Wall clock time and date at job start Fri Apr 10 2020 18:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99577 * 2 1 4 4 C 1.50699 * 109.47533 * 275.86647 * 3 2 1 5 5 H 1.08005 * 119.99797 * 5.06729 * 4 3 2 6 6 C 1.37877 * 120.00320 * 185.06272 * 4 3 2 7 7 N 1.31512 * 119.99875 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 120.00126 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47455 * 89.99579 * 8 6 4 10 10 H 1.48498 * 109.47256 * 210.00190 * 8 6 4 11 11 H 1.48507 * 109.46942 * 329.99662 * 8 6 4 12 12 S 1.65598 * 120.00057 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.39855 * 161.07805 * 12 2 1 14 14 O 1.42094 * 106.40395 * 28.15817 * 12 2 1 15 15 N 1.65596 * 107.21806 * 274.61337 * 12 2 1 16 16 C 1.46506 * 119.99734 * 63.83415 * 15 12 2 17 17 C 1.53002 * 109.47120 * 165.49714 * 16 15 12 18 18 H 1.09001 * 110.88467 * 51.11326 * 17 16 15 19 19 C 1.55152 * 111.00394 * 175.00088 * 17 16 15 20 20 C 1.54323 * 102.94440 * 153.57494 * 19 17 16 21 21 N 1.47023 * 107.26871 * 337.80718 * 20 19 17 22 22 C 1.34780 * 125.64877 * 178.98805 * 21 20 19 23 23 N 1.34772 * 119.99740 * 359.97090 * 22 21 20 24 24 O 1.21581 * 120.00062 * 179.97438 * 22 21 20 25 25 C 1.47429 * 108.70361 * 358.93728 * 21 20 19 26 26 H 1.09000 * 109.46796 * 269.99398 * 1 2 3 27 27 H 1.08997 * 109.47051 * 30.00023 * 1 2 3 28 28 H 1.09000 * 109.46579 * 149.99922 * 1 2 3 29 29 H 1.09001 * 109.47337 * 35.86978 * 3 2 1 30 30 H 1.09003 * 109.46889 * 155.86564 * 3 2 1 31 31 H 0.97004 * 120.00174 * 179.97438 * 7 6 4 32 32 H 0.97002 * 120.00191 * 244.10418 * 15 12 2 33 33 H 1.08999 * 109.46508 * 285.49377 * 16 15 12 34 34 H 1.08997 * 109.46962 * 45.49171 * 16 15 12 35 35 H 1.09004 * 110.71716 * 271.93869 * 19 17 16 36 36 H 1.08998 * 110.72193 * 35.20901 * 19 17 16 37 37 H 1.08996 * 109.88154 * 97.21906 * 20 19 17 38 38 H 1.09003 * 109.88316 * 218.23586 * 20 19 17 39 39 H 0.97003 * 120.00236 * 0.02562 * 23 22 21 40 40 H 0.97005 * 120.00252 * 179.97438 * 23 22 21 41 41 H 1.08996 * 110.37049 * 265.29299 * 25 21 20 42 42 H 1.09003 * 110.36536 * 142.96778 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3229 1.7765 -1.4133 5 1 1.8300 1.2546 -2.2203 6 6 3.0667 2.9072 -1.6762 7 7 3.1765 3.3500 -2.9097 8 14 3.9197 3.8095 -0.2807 9 1 5.2851 3.2562 -0.0949 10 1 4.0116 5.2549 -0.6088 11 1 3.1402 3.6348 0.9712 12 16 2.2931 -1.4341 0.0006 13 8 3.6105 -1.1369 -0.4416 14 8 1.4530 -2.3828 -0.6422 15 7 2.4280 -1.9215 1.5775 16 6 1.2259 -2.2485 2.3485 17 6 1.6243 -3.0008 3.6198 18 1 2.4025 -2.4632 4.1617 19 6 0.3904 -3.2553 4.5252 20 6 0.7944 -4.5194 5.3129 21 7 1.8333 -5.2068 4.5320 22 6 2.4617 -6.3441 4.8902 23 7 2.1516 -6.9471 6.0549 24 8 3.3082 -6.8259 4.1626 25 6 2.0729 -4.4468 3.2917 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3632 -0.8900 -0.5139 29 1 1.6579 1.9998 0.6022 30 1 3.1913 1.1145 0.4202 31 1 3.6995 4.1457 -3.0947 32 1 3.3026 -1.9868 1.9918 33 1 0.7061 -1.3291 2.6182 34 1 0.5675 -2.8750 1.7467 35 1 0.2280 -2.4154 5.2007 36 1 -0.4979 -3.4441 3.9224 37 1 1.1900 -4.2374 6.2887 38 1 -0.0706 -5.1707 5.4378 39 1 1.4760 -6.5628 6.6353 40 1 2.6036 -7.7658 6.3126 41 1 1.4751 -4.8535 2.4760 42 1 3.1317 -4.4661 3.0335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364001249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:34 Heat of formation + Delta-G solvation = -135.789090 kcal Electronic energy + Delta-G solvation = -25640.571018 eV Core-core repulsion = 21781.096165 eV Total energy + Delta-G solvation = -3859.474853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23364 -38.99872 -38.27812 -37.26569 -36.84816 -36.16414 -34.64009 -34.48521 -32.17533 -30.24472 -29.99450 -26.82550 -26.52996 -24.01076 -23.81049 -21.71871 -21.05174 -20.31142 -19.25278 -19.11966 -18.66512 -18.18705 -17.97142 -17.47664 -16.98486 -16.41502 -16.05087 -15.94031 -15.81820 -15.20665 -14.82324 -14.55223 -14.48372 -14.28175 -14.03232 -13.92592 -13.81034 -13.40026 -13.32765 -13.15967 -13.08145 -12.97599 -12.94811 -12.32469 -12.23221 -12.11762 -12.03842 -11.89492 -11.68875 -11.59738 -11.50289 -10.76958 -10.74832 -10.45214 -9.73568 -9.60680 -8.28067 -6.34006 -0.34438 1.37932 1.43394 1.50938 1.75667 2.07357 2.09602 2.37292 2.66001 3.06871 3.29232 3.44565 3.59477 3.63908 3.85667 4.05324 4.29486 4.32149 4.39417 4.56439 4.64207 4.69415 4.75747 4.79094 4.83369 4.91953 4.94873 5.02224 5.10768 5.17809 5.26325 5.36665 5.40508 5.50576 5.76169 5.96194 5.97679 6.13345 6.32583 6.69704 6.92867 7.29558 7.59023 8.89533 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.002973 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.927984 B = 9416.167104 C = 9478.105517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.998 5.998 3 C 0.235 3.765 4 C -0.546 4.546 5 H 0.027 0.973 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.223 1.223 12 S 2.796 3.204 13 O -1.016 7.016 14 O -1.012 7.012 15 N -1.119 6.119 16 C 0.120 3.880 17 C -0.096 4.096 18 H 0.104 0.896 19 C -0.115 4.115 20 C 0.093 3.907 21 N -0.637 5.637 22 C 0.710 3.290 23 N -0.843 5.843 24 O -0.652 6.652 25 C 0.117 3.883 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.060 0.940 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 -13.368 27.258 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.839 5.839 3 C 0.110 3.890 4 C -0.585 4.585 5 H 0.045 0.955 6 C -0.194 4.194 7 N -0.590 5.590 8 Si 0.767 3.233 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.145 1.145 12 S 2.804 3.196 13 O -0.999 6.999 14 O -0.995 6.995 15 N -0.883 5.883 16 C -0.005 4.005 17 C -0.117 4.117 18 H 0.123 0.877 19 C -0.154 4.154 20 C -0.028 4.028 21 N -0.376 5.376 22 C 0.410 3.590 23 N -0.413 5.413 24 O -0.535 6.535 25 C -0.007 4.007 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.258 0.742 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.749 -13.947 25.768 30.880 hybrid contribution 0.932 0.354 0.125 1.005 sum -8.817 -13.594 25.893 30.545 Atomic orbital electron populations 1.21694 0.77650 1.03466 1.03294 1.57281 1.15925 1.21214 1.89482 1.19214 0.92141 0.82414 0.95249 1.21766 1.31561 1.10972 0.94240 0.95453 1.25989 0.96578 0.98136 0.98661 1.70080 1.42241 1.24925 1.21790 0.85761 0.79626 0.77447 0.80461 1.19881 1.20550 1.14525 1.01232 0.71919 0.72622 0.73820 1.93570 1.40498 1.85140 1.80738 1.93505 1.69839 1.61727 1.74477 1.55784 1.15934 1.84199 1.32389 1.21558 0.85780 1.00996 0.92200 1.22527 1.00371 0.93028 0.95786 0.87733 1.22717 0.96736 0.97583 0.98341 1.22337 0.90429 0.94405 0.95658 1.47605 1.42068 1.24432 1.23461 1.15797 0.80675 0.80058 0.82458 1.42743 1.46739 1.30962 1.20819 1.90952 1.38889 1.67796 1.55847 1.22233 1.01010 0.91193 0.86241 0.88978 0.91515 0.91225 0.92169 0.94673 0.92402 0.74168 0.88188 0.90313 0.86531 0.88859 0.89368 0.89482 0.75516 0.74657 0.92131 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.70 127.77 1.37 3.79 16 2 N -1.00 -37.24 3.23 -543.22 -1.75 -38.99 16 3 C 0.23 10.41 4.18 85.63 0.36 10.77 16 4 C -0.55 -31.56 9.93 25.60 0.25 -31.31 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 6 C 0.00 0.23 5.47 84.65 0.46 0.69 16 7 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 8 Si 0.95 42.55 27.37 68.60 1.88 44.43 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.22 -8.46 6.69 99.48 0.67 -7.79 16 12 S 2.80 104.10 6.10 -56.49 -0.34 103.76 16 13 O -1.02 -48.28 16.94 -128.00 -2.17 -50.45 16 14 O -1.01 -41.08 16.35 -128.00 -2.09 -43.18 16 15 N -1.12 -26.64 6.00 -187.48 -1.12 -27.76 16 16 C 0.12 1.88 5.71 86.38 0.49 2.37 16 17 C -0.10 -1.12 3.07 -9.40 -0.03 -1.14 16 18 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 19 C -0.12 -0.54 6.42 31.78 0.20 -0.33 16 20 C 0.09 0.54 6.15 86.73 0.53 1.08 16 21 N -0.64 -10.29 3.33 -829.75 -2.76 -13.05 16 22 C 0.71 15.06 8.76 179.06 1.57 16.63 16 23 N -0.84 -8.72 8.83 -184.76 -1.63 -10.35 16 24 O -0.65 -21.55 17.44 -3.97 -0.07 -21.62 16 25 C 0.12 2.22 6.32 86.85 0.55 2.77 16 26 H 0.09 1.70 7.89 -2.39 -0.02 1.68 16 27 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 28 H 0.07 1.99 7.06 -2.39 -0.02 1.97 16 29 H 0.06 2.36 7.52 -2.39 -0.02 2.34 16 30 H 0.04 1.55 6.60 -2.39 -0.02 1.54 16 31 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.42 8.85 8.65 -96.74 -0.84 8.01 16 33 H 0.10 1.08 7.89 -2.39 -0.02 1.06 16 34 H 0.08 1.31 7.61 -2.39 -0.02 1.30 16 35 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.09 0.34 8.04 -2.39 -0.02 0.32 16 37 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.41 1.25 7.82 -92.71 -0.72 0.53 16 40 H 0.42 3.63 8.93 -92.70 -0.83 2.80 16 41 H 0.06 1.28 7.91 -2.39 -0.02 1.26 16 42 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -93.30 358.10 -5.37 -98.67 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -1.36 Total: 13.40 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.76 Total: 5.31 kcal Atomic # 7 Polarization: -143.35 SS G_CDS: -6.97 Total: -150.32 kcal Atomic # 8 Polarization: -110.92 SS G_CDS: -4.33 Total: -115.25 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.43 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.34 Total: 103.76 kcal Total: -93.30 -5.37 -98.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364001249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.120 kcal (2) G-P(sol) polarization free energy of solvation -93.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds