Wall clock time and date at job start Fri Apr 10 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00189 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00116 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.65605 * 119.99847 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40230 * 23.54106 * 12 2 1 14 14 O 1.42103 * 106.39983 * 156.45849 * 12 2 1 15 15 N 1.65601 * 107.21978 * 270.00091 * 12 2 1 16 16 C 1.46496 * 119.99945 * 64.99669 * 15 12 2 17 17 C 1.53005 * 109.47092 * 165.00080 * 16 15 12 18 18 H 1.09000 * 110.88365 * 302.57605 * 17 16 15 19 19 C 1.55159 * 111.00506 * 178.65058 * 17 16 15 20 20 C 1.54317 * 102.94219 * 206.42600 * 19 17 16 21 21 N 1.47016 * 107.27384 * 22.19301 * 20 19 17 22 22 C 1.34781 * 125.65182 * 181.02686 * 21 20 19 23 23 N 1.34773 * 120.00011 * 0.03770 * 22 21 20 24 24 O 1.21589 * 120.00081 * 180.02562 * 22 21 20 25 25 C 1.47432 * 108.70482 * 1.05865 * 21 20 19 26 26 H 1.08996 * 109.47315 * 90.00057 * 1 2 3 27 27 H 1.09001 * 109.47413 * 210.00240 * 1 2 3 28 28 H 1.09004 * 109.47332 * 330.00080 * 1 2 3 29 29 H 1.09007 * 109.47078 * 154.99755 * 3 2 1 30 30 H 1.09003 * 109.46733 * 35.00478 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99667 * 245.00267 * 15 12 2 33 33 H 1.08996 * 109.47314 * 285.00217 * 16 15 12 34 34 H 1.09005 * 109.46796 * 45.00592 * 16 15 12 35 35 H 1.08993 * 110.72018 * 324.79005 * 19 17 16 36 36 H 1.08999 * 110.71535 * 88.06299 * 19 17 16 37 37 H 1.09004 * 109.88139 * 262.77585 * 20 19 17 38 38 H 1.08996 * 109.88373 * 141.61101 * 20 19 17 39 39 H 0.97004 * 119.99588 * 0.02562 * 23 22 21 40 40 H 0.96993 * 120.00157 * 180.02562 * 23 22 21 41 41 H 1.08990 * 110.37056 * 217.03358 * 25 21 20 42 42 H 1.08994 * 110.45518 * 94.75302 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5035 3.6468 -0.6705 8 14 3.1797 3.5659 -3.4209 9 1 3.9221 4.8521 -3.4209 10 1 3.9252 2.5635 -4.2236 11 1 1.8335 3.7721 -4.0129 12 16 2.2929 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8595 1.5810 16 6 1.3945 -2.1790 2.4392 17 6 1.8874 -2.8867 3.7030 18 1 2.4463 -3.7879 3.4508 19 6 0.7061 -3.2119 4.6549 20 6 1.3808 -3.2507 6.0422 21 7 2.6235 -2.4713 5.9453 22 6 3.5108 -2.2803 6.9417 23 7 3.2918 -2.8284 8.1533 24 8 4.5090 -1.6138 6.7474 25 6 2.7381 -1.9323 4.5778 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5895 31 1 3.9676 4.4801 -0.8472 32 1 3.4387 -1.8970 1.9391 33 1 0.8793 -1.2590 2.7154 34 1 0.7079 -2.8326 1.9011 35 1 -0.0487 -2.4267 4.6150 36 1 0.2698 -4.1805 4.4110 37 1 1.6097 -4.2811 6.3144 38 1 0.7215 -2.8060 6.7876 39 1 2.4957 -3.3606 8.3080 40 1 3.9302 -2.6907 8.8704 41 1 3.7779 -1.9441 4.2513 42 1 2.3386 -0.9193 4.5329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364001255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:38 Heat of formation + Delta-G solvation = -104.233921 kcal Electronic energy + Delta-G solvation = -25697.976128 eV Core-core repulsion = 21839.869610 eV Total energy + Delta-G solvation = -3858.106518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46526 -38.18821 -36.60072 -35.50410 -35.15818 -35.14399 -33.81826 -32.41140 -31.43528 -29.30617 -27.77595 -25.79139 -25.03999 -23.34407 -22.29253 -20.97805 -20.30726 -18.96595 -18.42463 -17.35638 -17.25157 -16.75659 -16.55980 -16.14652 -15.74383 -15.15558 -15.13827 -14.80876 -14.30565 -14.23253 -13.60919 -13.33105 -13.25054 -13.13862 -12.85369 -12.56023 -12.41001 -12.19251 -12.08189 -11.62074 -11.45473 -11.28404 -11.18559 -11.12431 -11.05994 -11.00960 -10.69735 -10.49824 -10.47765 -10.00298 -9.96906 -9.77257 -9.36587 -8.89303 -8.41296 -8.06483 -6.03434 -4.07484 1.22520 2.46920 2.96748 3.35990 3.39655 3.43686 3.48910 3.88335 4.08917 4.17923 4.30199 4.43235 4.47501 4.76133 4.95741 4.97868 5.05042 5.17657 5.30490 5.36768 5.41755 5.50426 5.52155 5.61296 5.62576 5.84432 5.93069 6.02137 6.03928 6.30361 6.52681 6.54043 6.64873 7.07119 7.26686 7.42694 7.60621 7.62091 7.93583 8.23059 8.36630 8.94383 9.57556 11.05108 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003263 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.863095 B = 8578.426019 C = 9441.029484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.277 1.277 12 S 2.783 3.217 13 O -0.998 6.998 14 O -0.962 6.962 15 N -1.136 6.136 16 C 0.132 3.868 17 C -0.109 4.109 18 H 0.095 0.905 19 C -0.124 4.124 20 C 0.100 3.900 21 N -0.636 5.636 22 C 0.721 3.279 23 N -0.867 5.867 24 O -0.588 6.588 25 C 0.125 3.875 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.413 0.587 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.395 0.605 40 H 0.414 0.586 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 -15.618 17.261 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.840 5.840 3 C 0.136 3.864 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.202 1.202 12 S 2.790 3.210 13 O -0.982 6.982 14 O -0.946 6.946 15 N -0.895 5.895 16 C 0.005 3.995 17 C -0.129 4.129 18 H 0.113 0.887 19 C -0.163 4.163 20 C -0.023 4.023 21 N -0.376 5.376 22 C 0.421 3.579 23 N -0.435 5.435 24 O -0.465 6.465 25 C 0.002 3.998 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.223 0.777 40 H 0.246 0.754 41 H 0.101 0.899 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.866 -15.428 16.235 23.738 hybrid contribution 0.212 0.441 0.043 0.491 sum -7.654 -14.987 16.278 23.413 Atomic orbital electron populations 1.21227 0.80165 1.00973 1.01562 1.57628 1.14193 1.23433 1.88734 1.19066 0.91065 0.78601 0.97650 1.21450 1.36180 1.06354 0.92959 0.92259 1.24935 0.95108 0.96525 0.97464 1.69910 1.37210 1.15361 1.30970 0.86575 0.78261 0.77997 0.84721 1.21183 1.19991 1.20212 1.01936 0.73376 0.72858 0.72836 1.93529 1.67653 1.60265 1.76706 1.93652 1.40635 1.84779 1.75535 1.56291 1.14505 1.86286 1.32417 1.21138 0.88372 0.99545 0.90447 1.22609 0.96915 0.99383 0.94026 0.88701 1.22651 0.97422 1.03609 0.92606 1.22012 0.85818 0.95726 0.98784 1.47547 1.22824 1.55462 1.11762 1.15469 0.82232 0.79996 0.80158 1.42977 1.29417 1.58726 1.12377 1.91014 1.28778 1.44815 1.81943 1.22220 1.01583 0.97075 0.78931 0.93122 0.93106 0.91473 0.94377 0.94721 0.92628 0.75359 0.91361 0.89945 0.89676 0.89335 0.91575 0.91444 0.77696 0.75359 0.89932 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.75 10.33 59.84 0.62 2.37 16 2 N -1.00 -20.06 3.23 -123.06 -0.40 -20.46 16 3 C 0.26 6.42 5.12 -5.20 -0.03 6.39 16 4 C -0.53 -14.98 9.38 -34.44 -0.32 -15.30 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 S 2.78 53.26 6.05 -107.50 -0.65 52.60 16 13 O -1.00 -19.97 16.68 -57.17 -0.95 -20.93 16 14 O -0.96 -22.86 17.11 -57.17 -0.98 -23.83 16 15 N -1.14 -15.57 5.97 -10.61 -0.06 -15.64 16 16 C 0.13 1.35 5.70 -4.04 -0.02 1.33 16 17 C -0.11 -0.88 3.17 -88.47 -0.28 -1.16 16 18 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.12 -0.66 6.42 -24.90 -0.16 -0.82 16 20 C 0.10 0.55 6.15 -3.07 -0.02 0.53 16 21 N -0.64 -6.07 3.33 -176.25 -0.59 -6.66 16 22 C 0.72 8.39 8.76 -86.92 -0.76 7.63 16 23 N -0.87 -5.83 8.83 27.63 0.24 -5.58 16 24 O -0.59 -9.88 17.44 5.29 0.09 -9.79 16 25 C 0.12 1.30 5.93 -2.52 -0.01 1.29 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 28 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 29 H 0.04 1.01 7.61 -51.92 -0.40 0.62 16 30 H 0.03 0.87 7.96 -51.93 -0.41 0.46 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.41 5.22 8.17 -34.47 -0.28 4.93 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.81 7.75 -51.93 -0.40 0.40 16 35 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.40 1.44 7.82 -40.82 -0.32 1.12 16 40 H 0.41 2.35 8.93 -40.82 -0.36 1.98 16 41 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 42 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -38.78 362.02 -9.52 -48.30 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.31 Total: 1.20 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.09 Total: 3.93 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.07 Total: -73.98 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -1.84 Total: -54.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.65 Total: 52.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.78 -9.52 -48.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364001255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.934 kcal (2) G-P(sol) polarization free energy of solvation -38.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds