Wall clock time and date at job start Fri Apr 10 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40025 * 126.25657 * 2 1 4 4 N 1.23652 * 109.31274 * 179.71749 * 3 2 1 5 5 N 1.40023 * 109.31949 * 0.46773 * 4 3 2 6 6 C 1.46495 * 126.26002 * 179.78862 * 5 4 3 7 7 C 1.53003 * 109.47662 * 269.68854 * 6 5 4 8 8 H 1.09001 * 109.46630 * 59.99970 * 7 6 5 9 9 O 1.42902 * 109.47210 * 300.00586 * 7 6 5 10 10 C 1.52996 * 109.47342 * 179.97438 * 7 6 5 11 11 O 1.42905 * 109.46857 * 184.99926 * 10 7 6 12 12 C 1.35672 * 116.99443 * 179.97438 * 11 10 7 13 13 C 1.39320 * 119.81318 * 180.02562 * 12 11 10 14 14 C 1.36440 * 120.18380 * 180.25944 * 13 12 11 15 15 C 1.40837 * 119.80773 * 359.45756 * 14 13 12 16 16 C 1.41218 * 120.17528 * 180.25420 * 15 14 13 17 17 H 1.08003 * 119.99900 * 204.72191 * 16 15 14 18 18 C 1.39892 * 120.00136 * 24.72013 * 16 15 14 19 19 N 1.30882 * 119.99699 * 17.77743 * 18 16 15 20 20 Si 1.86795 * 120.00105 * 197.77306 * 18 16 15 21 21 H 1.48506 * 109.47332 * 90.00214 * 20 18 16 22 22 H 1.48504 * 109.47329 * 210.00225 * 20 18 16 23 23 H 1.48506 * 109.47349 * 330.00330 * 20 18 16 24 24 C 1.40826 * 119.64447 * 0.54108 * 15 14 13 25 25 C 1.36440 * 119.81067 * 359.73281 * 24 15 14 26 26 C 1.35048 * 107.47963 * 359.53113 * 5 4 3 27 27 O 1.21819 * 126.80313 * 180.26291 * 26 5 4 28 28 H 1.09005 * 109.47318 * 269.97244 * 1 2 3 29 29 H 1.08994 * 109.47111 * 29.97408 * 1 2 3 30 30 H 1.09000 * 109.47189 * 149.97699 * 1 2 3 31 31 H 1.09001 * 109.47123 * 149.69125 * 6 5 4 32 32 H 1.08996 * 109.47478 * 29.69205 * 6 5 4 33 33 H 0.96701 * 113.99147 * 299.99842 * 9 7 6 34 34 H 1.09003 * 109.46715 * 65.00315 * 10 7 6 35 35 H 1.08998 * 109.47592 * 305.00224 * 10 7 6 36 36 H 1.07999 * 119.90506 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.09344 * 179.70738 * 14 13 12 38 38 H 0.97005 * 119.99704 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.09683 * 179.70684 * 24 15 14 40 40 H 1.08006 * 119.90524 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2931 1.1291 0.0000 4 7 3.4760 0.7688 0.0058 5 7 3.5340 -0.6302 -0.0007 6 6 4.7502 -1.4469 -0.0013 7 6 5.1732 -1.7310 -1.4440 8 1 5.3676 -0.7895 -1.9577 9 8 4.1271 -2.4339 -2.1176 10 6 6.4437 -2.5834 -1.4446 11 8 6.9041 -2.7512 -2.7870 12 6 8.0299 -3.4872 -2.9645 13 6 8.5311 -3.6878 -4.2489 14 6 9.6597 -4.4311 -4.4365 15 6 10.3247 -4.9867 -3.3263 16 6 11.4965 -5.7529 -3.5112 17 1 11.7818 -6.4895 -2.7747 18 6 12.2877 -5.5578 -4.6482 19 7 12.1595 -4.4635 -5.3546 20 14 13.5270 -6.8590 -5.1582 21 1 12.8785 -7.8261 -6.0800 22 1 14.6714 -6.2098 -5.8470 23 1 14.0165 -7.5758 -3.9532 24 6 9.8114 -4.7793 -2.0314 25 6 8.6786 -4.0381 -1.8616 26 6 2.2639 -1.0890 -0.0005 27 8 1.9088 -2.2543 -0.0007 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.5559 -2.3885 0.5123 32 1 5.5482 -0.9109 0.5123 33 1 3.9007 -3.2830 -1.7141 34 1 6.2266 -3.5593 -1.0103 35 1 7.2147 -2.0869 -0.8554 36 1 8.0222 -3.2574 -5.0987 37 1 10.0443 -4.5896 -5.4332 38 1 12.7079 -4.3283 -6.1433 39 1 10.3128 -5.2059 -1.1753 40 1 8.2833 -3.8783 -0.8692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364618608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:45 Heat of formation + Delta-G solvation = 19.129234 kcal Electronic energy + Delta-G solvation = -25702.603159 eV Core-core repulsion = 21714.402117 eV Total energy + Delta-G solvation = -3988.201042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.13026 -39.18769 -38.33977 -37.71961 -36.20664 -35.28113 -33.56862 -33.34419 -30.98212 -29.72799 -29.05741 -28.25040 -26.69777 -24.74930 -23.65717 -22.68151 -22.11703 -20.76563 -20.65314 -18.38832 -17.68370 -17.37826 -17.13467 -16.67264 -16.63186 -16.26696 -15.80227 -15.28640 -14.88199 -14.28903 -14.10604 -13.96877 -13.85802 -13.83058 -13.66706 -13.28663 -13.04423 -12.89607 -12.48920 -12.32497 -12.18021 -11.84312 -11.62342 -11.31971 -11.17290 -10.98197 -10.84337 -10.73880 -10.62832 -10.15341 -10.00668 -9.85277 -9.49010 -9.36502 -9.05486 -7.67383 -7.06645 -6.74565 -4.28188 0.74464 0.90705 2.07054 2.52931 2.75417 2.92287 3.07657 3.10822 3.19513 3.61888 3.72026 3.93733 4.19932 4.46277 4.59053 4.69056 4.76159 4.78675 4.91168 5.01170 5.04407 5.08895 5.17358 5.40722 5.48755 5.59996 5.64094 5.82911 6.01385 6.19304 6.68866 6.94891 7.08176 7.15801 7.35454 7.41831 7.43967 7.52057 7.54285 7.75371 7.98224 8.17653 8.40845 8.62189 8.87578 8.95677 10.19955 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.046534 B = 0.002028 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.566820 B =13801.442705 C =13843.130248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.476 5.476 3 N 0.018 4.982 4 N 0.025 4.975 5 N -0.461 5.461 6 C 0.122 3.878 7 C 0.092 3.908 8 H 0.115 0.885 9 O -0.544 6.544 10 C 0.042 3.958 11 O -0.315 6.315 12 C -0.011 4.011 13 C -0.117 4.117 14 C -0.134 4.134 15 C 0.088 3.912 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.199 4.199 25 C -0.167 4.167 26 C 0.650 3.350 27 O -0.525 6.525 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.378 0.622 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 8.459 10.426 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.308 5.308 3 N 0.020 4.980 4 N 0.028 4.972 5 N -0.291 5.291 6 C 0.000 4.000 7 C 0.031 3.969 8 H 0.133 0.867 9 O -0.350 6.350 10 C -0.036 4.036 11 O -0.231 6.231 12 C -0.054 4.054 13 C -0.136 4.136 14 C -0.153 4.153 15 C 0.086 3.914 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.219 4.219 25 C -0.186 4.186 26 C 0.348 3.652 27 O -0.393 6.393 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.226 0.774 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.278 9.413 9.699 21.936 hybrid contribution 0.574 -1.663 0.371 1.798 sum -16.704 7.750 10.070 20.988 Atomic orbital electron populations 1.21854 0.70868 1.05275 1.03893 1.50023 1.08462 1.03079 1.69190 1.79618 0.95310 1.11314 1.11718 1.79633 1.13108 0.93535 1.10967 1.49941 1.07846 1.02858 1.68467 1.22395 0.83319 0.95010 0.99230 1.22371 0.86399 0.97200 0.90979 0.86748 1.86647 1.54610 1.37126 1.56584 1.22960 0.95216 0.99179 0.86227 1.85886 1.41853 1.70240 1.25128 1.18595 0.89894 1.02439 0.94492 1.19842 0.98049 1.02653 0.93095 1.20989 0.93889 1.00623 0.99787 1.17608 0.92276 0.91104 0.90404 1.19475 1.06073 1.18656 1.05071 0.90512 1.25890 0.97685 0.95167 0.95526 1.69834 1.35473 1.22536 1.14545 0.86314 0.79578 0.81260 0.79552 1.19310 1.20374 1.18708 1.20557 0.99044 1.05690 0.96569 1.20383 0.99036 1.03705 0.95463 1.16854 0.81924 0.85648 0.80817 1.91139 1.77838 1.13615 1.56741 0.90443 0.88622 0.88553 0.87156 0.86482 0.77419 0.92390 0.91805 0.88440 0.85653 0.90881 0.88712 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.64 11.42 59.85 0.68 1.32 16 2 N -0.48 -4.61 4.02 -71.87 -0.29 -4.90 16 3 N 0.02 0.18 13.55 60.35 0.82 1.00 16 4 N 0.03 0.27 13.55 60.35 0.82 1.09 16 5 N -0.46 -5.00 3.53 -65.03 -0.23 -5.23 16 6 C 0.12 1.09 6.06 -4.04 -0.02 1.06 16 7 C 0.09 1.09 3.52 -26.73 -0.09 1.00 16 8 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 9 O -0.54 -7.63 12.84 -40.06 -0.51 -8.15 16 10 C 0.04 0.58 4.37 37.16 0.16 0.75 16 11 O -0.32 -6.26 10.09 -23.55 -0.24 -6.50 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 C -0.12 -2.84 9.92 -39.83 -0.40 -3.24 16 14 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 15 C 0.09 2.34 5.57 -106.80 -0.60 1.74 16 16 C -0.46 -12.18 9.04 -37.83 -0.34 -12.52 16 17 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.80 -20.57 10.96 55.54 0.61 -19.96 16 20 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.20 -4.79 9.74 -39.25 -0.38 -5.17 16 25 C -0.17 -3.65 8.96 -39.83 -0.36 -4.01 16 26 C 0.65 7.79 8.41 -86.42 -0.73 7.07 16 27 O -0.52 -7.40 17.82 5.08 0.09 -7.31 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.11 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.38 4.40 9.05 45.56 0.41 4.81 16 34 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 35 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.13 3.34 6.17 -52.49 -0.32 3.02 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 40 H 0.09 1.70 6.27 -52.48 -0.33 1.37 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -32.58 352.68 -5.38 -37.95 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.96 Total: 7.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.76 Total: -14.57 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 1.73 Total: -28.00 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.66 Total: -21.95 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.58 -5.38 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364618608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.082 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds