1.08997 * 109.46734 * 274.00289 * 4 3 2 33 33 H 1.09004 * 109.46871 * 65.00421 * 7 5 4 34 34 H 1.09000 * 109.47343 * 184.99841 * 7 5 4 35 35 H 0.96697 * 114.00481 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00024 * 25.00059 * 9 5 4 37 37 H 0.96999 * 119.99957 * 359.97438 * 14 12 10 38 38 H 1.07999 * 125.81644 * 0.02979 * 16 15 14 39 39 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 40 40 H 1.07995 * 126.25065 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0016 0.0005 5 6 4.6273 1.2985 -0.6317 6 1 4.1929 1.4136 -1.6247 7 6 6.1522 1.2461 -0.7449 8 8 6.7164 0.9789 0.5404 9 7 4.2386 2.4356 0.2061 10 6 4.1110 3.6617 -0.3388 11 8 4.3186 3.8238 -1.5235 12 6 3.7155 4.8208 0.5152 13 8 3.5083 4.6587 1.7004 14 7 3.5885 6.0469 -0.0296 15 6 3.2163 7.1359 0.7727 16 6 2.9453 7.0945 2.1530 17 7 2.6371 8.3031 2.5494 18 7 2.6898 9.1593 1.4422 19 6 2.4284 10.5071 1.4499 20 1 2.5957 11.0947 0.5593 21 6 1.9537 11.1165 2.6056 22 7 1.8593 10.4281 3.7194 23 14 1.4504 12.9152 2.5739 24 1 -0.0132 13.0156 2.3441 25 1 1.7922 13.5478 3.8732 26 1 2.1723 13.6120 1.4791 27 6 3.0522 8.4177 0.3558 28 1 -0.3633 -0.9580 -0.3718 29 1 -0.3633 0.1570 1.0156 30 1 -0.3633 0.8011 -0.6437 31 1 4.4821 -0.8501 -0.5740 32 1 4.4810 -0.0698 1.0258 33 1 6.4380 0.4555 -1.4388 34 1 6.5224 2.2032 -1.1124 35 1 7.6822 0.9313 0.5439 36 1 4.0731 2.3062 1.1531 37 1 3.7544 6.1764 -0.9765 38 1 2.9887 6.2159 2.7795 39 1 1.5285 10.8534 4.5259 40 1 3.1846 8.7835 -0.6517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326088104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:10 Heat of formation + Delta-G solvation = 11.983575 kcal Electronic energy + Delta-G solvation = -25670.038637 eV Core-core repulsion = 21681.527736 eV Total energy + Delta-G solvation = -3988.510901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57135 -39.60425 -38.30640 -37.37406 -35.63825 -34.49685 -33.83752 -33.14812 -31.46739 -30.31355 -28.84361 -28.00505 -26.02487 -25.47447 -24.10927 -21.54877 -20.92848 -20.34005 -19.46359 -18.35486 -17.82924 -17.39528 -16.99122 -16.28466 -15.79931 -15.52058 -15.30085 -15.11669 -14.70175 -14.47117 -14.09222 -13.99152 -13.79601 -13.60672 -13.52500 -13.38550 -13.12871 -13.00716 -12.96330 -12.14086 -11.86513 -11.74076 -11.55912 -11.31137 -11.20399 -10.85636 -10.54538 -10.40769 -10.26786 -9.93855 -9.84560 -9.28975 -9.22460 -9.09876 -8.86353 -8.11757 -6.76835 -6.60270 -4.27185 1.67090 2.52652 2.55021 2.64643 2.93643 3.04182 3.09348 3.33625 3.72126 3.75761 3.93664 3.98188 4.02086 4.38323 4.56281 4.64957 4.80410 4.97740 4.98652 5.02524 5.08867 5.29541 5.32838 5.40194 5.42721 5.53148 5.68747 5.77966 6.20502 6.22139 6.37456 6.77008 6.90147 6.93737 7.17038 7.24477 7.31082 7.52789 7.77715 7.87045 8.11755 8.19558 8.50417 8.70694 9.32319 9.60752 10.35809 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002502 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.976561 B =11189.674082 C =11870.573248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.180 4.180 3 C -0.197 4.197 4 C -0.006 4.006 5 C 0.153 3.847 6 H 0.106 0.894 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.689 5.689 10 C 0.517 3.483 11 O -0.534 6.534 12 C 0.484 3.516 13 O -0.520 6.520 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.381 0.619 36 H 0.416 0.584 37 H 0.409 0.591 38 H 0.178 0.822 39 H 0.276 0.724 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -18.243 -8.927 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.180 4.180 3 C -0.197 4.197 4 C -0.042 4.042 5 C 0.048 3.952 6 H 0.124 0.876 7 C -0.016 4.016 8 O -0.373 6.373 9 N -0.343 5.343 10 C 0.299 3.701 11 O -0.410 6.410 12 C 0.265 3.735 13 O -0.398 6.398 14 N -0.227 5.227 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.253 0.747 37 H 0.244 0.756 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.473 -17.487 -7.521 19.350 hybrid contribution 0.647 0.266 -1.072 1.280 sum 4.119 -17.221 -8.593 19.682 Atomic orbital electron populations 1.18882 0.84723 1.02886 1.03338 1.22431 0.93952 1.00516 1.01086 1.22108 0.93456 1.02151 1.02001 1.18824 0.84678 0.96950 1.03791 1.21127 0.92777 0.84977 0.96346 0.87570 1.22639 0.93237 1.00390 0.85365 1.86467 1.25608 1.94920 1.30334 1.45657 1.68158 1.06531 1.13936 1.20314 0.77648 0.84476 0.87683 1.90716 1.49817 1.84772 1.15724 1.19627 0.82194 0.83815 0.87899 1.90661 1.49982 1.83880 1.15231 1.42138 1.62989 1.05562 1.12016 1.17258 1.21738 0.86281 0.92174 1.24147 1.05967 0.97391 0.92718 1.78255 1.25414 0.98145 1.07345 1.44562 1.36058 1.06493 1.03467 1.19926 1.45437 0.79658 1.00479 0.86443 1.25667 0.95809 1.01056 0.94559 1.70210 1.32977 1.36446 0.99701 0.85791 0.79340 0.80246 0.78666 1.19588 1.20063 1.18727 1.21303 1.17022 0.90621 0.93885 0.90327 0.90020 0.90054 0.88130 0.87995 0.92285 0.92414 0.77175 0.74672 0.75647 0.80571 0.91369 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.36 10.32 34.37 0.35 0.00 16 2 C -0.18 -2.09 14.13 -37.12 -0.52 -2.61 16 3 C -0.20 -2.24 13.06 -37.12 -0.48 -2.73 16 4 C -0.01 -0.05 4.97 -29.52 -0.15 -0.20 16 5 C 0.15 1.53 2.34 -67.94 -0.16 1.37 16 6 H 0.11 1.13 7.58 -51.93 -0.39 0.74 16 7 C 0.06 0.51 6.85 37.16 0.25 0.77 16 8 O -0.57 -4.63 12.83 -35.23 -0.45 -5.09 16 9 N -0.69 -8.93 4.72 -54.29 -0.26 -9.18 16 10 C 0.52 8.13 7.85 -11.65 -0.09 8.04 16 11 O -0.53 -8.81 16.14 5.48 0.09 -8.72 16 12 C 0.48 9.08 7.85 -11.65 -0.09 8.99 16 13 O -0.52 -10.95 13.62 5.45 0.07 -10.87 16 14 N -0.58 -11.29 5.45 -10.46 -0.06 -11.34 16 15 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.56 10.41 30.81 0.32 -7.24 16 18 N -0.14 -3.81 3.73 -11.40 -0.04 -3.85 16 19 C -0.32 -8.49 10.24 -14.82 -0.15 -8.64 16 20 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.26 11.83 55.50 0.66 -20.60 16 23 Si 0.94 18.78 29.56 -169.99 -5.02 13.76 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.01 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.89 7.73 -51.93 -0.40 0.49 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.38 1.57 9.12 45.56 0.42 1.99 16 36 H 0.42 5.47 8.07 -40.82 -0.33 5.14 16 37 H 0.41 6.80 8.29 -40.82 -0.34 6.46 16 38 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 39 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -34.88 361.70 -5.19 -40.07 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -3.86 Total: 16.61 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.09 Total: 1.01 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.62 Total: -52.22 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.29 Total: -24.68 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.88 -5.19 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.054 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds