Wall clock time and date at job start Fri Apr 10 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40025 * 126.25657 * 2 1 4 4 N 1.23652 * 109.31274 * 179.71749 * 3 2 1 5 5 N 1.40023 * 109.31949 * 0.46773 * 4 3 2 6 6 C 1.46495 * 126.26002 * 179.78862 * 5 4 3 7 7 C 1.53003 * 109.47662 * 269.68854 * 6 5 4 8 8 H 1.09001 * 109.46630 * 59.99970 * 7 6 5 9 9 O 1.42902 * 109.47210 * 300.00586 * 7 6 5 10 10 C 1.52996 * 109.47342 * 179.97438 * 7 6 5 11 11 O 1.42905 * 109.46857 * 184.99926 * 10 7 6 12 12 C 1.35672 * 116.99443 * 179.97438 * 11 10 7 13 13 C 1.39320 * 119.81318 * 180.02562 * 12 11 10 14 14 C 1.36440 * 120.18380 * 180.25944 * 13 12 11 15 15 C 1.40837 * 119.80773 * 359.45756 * 14 13 12 16 16 C 1.41218 * 120.17528 * 180.25420 * 15 14 13 17 17 H 1.08003 * 119.99900 * 204.72191 * 16 15 14 18 18 C 1.39892 * 120.00136 * 24.72013 * 16 15 14 19 19 N 1.30882 * 119.99699 * 17.77743 * 18 16 15 20 20 Si 1.86795 * 120.00105 * 197.77306 * 18 16 15 21 21 H 1.48506 * 109.47332 * 90.00214 * 20 18 16 22 22 H 1.48504 * 109.47329 * 210.00225 * 20 18 16 23 23 H 1.48506 * 109.47349 * 330.00330 * 20 18 16 24 24 C 1.40826 * 119.64447 * 0.54108 * 15 14 13 25 25 C 1.36440 * 119.81067 * 359.73281 * 24 15 14 26 26 C 1.35048 * 107.47963 * 359.53113 * 5 4 3 27 27 O 1.21819 * 126.80313 * 180.26291 * 26 5 4 28 28 H 1.09005 * 109.47318 * 269.97244 * 1 2 3 29 29 H 1.08994 * 109.47111 * 29.97408 * 1 2 3 30 30 H 1.09000 * 109.47189 * 149.97699 * 1 2 3 31 31 H 1.09001 * 109.47123 * 149.69125 * 6 5 4 32 32 H 1.08996 * 109.47478 * 29.69205 * 6 5 4 33 33 H 0.96701 * 113.99147 * 299.99842 * 9 7 6 34 34 H 1.09003 * 109.46715 * 65.00315 * 10 7 6 35 35 H 1.08998 * 109.47592 * 305.00224 * 10 7 6 36 36 H 1.07999 * 119.90506 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.09344 * 179.70738 * 14 13 12 38 38 H 0.97005 * 119.99704 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.09683 * 179.70684 * 24 15 14 40 40 H 1.08006 * 119.90524 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2931 1.1291 0.0000 4 7 3.4760 0.7688 0.0058 5 7 3.5340 -0.6302 -0.0007 6 6 4.7502 -1.4469 -0.0013 7 6 5.1732 -1.7310 -1.4440 8 1 5.3676 -0.7895 -1.9577 9 8 4.1271 -2.4339 -2.1176 10 6 6.4437 -2.5834 -1.4446 11 8 6.9041 -2.7512 -2.7870 12 6 8.0299 -3.4872 -2.9645 13 6 8.5311 -3.6878 -4.2489 14 6 9.6597 -4.4311 -4.4365 15 6 10.3247 -4.9867 -3.3263 16 6 11.4965 -5.7529 -3.5112 17 1 11.7818 -6.4895 -2.7747 18 6 12.2877 -5.5578 -4.6482 19 7 12.1595 -4.4635 -5.3546 20 14 13.5270 -6.8590 -5.1582 21 1 12.8785 -7.8261 -6.0800 22 1 14.6714 -6.2098 -5.8470 23 1 14.0165 -7.5758 -3.9532 24 6 9.8114 -4.7793 -2.0314 25 6 8.6786 -4.0381 -1.8616 26 6 2.2639 -1.0890 -0.0005 27 8 1.9088 -2.2543 -0.0007 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.5559 -2.3885 0.5123 32 1 5.5482 -0.9109 0.5123 33 1 3.9007 -3.2830 -1.7141 34 1 6.2266 -3.5593 -1.0103 35 1 7.2147 -2.0869 -0.8554 36 1 8.0222 -3.2574 -5.0987 37 1 10.0443 -4.5896 -5.4332 38 1 12.7079 -4.3283 -6.1433 39 1 10.3128 -5.2059 -1.1753 40 1 8.2833 -3.8783 -0.8692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364618608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:45 Heat of formation + Delta-G solvation = -4.804267 kcal Electronic energy + Delta-G solvation = -25703.640993 eV Core-core repulsion = 21714.402117 eV Total energy + Delta-G solvation = -3989.238876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92868 -40.67211 -39.32781 -38.92873 -37.75740 -36.08742 -35.17774 -34.36847 -32.17346 -31.39340 -30.84665 -28.94088 -27.72201 -26.49075 -24.60010 -23.60185 -23.12881 -22.48842 -22.27739 -19.37676 -19.22475 -18.53495 -18.35642 -17.70755 -17.61803 -17.22100 -17.04523 -16.77256 -16.11841 -15.72748 -15.54609 -15.27468 -14.76535 -14.72077 -14.53718 -14.35460 -14.09922 -14.06409 -13.91928 -13.62091 -13.51266 -13.20525 -13.08069 -12.80961 -12.61280 -12.43918 -12.36565 -11.77759 -11.70895 -11.66596 -11.57510 -11.17669 -10.99094 -10.88016 -10.33442 -9.54977 -8.91828 -8.59095 -6.22232 0.01282 0.12113 0.95548 1.04039 1.19608 1.40076 1.52982 1.53154 1.79092 2.22928 2.48237 2.73292 2.92865 3.32908 3.70694 3.71068 3.73056 3.80371 3.96515 4.29279 4.31118 4.35960 4.36863 4.42948 4.45774 4.51677 4.65879 4.72472 4.85868 4.89461 4.92554 5.07825 5.22998 5.28997 5.59756 5.64983 5.88953 6.06884 6.27114 6.50512 6.56138 6.60693 6.66154 6.81845 6.95903 7.10926 8.37368 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.046534 B = 0.002028 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.566820 B =13801.442705 C =13843.130248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.471 5.471 3 N 0.020 4.980 4 N 0.017 4.983 5 N -0.461 5.461 6 C 0.124 3.876 7 C 0.100 3.900 8 H 0.102 0.898 9 O -0.568 6.568 10 C 0.032 3.968 11 O -0.332 6.332 12 C 0.002 3.998 13 C -0.136 4.136 14 C -0.154 4.154 15 C 0.053 3.947 16 C -0.498 4.498 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.832 5.832 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.257 1.257 24 C -0.206 4.206 25 C -0.162 4.162 26 C 0.639 3.361 27 O -0.552 6.552 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.386 0.614 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.108 0.892 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.062 8.802 12.177 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.303 5.303 3 N 0.022 4.978 4 N 0.019 4.981 5 N -0.290 5.290 6 C 0.003 3.997 7 C 0.039 3.961 8 H 0.120 0.880 9 O -0.375 6.375 10 C -0.044 4.044 11 O -0.248 6.248 12 C -0.042 4.042 13 C -0.155 4.155 14 C -0.174 4.174 15 C 0.051 3.949 16 C -0.528 4.528 17 H 0.095 0.905 18 C -0.182 4.182 19 N -0.459 5.459 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.181 1.181 24 C -0.226 4.226 25 C -0.181 4.181 26 C 0.336 3.664 27 O -0.423 6.423 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.236 0.764 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.025 9.791 11.473 23.503 hybrid contribution 0.578 -1.625 -0.096 1.728 sum -17.446 8.166 11.377 22.372 Atomic orbital electron populations 1.22258 0.68645 1.06429 1.05610 1.50387 1.09619 1.02259 1.68033 1.79596 0.95374 1.11428 1.11369 1.79644 1.13398 0.93417 1.11593 1.50103 1.08037 1.02988 1.67922 1.22508 0.83710 0.96212 0.97242 1.22307 0.85117 0.95955 0.92713 0.87962 1.86617 1.55215 1.37916 1.57718 1.23362 0.96521 1.00850 0.83688 1.85870 1.40485 1.69389 1.29072 1.18641 0.90222 1.01331 0.93978 1.20002 0.97971 1.02887 0.94635 1.20889 0.95038 1.02264 0.99163 1.17970 0.93108 0.92221 0.91589 1.19720 1.06977 1.19627 1.06460 0.90503 1.26747 0.99464 0.96966 0.95023 1.69897 1.36709 1.24148 1.15137 0.85204 0.77056 0.78245 0.79186 1.18922 1.19460 1.18093 1.20831 0.99838 1.05840 0.96095 1.20734 0.97918 1.02131 0.97293 1.17072 0.82526 0.85798 0.80983 1.91112 1.78331 1.14674 1.58198 0.88492 0.86372 0.88520 0.85486 0.83469 0.76437 0.90673 0.89593 0.87880 0.87475 0.90279 0.87400 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.42 127.77 1.46 2.39 16 2 N -0.47 -8.33 4.02 -499.29 -2.01 -10.34 16 3 N 0.02 0.37 13.55 37.02 0.50 0.87 16 4 N 0.02 0.33 13.55 37.02 0.50 0.84 16 5 N -0.46 -9.07 3.53 -477.66 -1.69 -10.75 16 6 C 0.12 1.85 6.06 86.38 0.52 2.38 16 7 C 0.10 2.16 3.52 30.59 0.11 2.27 16 8 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 9 O -0.57 -15.18 12.84 -144.36 -1.85 -17.03 16 10 C 0.03 0.80 4.37 71.98 0.31 1.12 16 11 O -0.33 -12.62 10.09 -85.28 -0.86 -13.48 16 12 C 0.00 0.09 6.71 22.79 0.15 0.25 16 13 C -0.14 -6.70 9.92 22.11 0.22 -6.48 16 14 C -0.15 -8.30 8.64 22.49 0.19 -8.11 16 15 C 0.05 2.88 5.57 -21.28 -0.12 2.76 16 16 C -0.50 -26.84 9.04 23.40 0.21 -26.63 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 18 C 0.03 1.61 5.14 85.23 0.44 2.05 16 19 N -0.83 -44.16 10.96 21.82 0.24 -43.93 16 20 Si 0.98 38.51 29.59 68.60 2.03 40.54 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 C -0.21 -9.82 9.74 22.48 0.22 -9.60 16 25 C -0.16 -6.74 8.96 22.11 0.20 -6.54 16 26 C 0.64 14.36 8.41 178.88 1.50 15.86 16 27 O -0.55 -14.94 17.82 -4.73 -0.08 -15.03 16 28 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.13 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.15 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.39 8.49 9.05 -74.06 -0.67 7.82 16 34 H 0.08 1.66 7.65 -2.39 -0.02 1.64 16 35 H 0.09 1.81 7.65 -2.39 -0.02 1.79 16 36 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 38 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.14 4.39 6.27 -2.91 -0.02 4.38 16 Total: -1.00 -72.00 352.68 2.62 -69.38 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.42 Total: 27.23 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 5.42 Total: -28.29 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -2.45 Total: -63.32 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.80 Total: -45.54 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -72.00 2.62 -69.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364618608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.576 kcal (2) G-P(sol) polarization free energy of solvation -72.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds