Wall clock time and date at job start Fri Apr 10 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 N 1.46497 * 109.46960 * 179.97438 * 17 16 14 19 19 C 1.35090 * 119.71759 * 90.00946 * 18 17 16 20 20 C 1.38274 * 119.01314 * 179.97438 * 19 18 17 21 21 C 1.43207 * 120.73296 * 179.97438 * 20 19 18 22 22 N 9.96184 * 134.37488 * 115.27899 * 2 1 3 23 23 C 1.42097 * 118.53169 * 359.97438 * 20 19 18 24 24 O 1.35030 * 120.32739 * 180.02562 * 23 20 19 25 25 N 1.32221 * 119.34550 * 0.02562 * 23 20 19 26 26 C 1.33308 * 120.94772 * 359.72512 * 25 23 20 27 27 O 1.21924 * 119.20367 * 180.30053 * 26 25 23 28 28 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 29 29 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 30 30 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 33 33 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 34 34 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 35 35 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 36 36 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 37 37 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 38 38 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 39 39 H 1.08000 * 120.49171 * 0.02562 * 19 18 17 40 40 H 0.96701 * 114.00560 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 7 4.6328 -0.4746 5.3434 19 6 5.8135 -1.1299 5.3044 20 6 6.2598 -1.7760 6.4426 21 6 7.5056 -2.4822 6.4423 22 7 8.4968 -3.0406 6.4387 23 6 5.4549 -1.7237 7.6125 24 8 5.8561 -2.3414 8.7442 25 7 4.3093 -1.0642 7.5819 26 6 3.9039 -0.4454 6.4729 27 8 2.8445 0.1580 6.4818 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9028 -0.5285 -4.4375 32 1 2.4157 -2.7377 0.9718 33 1 1.6237 -2.2852 2.5003 34 1 0.6904 -2.3002 0.9847 35 1 2.4470 -1.0879 3.9074 36 1 3.9003 -1.6024 3.0180 37 1 4.9935 0.5575 3.5533 38 1 3.5405 1.0726 4.4430 39 1 6.4005 -1.1481 4.3981 40 1 5.2395 -2.2476 9.4833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411756630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:17 Heat of formation + Delta-G solvation = -18.824202 kcal Electronic energy + Delta-G solvation = -26233.484049 eV Core-core repulsion = 22243.637223 eV Total energy + Delta-G solvation = -3989.846826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45197 -39.69115 -39.22241 -37.57406 -36.70931 -35.88911 -35.30779 -33.00861 -32.33690 -31.35662 -30.08113 -26.45647 -26.08181 -25.33196 -25.09232 -23.90392 -21.25626 -20.41268 -19.84691 -18.86670 -18.57573 -17.44224 -16.89681 -16.76134 -16.18606 -15.89846 -15.57661 -15.40549 -15.05044 -14.92494 -14.41989 -14.38760 -14.01404 -13.69389 -13.52593 -13.36791 -13.13653 -12.94353 -12.81400 -12.41216 -12.30820 -12.08100 -11.76642 -11.74113 -11.52049 -11.28849 -11.18089 -10.77281 -10.71683 -10.42107 -10.21938 -9.73771 -9.48139 -9.28873 -9.10433 -8.71688 -7.89646 -6.22853 -4.24369 -0.05646 0.66150 1.64881 2.21508 2.59987 2.69044 3.01974 3.18058 3.27920 3.29648 3.31827 3.33488 3.54687 3.58714 3.93497 4.27931 4.47707 4.49744 4.52012 4.62982 4.85236 5.09464 5.13150 5.21316 5.42668 5.51676 5.63953 5.77759 5.87210 6.09558 6.16695 6.25049 6.39059 6.45988 6.75670 6.98688 7.08595 7.18744 7.20508 7.52306 7.59701 8.01144 8.35501 8.65037 8.78043 9.37755 10.89710 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002730 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.260129 B =10255.171230 C =10852.064932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.583 5.583 13 C 0.084 3.916 14 C 0.513 3.487 15 O -0.553 6.553 16 C -0.157 4.157 17 C 0.103 3.897 18 N -0.509 5.509 19 C 0.276 3.724 20 C -0.199 4.199 21 C 0.275 3.725 22 N -0.406 5.406 23 C 0.490 3.510 24 O -0.440 6.440 25 N -0.604 5.604 26 C 0.653 3.347 27 O -0.506 6.506 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.199 0.801 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -3.346 20.274 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.128 3.872 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.313 5.313 13 C -0.060 4.060 14 C 0.299 3.701 15 O -0.432 6.432 16 C -0.198 4.198 17 C -0.018 4.018 18 N -0.220 5.220 19 C 0.130 3.870 20 C -0.213 4.213 21 C -0.041 4.041 22 N -0.082 5.082 23 C 0.285 3.715 24 O -0.235 6.235 25 N -0.361 5.361 26 C 0.354 3.646 27 O -0.377 6.377 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.216 0.784 40 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 6.443 -3.189 20.278 21.515 hybrid contribution -0.968 0.677 -0.473 1.273 sum 5.475 -2.512 19.805 20.701 Atomic orbital electron populations 1.22470 0.99014 1.01152 0.99447 1.19333 0.90061 0.95211 0.82629 0.91808 1.21126 1.32951 1.14305 0.88440 0.90353 1.24866 0.95605 0.96589 0.95617 1.69869 1.45055 1.40150 0.98031 0.86921 0.80465 0.83783 0.77570 1.20357 1.18747 1.22088 1.47868 1.48717 1.11953 1.22767 1.21651 1.02235 0.82547 0.99543 1.19923 0.79390 0.86937 0.83850 1.90684 1.58620 1.16916 1.76999 1.22001 1.01764 0.99649 0.96381 1.22075 1.01428 0.95984 0.82336 1.46639 1.17312 1.42321 1.15702 1.22828 0.84623 0.81565 0.97947 1.15195 0.95962 1.16118 0.93992 1.24475 0.91666 0.93144 0.94844 1.81389 1.10899 1.09886 1.06029 1.20096 0.85519 0.80823 0.85020 1.84998 1.49697 1.68045 1.20732 1.69751 1.17031 1.22554 1.26789 1.17432 0.85483 0.82377 0.79261 1.91075 1.20856 1.43480 1.82316 0.94675 0.93037 0.92489 0.92343 0.92540 0.92664 0.90543 0.88076 0.88414 0.86869 0.86014 0.78395 0.71836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.65 37.16 0.32 -3.02 16 2 C 0.23 5.19 2.23 -69.08 -0.15 5.04 16 3 H 0.06 1.61 5.96 -51.93 -0.31 1.30 16 4 C -0.53 -13.91 8.95 -34.44 -0.31 -14.22 16 5 H 0.08 2.20 7.89 -52.49 -0.41 1.79 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 8 Si 0.88 21.11 24.37 -169.99 -4.14 16.97 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.58 -10.74 2.75 -175.25 -0.48 -11.22 16 13 C 0.08 1.21 9.48 59.85 0.57 1.77 16 14 C 0.51 8.63 7.67 -10.99 -0.08 8.55 16 15 O -0.55 -11.23 15.31 5.55 0.09 -11.14 16 16 C -0.16 -1.70 4.58 -27.89 -0.13 -1.82 16 17 C 0.10 0.96 4.61 -4.05 -0.02 0.95 16 18 N -0.51 -4.06 2.56 -121.41 -0.31 -4.37 16 19 C 0.28 1.32 10.14 -16.10 -0.16 1.16 16 20 C -0.20 -1.22 5.77 -106.48 -0.61 -1.84 16 21 C 0.28 2.18 14.99 -22.41 -0.34 1.84 16 22 N -0.41 -4.28 18.55 41.90 0.78 -3.51 16 23 C 0.49 3.46 7.92 -15.91 -0.13 3.33 16 24 O -0.44 -2.26 13.06 -16.80 -0.22 -2.48 16 25 N -0.60 -5.95 10.38 -16.46 -0.17 -6.12 16 26 C 0.65 7.44 8.32 -88.51 -0.74 6.71 16 27 O -0.51 -7.84 16.67 4.99 0.08 -7.76 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 30 H 0.06 1.08 6.66 -51.93 -0.35 0.74 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 34 H 0.08 1.13 6.43 -51.93 -0.33 0.80 16 35 H 0.10 1.08 7.40 -51.93 -0.38 0.69 16 36 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 37 H 0.11 0.85 7.98 -51.93 -0.41 0.43 16 38 H 0.12 1.43 7.30 -51.93 -0.38 1.05 16 39 H 0.20 0.19 8.05 -52.49 -0.42 -0.23 16 40 H 0.42 0.49 8.98 45.56 0.41 0.90 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -37.26 345.95 -3.82 -41.08 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.55 Total: -1.81 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -1.88 Total: 10.43 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.59 Total: -50.51 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.26 -3.82 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411756630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.257 kcal (2) G-P(sol) polarization free energy of solvation -37.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds