Wall clock time and date at job start Fri Apr 10 2020 18:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47205 * 179.97438 * 227.21329 * 3 2 1 5 5 C 1.52992 * 109.47099 * 154.00005 * 4 3 2 6 6 H 1.08997 * 109.47332 * 304.99767 * 5 4 3 7 7 C 1.53003 * 109.46879 * 184.99913 * 5 4 3 8 8 O 1.42893 * 109.47389 * 305.00002 * 7 5 4 9 9 N 1.46494 * 109.47342 * 65.00038 * 5 4 3 10 10 C 1.34778 * 120.00367 * 204.99954 * 9 5 4 11 11 O 1.21370 * 119.99670 * 359.97438 * 10 9 5 12 12 C 1.49307 * 120.00317 * 180.02562 * 10 9 5 13 13 O 1.21401 * 119.99840 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99969 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00141 * 179.97438 * 14 12 10 16 16 C 1.40721 * 126.09719 * 359.97006 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.77792 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10319 * 180.02562 * 15 14 12 28 28 H 1.08998 * 109.47057 * 158.78963 * 1 2 3 29 29 H 1.09000 * 109.47086 * 278.78529 * 1 2 3 30 30 H 1.08997 * 109.47071 * 38.78449 * 1 2 3 31 31 H 1.09000 * 109.46511 * 33.99514 * 4 3 2 32 32 H 1.08997 * 109.46734 * 274.00289 * 4 3 2 33 33 H 1.09004 * 109.46871 * 65.00421 * 7 5 4 34 34 H 1.09000 * 109.47343 * 184.99841 * 7 5 4 35 35 H 0.96697 * 114.00481 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00024 * 25.00059 * 9 5 4 37 37 H 0.96999 * 119.99957 * 359.97438 * 14 12 10 38 38 H 1.07999 * 125.81644 * 0.02979 * 16 15 14 39 39 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 40 40 H 1.07995 * 126.25065 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0016 0.0005 5 6 4.6273 1.2985 -0.6317 6 1 4.1929 1.4136 -1.6247 7 6 6.1522 1.2461 -0.7449 8 8 6.7164 0.9789 0.5404 9 7 4.2386 2.4356 0.2061 10 6 4.1110 3.6617 -0.3388 11 8 4.3186 3.8238 -1.5235 12 6 3.7155 4.8208 0.5152 13 8 3.5083 4.6587 1.7004 14 7 3.5885 6.0469 -0.0296 15 6 3.2163 7.1359 0.7727 16 6 2.9453 7.0945 2.1530 17 7 2.6371 8.3031 2.5494 18 7 2.6898 9.1593 1.4422 19 6 2.4284 10.5071 1.4499 20 1 2.5957 11.0947 0.5593 21 6 1.9537 11.1165 2.6056 22 7 1.8593 10.4281 3.7194 23 14 1.4504 12.9152 2.5739 24 1 -0.0132 13.0156 2.3441 25 1 1.7922 13.5478 3.8732 26 1 2.1723 13.6120 1.4791 27 6 3.0522 8.4177 0.3558 28 1 -0.3633 -0.9580 -0.3718 29 1 -0.3633 0.1570 1.0156 30 1 -0.3633 0.8011 -0.6437 31 1 4.4821 -0.8501 -0.5740 32 1 4.4810 -0.0698 1.0258 33 1 6.4380 0.4555 -1.4388 34 1 6.5224 2.2032 -1.1124 35 1 7.6822 0.9313 0.5439 36 1 4.0731 2.3062 1.1531 37 1 3.7544 6.1764 -0.9765 38 1 2.9887 6.2159 2.7795 39 1 1.5285 10.8534 4.5259 40 1 3.1846 8.7835 -0.6517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326088104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:09 Heat of formation + Delta-G solvation = -15.928027 kcal Electronic energy + Delta-G solvation = -25671.248975 eV Core-core repulsion = 21681.527736 eV Total energy + Delta-G solvation = -3989.721239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07404 -41.27045 -39.70374 -38.37684 -36.50582 -36.03492 -35.11605 -34.69998 -32.39063 -32.27821 -29.96131 -29.49081 -27.23679 -26.71411 -25.65265 -23.02086 -22.42532 -21.61842 -21.26210 -19.77707 -19.22456 -18.52184 -17.94047 -17.46733 -17.36413 -17.04024 -16.76473 -16.46958 -15.83409 -15.67827 -15.31215 -15.23622 -14.95889 -14.88922 -14.65453 -14.61308 -14.35888 -14.06259 -13.79277 -13.52945 -13.39768 -13.01934 -12.97536 -12.86022 -12.59072 -12.47158 -12.06912 -11.98393 -11.08795 -11.04957 -10.88254 -10.78488 -10.62173 -10.54207 -10.30122 -10.15108 -8.63865 -8.49986 -6.27656 0.25936 1.27433 1.28616 1.41807 1.59093 1.69505 1.71460 1.76652 2.01984 2.11409 2.51374 2.55912 2.91163 3.06115 3.27916 3.35517 3.51173 3.86220 4.07513 4.32320 4.38408 4.50559 4.51358 4.59625 4.67810 4.75017 4.80786 4.84804 4.94372 4.94513 4.97545 5.09541 5.19578 5.23226 5.29367 5.89101 5.98009 6.22927 6.44931 6.65638 6.70529 6.76319 6.91761 7.05394 7.40554 7.61323 8.49533 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002502 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.976561 B =11189.674082 C =11870.573248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.208 4.208 3 C -0.214 4.214 4 C 0.001 3.999 5 C 0.147 3.853 6 H 0.103 0.897 7 C 0.069 3.931 8 O -0.583 6.583 9 N -0.678 5.678 10 C 0.526 3.474 11 O -0.540 6.540 12 C 0.484 3.516 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.057 4.057 16 C -0.049 4.049 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.020 2.980 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.243 1.243 27 C -0.074 4.074 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.399 0.601 36 H 0.415 0.585 37 H 0.423 0.577 38 H 0.174 0.826 39 H 0.278 0.722 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -18.753 -10.945 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.208 4.208 3 C -0.214 4.214 4 C -0.036 4.036 5 C 0.043 3.957 6 H 0.121 0.879 7 C -0.010 4.010 8 O -0.391 6.391 9 N -0.330 5.330 10 C 0.306 3.694 11 O -0.418 6.418 12 C 0.266 3.734 13 O -0.422 6.422 14 N -0.226 5.226 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.249 0.751 36 H 0.252 0.748 37 H 0.261 0.739 38 H 0.190 0.810 39 H 0.088 0.912 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.176 -18.055 -9.578 20.861 hybrid contribution 0.500 0.210 -0.482 0.725 sum 4.676 -17.845 -10.060 21.012 Atomic orbital electron populations 1.19042 0.83268 1.04097 1.03794 1.23288 0.95298 1.00775 1.01441 1.22819 0.94543 1.02174 1.01910 1.18929 0.83178 0.97153 1.04313 1.21427 0.94482 0.84151 0.95618 0.87914 1.22552 0.91430 1.00931 0.86054 1.86421 1.27437 1.94873 1.30404 1.45762 1.66639 1.06352 1.14219 1.19636 0.78300 0.84388 0.87042 1.90720 1.50690 1.84810 1.15568 1.20314 0.80712 0.84426 0.87959 1.90650 1.50530 1.84396 1.16640 1.42070 1.63306 1.04876 1.12394 1.17302 1.20069 0.87469 0.91477 1.24223 1.07048 0.96855 0.94312 1.78154 1.27124 0.99334 1.09354 1.44853 1.37252 1.07113 1.03866 1.20672 1.46087 0.79811 1.01897 0.84051 1.26900 0.94921 1.06240 0.93638 1.70378 1.34679 1.39013 1.00730 0.84560 0.78951 0.73520 0.79073 1.19141 1.20051 1.16584 1.22002 1.15203 0.90417 0.94847 0.88288 0.89579 0.89902 0.85019 0.87841 0.88765 0.93986 0.75084 0.74785 0.73897 0.80962 0.91215 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.32 70.18 0.72 -0.02 16 2 C -0.21 -4.68 14.13 31.13 0.44 -4.24 16 3 C -0.21 -4.63 13.06 31.13 0.41 -4.22 16 4 C 0.00 0.01 4.97 28.79 0.14 0.15 16 5 C 0.15 2.65 2.34 44.99 0.11 2.76 16 6 H 0.10 1.98 7.58 -2.39 -0.02 1.96 16 7 C 0.07 0.95 6.85 71.98 0.49 1.44 16 8 O -0.58 -8.09 12.83 -148.98 -1.91 -10.00 16 9 N -0.68 -16.82 4.72 -444.02 -2.09 -18.91 16 10 C 0.53 16.04 7.85 87.22 0.68 16.73 16 11 O -0.54 -17.03 16.14 -3.31 -0.05 -17.09 16 12 C 0.48 18.05 7.85 87.23 0.69 18.73 16 13 O -0.54 -23.23 13.62 -3.41 -0.05 -23.28 16 14 N -0.58 -22.09 5.45 -305.34 -1.66 -23.75 16 15 C -0.06 -2.67 6.90 37.82 0.26 -2.41 16 16 C -0.05 -2.66 10.84 85.44 0.93 -1.74 16 17 N -0.31 -18.50 10.41 -56.43 -0.59 -19.09 16 18 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16 19 C -0.35 -18.63 10.24 84.02 0.86 -17.77 16 20 H 0.14 6.46 7.84 -2.91 -0.02 6.43 16 21 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 22 N -0.82 -46.93 11.83 21.66 0.26 -46.67 16 23 Si 1.02 38.24 29.56 68.60 2.03 40.27 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.24 -8.21 7.11 99.48 0.71 -7.51 16 27 C -0.07 -3.47 11.50 83.41 0.96 -2.51 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.60 7.73 -2.39 -0.02 1.58 16 33 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.40 2.29 9.12 -74.06 -0.68 1.61 16 36 H 0.42 10.65 8.07 -92.71 -0.75 9.90 16 37 H 0.42 13.46 8.29 -92.71 -0.77 12.69 16 38 H 0.17 9.28 5.92 -2.91 -0.02 9.26 16 39 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.19 7.04 8.06 -2.91 -0.02 7.01 16 Total: -1.00 -78.03 361.70 1.32 -76.72 By element: Atomic # 1 Polarization: 45.49 SS G_CDS: -1.06 Total: 44.43 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 7.16 Total: 7.13 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.80 Total: -118.18 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -2.01 Total: -50.37 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -78.03 1.32 -76.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.789 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds