Wall clock time and date at job start Fri Apr 10 2020 18:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00189 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00116 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.65605 * 119.99847 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40230 * 23.54106 * 12 2 1 14 14 O 1.42103 * 106.39983 * 156.45849 * 12 2 1 15 15 N 1.65601 * 107.21978 * 270.00091 * 12 2 1 16 16 C 1.46496 * 119.99945 * 64.99669 * 15 12 2 17 17 C 1.53005 * 109.47092 * 165.00080 * 16 15 12 18 18 H 1.09000 * 110.88365 * 302.57605 * 17 16 15 19 19 C 1.55159 * 111.00506 * 178.65058 * 17 16 15 20 20 C 1.54317 * 102.94219 * 206.42600 * 19 17 16 21 21 N 1.47016 * 107.27384 * 22.19301 * 20 19 17 22 22 C 1.34781 * 125.65182 * 181.02686 * 21 20 19 23 23 N 1.34773 * 120.00011 * 0.03770 * 22 21 20 24 24 O 1.21589 * 120.00081 * 180.02562 * 22 21 20 25 25 C 1.47432 * 108.70482 * 1.05865 * 21 20 19 26 26 H 1.08996 * 109.47315 * 90.00057 * 1 2 3 27 27 H 1.09001 * 109.47413 * 210.00240 * 1 2 3 28 28 H 1.09004 * 109.47332 * 330.00080 * 1 2 3 29 29 H 1.09007 * 109.47078 * 154.99755 * 3 2 1 30 30 H 1.09003 * 109.46733 * 35.00478 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99667 * 245.00267 * 15 12 2 33 33 H 1.08996 * 109.47314 * 285.00217 * 16 15 12 34 34 H 1.09005 * 109.46796 * 45.00592 * 16 15 12 35 35 H 1.08993 * 110.72018 * 324.79005 * 19 17 16 36 36 H 1.08999 * 110.71535 * 88.06299 * 19 17 16 37 37 H 1.09004 * 109.88139 * 262.77585 * 20 19 17 38 38 H 1.08996 * 109.88373 * 141.61101 * 20 19 17 39 39 H 0.97004 * 119.99588 * 0.02562 * 23 22 21 40 40 H 0.96993 * 120.00157 * 180.02562 * 23 22 21 41 41 H 1.08990 * 110.37056 * 217.03358 * 25 21 20 42 42 H 1.08994 * 110.45518 * 94.75302 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5035 3.6468 -0.6705 8 14 3.1797 3.5659 -3.4209 9 1 3.9221 4.8521 -3.4209 10 1 3.9252 2.5635 -4.2236 11 1 1.8335 3.7721 -4.0129 12 16 2.2929 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8595 1.5810 16 6 1.3945 -2.1790 2.4392 17 6 1.8874 -2.8867 3.7030 18 1 2.4463 -3.7879 3.4508 19 6 0.7061 -3.2119 4.6549 20 6 1.3808 -3.2507 6.0422 21 7 2.6235 -2.4713 5.9453 22 6 3.5108 -2.2803 6.9417 23 7 3.2918 -2.8284 8.1533 24 8 4.5090 -1.6138 6.7474 25 6 2.7381 -1.9323 4.5778 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5895 31 1 3.9676 4.4801 -0.8472 32 1 3.4387 -1.8970 1.9391 33 1 0.8793 -1.2590 2.7154 34 1 0.7079 -2.8326 1.9011 35 1 -0.0487 -2.4267 4.6150 36 1 0.2698 -4.1805 4.4110 37 1 1.6097 -4.2811 6.3144 38 1 0.7215 -2.8060 6.7876 39 1 2.4957 -3.3606 8.3080 40 1 3.9302 -2.6907 8.8704 41 1 3.7779 -1.9441 4.2513 42 1 2.3386 -0.9193 4.5329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364001255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:37 Heat of formation + Delta-G solvation = -138.274572 kcal Electronic energy + Delta-G solvation = -25699.452242 eV Core-core repulsion = 21839.869610 eV Total energy + Delta-G solvation = -3859.582632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23335 -39.00622 -38.23270 -37.19381 -36.82032 -36.15480 -34.62587 -34.49228 -32.17914 -29.96965 -29.65766 -26.83514 -26.56597 -24.21112 -23.99808 -21.66666 -21.06665 -20.29027 -19.26074 -18.88052 -18.34091 -18.18002 -18.05632 -17.44951 -16.94601 -16.54016 -16.07175 -15.93757 -15.64571 -15.15487 -14.92223 -14.86054 -14.22310 -14.05548 -13.94192 -13.90912 -13.67834 -13.37737 -13.29159 -13.11469 -13.05371 -13.02122 -12.92852 -12.47150 -12.36765 -12.04334 -12.01827 -11.85222 -11.76390 -11.63791 -11.49337 -10.74092 -10.59748 -10.46048 -9.77979 -9.60068 -8.19861 -6.31816 -0.28992 1.38888 1.42759 1.49780 1.75888 2.07993 2.10646 2.40881 2.68230 3.10969 3.29597 3.46954 3.59369 3.62768 3.87678 4.06210 4.22165 4.32967 4.38428 4.59987 4.63307 4.72134 4.77960 4.79753 4.87861 4.93912 5.01793 5.10285 5.15464 5.21590 5.25854 5.38001 5.46651 5.70616 5.86877 5.96904 5.98257 6.09110 6.15037 6.76574 6.93674 7.36988 7.60040 8.87319 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003263 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.863095 B = 8578.426019 C = 9441.029484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.003 6.003 3 C 0.273 3.727 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.262 1.262 12 S 2.800 3.200 13 O -1.005 7.005 14 O -1.016 7.016 15 N -1.123 6.123 16 C 0.121 3.879 17 C -0.098 4.098 18 H 0.099 0.901 19 C -0.115 4.115 20 C 0.094 3.906 21 N -0.637 5.637 22 C 0.710 3.290 23 N -0.843 5.843 24 O -0.652 6.652 25 C 0.118 3.882 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.014 0.986 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.419 0.581 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.055 0.945 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -17.196 18.159 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.845 5.845 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.187 1.187 12 S 2.807 3.193 13 O -0.988 6.988 14 O -1.000 7.000 15 N -0.886 5.886 16 C -0.004 4.004 17 C -0.118 4.118 18 H 0.117 0.883 19 C -0.154 4.154 20 C -0.027 4.027 21 N -0.375 5.375 22 C 0.410 3.590 23 N -0.412 5.412 24 O -0.534 6.534 25 C -0.006 4.006 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.253 0.747 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.341 -17.060 17.156 26.312 hybrid contribution 0.894 0.844 -0.135 1.237 sum -9.448 -16.216 17.021 25.336 Atomic orbital electron populations 1.21513 0.77844 1.03562 1.01903 1.57501 1.15789 1.21884 1.89301 1.18600 0.90430 0.80348 0.95732 1.21833 1.36190 1.06610 0.94348 0.92995 1.25762 0.94831 0.96841 1.01453 1.70007 1.37826 1.15768 1.32848 0.85647 0.78848 0.77523 0.79945 1.20203 1.20342 1.18677 1.01180 0.71991 0.72437 0.73651 1.93511 1.67575 1.60049 1.77698 1.93575 1.43246 1.85449 1.77718 1.55857 1.16084 1.85600 1.31085 1.21525 0.87303 1.00801 0.90811 1.22506 0.97939 0.98379 0.93023 0.88285 1.22717 0.96194 1.05391 0.91077 1.22332 0.84238 0.96477 0.99667 1.47583 1.23754 1.55366 1.10828 1.15800 0.81847 0.79889 0.81463 1.42731 1.30067 1.57637 1.10807 1.90965 1.31542 1.47698 1.83213 1.22189 1.00534 0.97517 0.80345 0.93950 0.89199 0.90262 0.96837 0.95196 0.92415 0.74650 0.90198 0.88505 0.88684 0.86734 0.89380 0.89381 0.75516 0.74658 0.92622 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.02 10.33 127.77 1.32 4.34 16 2 N -1.00 -40.25 3.23 -543.24 -1.75 -42.00 16 3 C 0.27 13.88 5.12 85.63 0.44 14.32 16 4 C -0.55 -31.63 9.38 25.60 0.24 -31.39 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.61 5.46 84.66 0.46 1.07 16 7 N -0.92 -55.32 13.29 21.45 0.28 -55.04 16 8 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 S 2.80 107.04 6.05 -56.49 -0.34 106.70 16 13 O -1.01 -38.98 16.68 -128.00 -2.14 -41.11 16 14 O -1.02 -49.77 17.11 -128.00 -2.19 -51.96 16 15 N -1.12 -30.19 5.97 -187.49 -1.12 -31.31 16 16 C 0.12 2.20 5.70 86.38 0.49 2.69 16 17 C -0.10 -1.36 3.17 -9.40 -0.03 -1.39 16 18 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 19 C -0.12 -0.76 6.42 31.78 0.20 -0.55 16 20 C 0.09 0.69 6.15 86.73 0.53 1.23 16 21 N -0.64 -11.32 3.33 -829.78 -2.76 -14.08 16 22 C 0.71 16.24 8.76 179.05 1.57 17.80 16 23 N -0.84 -9.95 8.83 -184.75 -1.63 -11.58 16 24 O -0.65 -22.80 17.44 -4.00 -0.07 -22.87 16 25 C 0.12 2.43 5.93 86.85 0.52 2.94 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.06 7.79 -2.39 -0.02 2.04 16 28 H 0.08 2.26 7.94 -2.38 -0.02 2.24 16 29 H 0.01 0.75 7.61 -2.38 -0.02 0.74 16 30 H 0.03 1.54 7.96 -2.39 -0.02 1.52 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.42 10.76 8.17 -96.75 -0.79 9.97 16 33 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.10 1.55 7.75 -2.38 -0.02 1.53 16 35 H 0.09 0.49 8.04 -2.39 -0.02 0.47 16 36 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.41 1.79 7.82 -92.71 -0.72 1.07 16 40 H 0.42 4.24 8.93 -92.71 -0.83 3.41 16 41 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 42 H 0.06 1.44 8.00 -2.39 -0.02 1.42 16 Total: -1.00 -87.19 362.02 -5.23 -92.41 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -1.28 Total: 12.37 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.74 Total: 11.06 kcal Atomic # 7 Polarization: -147.02 SS G_CDS: -6.98 Total: -154.00 kcal Atomic # 8 Polarization: -111.55 SS G_CDS: -4.39 Total: -115.95 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 107.04 SS G_CDS: -0.34 Total: 106.70 kcal Total: -87.19 -5.23 -92.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364001255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.860 kcal (2) G-P(sol) polarization free energy of solvation -87.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds