Wall clock time and date at job start Fri Apr 10 2020 18:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.47159 * 2 1 4 4 C 1.46489 * 120.00139 * 274.19021 * 3 2 1 5 5 C 1.50703 * 109.47313 * 280.51868 * 4 3 2 6 6 H 1.08000 * 119.99844 * 4.08115 * 5 4 3 7 7 C 1.37877 * 120.00056 * 184.08860 * 5 4 3 8 8 N 1.31508 * 120.00049 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99974 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46912 * 90.00081 * 9 7 5 11 11 H 1.48494 * 109.47349 * 209.99831 * 9 7 5 12 12 H 1.48498 * 109.47035 * 330.00223 * 9 7 5 13 13 S 1.65608 * 119.99678 * 94.19207 * 3 2 1 14 14 O 1.42096 * 106.40116 * 330.34242 * 13 3 2 15 15 O 1.42105 * 106.39611 * 197.42850 * 13 3 2 16 16 N 1.65593 * 107.21872 * 83.88733 * 13 3 2 17 17 C 1.46497 * 120.00162 * 64.93405 * 16 13 3 18 18 C 1.53005 * 109.47259 * 164.66238 * 17 16 13 19 19 N 1.46497 * 109.47259 * 179.97438 * 18 17 16 20 20 C 1.47055 * 125.41261 * 89.99621 * 19 18 17 21 21 C 1.54098 * 103.99225 * 179.97438 * 20 19 18 22 22 N 1.47388 * 103.70233 * 0.10895 * 21 20 19 23 23 C 1.33941 * 109.21227 * 359.88942 * 22 21 20 24 24 O 1.21589 * 123.04458 * 180.10235 * 23 22 21 25 25 H 1.08999 * 109.46601 * 65.08075 * 1 2 3 26 26 H 1.09001 * 109.46874 * 185.07994 * 1 2 3 27 27 H 1.09001 * 109.46816 * 305.08334 * 1 2 3 28 28 H 1.08997 * 109.47552 * 240.00143 * 2 1 3 29 29 H 1.09002 * 109.47208 * 120.00080 * 2 1 3 30 30 H 1.09002 * 109.47289 * 40.51658 * 4 3 2 31 31 H 1.09005 * 109.47522 * 160.51483 * 4 3 2 32 32 H 0.97006 * 120.00384 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99606 * 244.93319 * 16 13 3 34 34 H 1.09001 * 109.47150 * 44.65940 * 17 16 13 35 35 H 1.09002 * 109.47203 * 284.66076 * 17 16 13 36 36 H 1.08994 * 109.46980 * 59.99570 * 18 17 16 37 37 H 1.09002 * 109.46881 * 300.00036 * 18 17 16 38 38 H 1.09007 * 110.54968 * 298.59626 * 20 19 18 39 39 H 1.08998 * 110.54466 * 61.26090 * 20 19 18 40 40 H 1.09000 * 110.55035 * 118.66885 * 21 20 19 41 41 H 1.08997 * 110.54793 * 241.47865 * 21 20 19 42 42 H 0.97007 * 125.37958 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1751 2.1027 -1.2652 5 6 3.4586 1.6772 -1.9306 6 1 4.0610 0.8955 -1.4917 7 6 3.8639 2.2857 -3.0995 8 7 3.1303 3.2372 -3.6341 9 14 5.4552 1.7587 -3.9238 10 1 5.1752 0.6612 -4.8842 11 1 6.0430 2.9133 -4.6493 12 1 6.4124 1.2824 -2.8932 13 16 2.3932 2.1269 1.4304 14 8 1.5486 1.5502 2.4169 15 8 2.4307 3.5212 1.1582 16 7 3.9401 1.6852 1.8228 17 6 5.0583 2.0983 0.9712 18 6 6.3740 1.9061 1.7280 19 7 7.4922 2.3185 0.8761 20 6 8.0583 3.6741 0.8102 21 6 9.1933 3.5540 -0.2252 22 7 9.1433 2.1392 -0.6354 23 6 8.1607 1.5211 0.0326 24 8 7.8994 0.3425 -0.1129 25 1 -0.3632 0.4330 -0.9320 26 1 -0.3633 -1.0237 0.0910 27 1 -0.3633 0.5907 0.8410 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.3338 1.8753 -1.9199 31 1 2.2047 3.1749 -1.0709 32 1 3.4152 3.6652 -4.4567 33 1 4.1059 1.1530 2.6167 34 1 4.9428 3.1487 0.7041 35 1 5.0683 1.4920 0.0653 36 1 6.4894 0.8557 1.9951 37 1 6.3640 2.5123 2.6339 38 1 7.3063 4.3869 0.4716 39 1 8.4551 3.9706 1.7812 40 1 9.0046 4.2072 -1.0772 41 1 10.1546 3.7881 0.2320 42 1 9.7301 1.7218 -1.2853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364936257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:52 Heat of formation + Delta-G solvation = -88.509992 kcal Electronic energy + Delta-G solvation = -26872.756837 eV Core-core repulsion = 23015.332160 eV Total energy + Delta-G solvation = -3857.424677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84976 -36.67208 -36.22539 -36.04024 -35.75998 -35.18827 -33.31508 -32.68044 -29.89360 -29.25286 -27.82436 -26.58313 -23.29336 -23.11390 -22.86078 -21.66129 -20.23509 -18.77252 -17.62203 -17.10391 -16.87427 -16.61258 -16.36435 -15.90682 -15.60194 -15.07224 -14.47431 -14.37197 -14.17672 -13.84092 -13.68305 -13.44739 -13.25245 -12.88675 -12.73206 -12.34357 -12.08808 -12.02312 -11.90295 -11.65061 -11.53247 -11.34425 -11.30745 -11.27422 -11.03470 -10.87513 -10.48789 -10.33480 -10.06227 -9.97007 -9.75990 -9.25018 -8.99570 -8.54403 -8.47588 -8.02543 -6.09059 -4.14961 1.30367 2.59043 3.27034 3.30154 3.33987 3.44422 3.57514 3.93662 4.20270 4.34359 4.40314 4.77637 4.86249 5.03679 5.22304 5.25117 5.30091 5.33540 5.45194 5.53698 5.63843 5.74200 5.79780 5.85322 5.99460 6.14810 6.26841 6.38899 6.46604 6.70834 6.75164 6.80876 7.12886 7.29149 7.40468 7.48026 7.56418 7.70941 7.88793 8.18505 8.70747 8.90528 9.51382 10.98464 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.006169 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.520102 B = 4537.512102 C = 5975.343587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.266 1.266 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.979 6.979 16 N -1.129 6.129 17 C 0.099 3.901 18 C 0.149 3.851 19 N -0.629 5.629 20 C 0.089 3.911 21 C 0.093 3.907 22 N -0.745 5.745 23 C 0.701 3.299 24 O -0.580 6.580 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.263 0.737 33 H 0.406 0.594 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 0.346 9.466 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.121 3.879 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.190 1.190 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.963 6.963 16 N -0.888 5.888 17 C -0.028 4.028 18 C 0.025 3.975 19 N -0.368 5.368 20 C -0.035 4.035 21 C -0.032 4.032 22 N -0.408 5.408 23 C 0.401 3.599 24 O -0.457 6.457 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 8.574 0.556 9.672 12.937 hybrid contribution 1.517 -0.716 -0.929 1.917 sum 10.091 -0.160 8.743 13.353 Atomic orbital electron populations 1.22209 0.96936 1.01302 1.02411 1.20955 0.93578 0.82838 1.02121 1.57695 1.78652 1.23048 1.23850 1.19216 0.97146 0.92601 0.78909 1.21549 1.07045 1.20554 1.08377 0.91773 1.24903 0.96995 0.94709 0.96969 1.69942 1.38113 1.24524 1.20159 0.86682 0.84115 0.78038 0.79955 1.20708 1.21370 1.19021 1.01699 0.72486 0.73713 0.72623 1.93551 1.64884 1.79802 1.60142 1.93571 1.86526 1.31039 1.85137 1.55911 1.25010 1.70751 1.37112 1.21788 0.84577 1.02152 0.94330 1.21346 0.83128 1.01607 0.91438 1.46935 1.34989 1.10154 1.44705 1.22426 0.95666 0.85792 0.99575 1.22388 0.98925 0.83791 0.98088 1.45139 1.37671 1.11042 1.46905 1.15866 0.79852 0.84874 0.79291 1.90969 1.70990 1.14048 1.69730 0.92202 0.92458 0.92473 0.90085 0.92188 0.94784 0.92666 0.92718 0.76194 0.90142 0.89003 0.89437 0.89903 0.89478 0.90033 0.89873 0.90124 0.73141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.35 6.01 -4.04 -0.02 2.32 16 3 N -0.99 -20.52 2.84 -115.66 -0.33 -20.85 16 4 C 0.24 6.03 5.46 -5.20 -0.03 6.00 16 5 C -0.54 -14.03 8.50 -34.44 -0.29 -14.32 16 6 H 0.06 1.67 6.49 -52.49 -0.34 1.33 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 9 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 13 S 2.79 54.65 6.07 -107.50 -0.65 54.00 16 14 O -1.00 -20.13 17.09 -57.17 -0.98 -21.10 16 15 O -0.98 -22.42 16.01 -57.17 -0.92 -23.34 16 16 N -1.13 -17.95 6.05 -10.61 -0.06 -18.01 16 17 C 0.10 1.68 6.53 -4.04 -0.03 1.65 16 18 C 0.15 1.99 6.14 -4.04 -0.02 1.97 16 19 N -0.63 -8.79 2.96 -178.82 -0.53 -9.32 16 20 C 0.09 0.87 7.67 -3.17 -0.02 0.84 16 21 C 0.09 0.81 8.08 -2.98 -0.02 0.78 16 22 N -0.75 -9.37 6.39 -64.47 -0.41 -9.78 16 23 C 0.70 11.72 8.60 -88.40 -0.76 10.96 16 24 O -0.58 -12.29 17.53 5.29 0.09 -12.19 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 28 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 29 H 0.06 0.95 7.81 -51.93 -0.41 0.54 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.51 6.77 -51.93 -0.35 1.15 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.41 5.11 8.66 -34.46 -0.30 4.81 16 34 H 0.08 1.46 7.75 -51.93 -0.40 1.06 16 35 H 0.09 1.88 5.92 -51.93 -0.31 1.57 16 36 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.43 4.67 8.96 -40.82 -0.37 4.30 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -36.51 361.43 -9.77 -46.28 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.23 Total: 7.69 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -0.92 Total: 9.58 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -0.60 Total: -82.59 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -1.80 Total: -56.64 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.65 Total: 54.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.51 -9.77 -46.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364936257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.227 kcal (2) G-P(sol) polarization free energy of solvation -36.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds