Wall clock time and date at job start Fri Apr 10 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 N 1.46497 * 109.46960 * 179.97438 * 17 16 14 19 19 C 1.35090 * 119.71759 * 90.00946 * 18 17 16 20 20 C 1.38274 * 119.01314 * 179.97438 * 19 18 17 21 21 C 1.43207 * 120.73296 * 179.97438 * 20 19 18 22 22 N 9.96184 * 134.37488 * 115.27899 * 2 1 3 23 23 C 1.42097 * 118.53169 * 359.97438 * 20 19 18 24 24 O 1.35030 * 120.32739 * 180.02562 * 23 20 19 25 25 N 1.32221 * 119.34550 * 0.02562 * 23 20 19 26 26 C 1.33308 * 120.94772 * 359.72512 * 25 23 20 27 27 O 1.21924 * 119.20367 * 180.30053 * 26 25 23 28 28 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 29 29 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 30 30 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 33 33 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 34 34 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 35 35 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 36 36 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 37 37 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 38 38 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 39 39 H 1.08000 * 120.49171 * 0.02562 * 19 18 17 40 40 H 0.96701 * 114.00560 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 7 4.6328 -0.4746 5.3434 19 6 5.8135 -1.1299 5.3044 20 6 6.2598 -1.7760 6.4426 21 6 7.5056 -2.4822 6.4423 22 7 8.4968 -3.0406 6.4387 23 6 5.4549 -1.7237 7.6125 24 8 5.8561 -2.3414 8.7442 25 7 4.3093 -1.0642 7.5819 26 6 3.9039 -0.4454 6.4729 27 8 2.8445 0.1580 6.4818 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9028 -0.5285 -4.4375 32 1 2.4157 -2.7377 0.9718 33 1 1.6237 -2.2852 2.5003 34 1 0.6904 -2.3002 0.9847 35 1 2.4470 -1.0879 3.9074 36 1 3.9003 -1.6024 3.0180 37 1 4.9935 0.5575 3.5533 38 1 3.5405 1.0726 4.4430 39 1 6.4005 -1.1481 4.3981 40 1 5.2395 -2.2476 9.4833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411756630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:17 Heat of formation + Delta-G solvation = -51.187796 kcal Electronic energy + Delta-G solvation = -26234.887440 eV Core-core repulsion = 22243.637223 eV Total energy + Delta-G solvation = -3991.250217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.13039 -40.88419 -39.95801 -38.31324 -37.50530 -37.27885 -36.09957 -34.78702 -33.25776 -32.54613 -31.33534 -27.69534 -27.15230 -26.75156 -25.99121 -24.69751 -22.74924 -20.99896 -20.53509 -19.93969 -19.41479 -18.94874 -18.18486 -17.74496 -17.28880 -17.12109 -16.73253 -16.40652 -16.02198 -15.53539 -15.49553 -15.05400 -14.96047 -14.77334 -14.64130 -14.53502 -14.20868 -14.09741 -13.86513 -13.82877 -13.62905 -13.52271 -13.12066 -12.99657 -12.59116 -12.51902 -12.30611 -12.08538 -12.04507 -11.57850 -11.36650 -11.32107 -11.14248 -10.78923 -10.70284 -9.84063 -9.39139 -8.33970 -6.37882 -0.54545 0.01840 0.96427 1.27752 1.37161 1.44976 1.60056 1.73829 2.00961 2.10791 2.28500 2.30156 2.64575 2.67028 3.01958 3.02397 3.40359 3.62407 3.76537 3.83373 4.04533 4.12232 4.32182 4.41225 4.46598 4.51514 4.61616 4.63348 4.75614 4.79640 4.92644 4.98897 5.08289 5.12138 5.33111 5.49502 5.71826 6.09484 6.20392 6.46726 6.52660 6.64855 6.74247 6.89598 7.22207 7.36449 8.81786 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002730 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.260129 B =10255.171230 C =10852.064932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.231 3.769 3 H 0.035 0.965 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.937 3.063 9 H -0.258 1.258 10 H -0.260 1.260 11 H -0.298 1.298 12 N -0.596 5.596 13 C 0.081 3.919 14 C 0.506 3.494 15 O -0.594 6.594 16 C -0.142 4.142 17 C 0.111 3.889 18 N -0.503 5.503 19 C 0.300 3.700 20 C -0.198 4.198 21 C 0.304 3.696 22 N -0.451 5.451 23 C 0.500 3.500 24 O -0.437 6.437 25 N -0.628 5.628 26 C 0.652 3.348 27 O -0.560 6.560 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.268 0.732 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.246 0.754 40 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -3.989 21.744 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.128 3.872 3 H 0.053 0.947 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.185 1.185 11 H -0.225 1.225 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.295 3.705 15 O -0.476 6.476 16 C -0.183 4.183 17 C -0.011 4.011 18 N -0.213 5.213 19 C 0.156 3.844 20 C -0.211 4.211 21 C -0.012 4.012 22 N -0.128 5.128 23 C 0.298 3.702 24 O -0.234 6.234 25 N -0.387 5.387 26 C 0.354 3.646 27 O -0.436 6.436 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.262 0.738 40 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 6.765 -3.895 21.813 23.168 hybrid contribution -0.941 0.792 -0.814 1.475 sum 5.824 -3.102 20.999 22.011 Atomic orbital electron populations 1.22347 0.97120 1.02227 0.99826 1.18951 0.91483 0.93645 0.83161 0.94691 1.21366 1.31598 1.13107 0.90020 0.93195 1.25600 0.97094 0.99281 0.95483 1.69992 1.47175 1.42116 0.98595 0.86039 0.79829 0.80530 0.77141 1.18403 1.18473 1.22528 1.47928 1.49335 1.13483 1.21825 1.21857 1.01759 0.80160 1.02349 1.20893 0.78155 0.86626 0.84856 1.90662 1.59801 1.18960 1.78134 1.21938 1.02686 1.00239 0.93391 1.21926 1.01878 0.94834 0.82489 1.46337 1.18015 1.42595 1.14398 1.23457 0.83061 0.78919 0.98972 1.15136 0.95259 1.16451 0.94259 1.24448 0.91223 0.92058 0.93465 1.81438 1.12358 1.11502 1.07501 1.20169 0.84639 0.79693 0.85708 1.85005 1.50197 1.67267 1.20957 1.69692 1.18491 1.23915 1.26581 1.17550 0.85098 0.81851 0.80090 1.91038 1.23300 1.45947 1.83301 0.92702 0.94133 0.91119 0.92328 0.92628 0.88378 0.91149 0.87391 0.84731 0.84498 0.88764 0.73817 0.69838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.21 8.65 71.98 0.62 -5.59 16 2 C 0.23 10.36 2.23 44.24 0.10 10.46 16 3 H 0.04 1.78 5.96 -2.38 -0.01 1.77 16 4 C -0.52 -27.70 8.95 25.60 0.23 -27.47 16 5 H 0.05 2.86 7.89 -2.91 -0.02 2.84 16 6 C 0.02 1.34 5.45 84.66 0.46 1.80 16 7 N -0.94 -55.82 13.96 21.45 0.30 -55.52 16 8 Si 0.94 43.67 24.37 68.60 1.67 45.35 16 9 H -0.26 -11.19 6.87 99.48 0.68 -10.51 16 10 H -0.26 -11.90 6.53 99.48 0.65 -11.25 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 N -0.60 -21.12 2.75 -826.77 -2.28 -23.40 16 13 C 0.08 2.13 9.48 127.77 1.21 3.35 16 14 C 0.51 16.22 7.67 87.66 0.67 16.90 16 15 O -0.59 -23.88 15.31 -3.05 -0.05 -23.93 16 16 C -0.14 -2.62 4.58 29.85 0.14 -2.49 16 17 C 0.11 1.79 4.61 86.38 0.40 2.19 16 18 N -0.50 -6.56 2.56 -656.33 -1.68 -8.24 16 19 C 0.30 1.61 10.14 84.20 0.85 2.46 16 20 C -0.20 -1.76 5.77 -21.07 -0.12 -1.88 16 21 C 0.30 3.93 14.99 88.31 1.32 5.26 16 22 N -0.45 -8.61 18.55 19.03 0.35 -8.26 16 23 C 0.50 5.82 7.92 85.59 0.68 6.50 16 24 O -0.44 -3.46 13.06 -83.02 -1.08 -4.54 16 25 N -0.63 -11.35 10.38 -438.17 -4.55 -15.90 16 26 C 0.65 13.89 8.32 179.61 1.49 15.39 16 27 O -0.56 -17.29 16.67 -5.07 -0.08 -17.37 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 30 H 0.07 2.56 6.66 -2.39 -0.02 2.54 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.10 1.73 6.44 -2.39 -0.02 1.72 16 34 H 0.07 1.94 6.43 -2.38 -0.02 1.92 16 35 H 0.11 1.94 7.40 -2.39 -0.02 1.92 16 36 H 0.13 1.53 8.11 -2.39 -0.02 1.51 16 37 H 0.14 1.58 7.98 -2.39 -0.02 1.56 16 38 H 0.09 2.15 7.30 -2.39 -0.02 2.14 16 39 H 0.25 -0.98 8.05 -2.91 -0.02 -1.01 16 40 H 0.44 0.09 8.98 -74.06 -0.67 -0.57 16 Total: -1.00 -85.37 345.95 1.04 -84.33 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 0.38 Total: 0.60 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 8.06 Total: 26.87 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -7.85 Total: -111.31 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.22 Total: -45.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.67 Total: 45.35 kcal Total: -85.37 1.04 -84.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411756630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.145 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds