Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38284 * 119.97257 * 2 1 4 4 C 1.38243 * 120.11161 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05291 * 359.77102 * 4 3 2 6 6 C 1.50703 * 120.02521 * 180.25246 * 5 4 3 7 7 C 1.38707 * 119.94502 * 0.52634 * 5 4 3 8 8 O 1.35904 * 120.05375 * 179.72566 * 7 5 4 9 9 C 1.42903 * 116.99628 * 179.72747 * 8 7 5 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00271 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47174 * 180.02562 * 14 13 11 16 16 O 1.21289 * 119.99822 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00115 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00498 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99263 * 0.02562 * 18 17 15 20 20 C 1.38941 * 120.00398 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00205 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47116 * 59.99418 * 22 20 18 24 24 H 1.48498 * 109.47600 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47088 * 299.99811 * 22 20 18 26 26 C 1.38129 * 119.96964 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46814 * 269.97474 * 1 2 3 28 28 H 1.09001 * 109.46866 * 29.97774 * 1 2 3 29 29 H 1.09003 * 109.47124 * 149.97808 * 1 2 3 30 30 H 1.08005 * 119.94205 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.97239 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47019 * 270.27636 * 6 5 4 33 33 H 1.08998 * 109.47090 * 30.27533 * 6 5 4 34 34 H 1.09005 * 109.47221 * 150.27358 * 6 5 4 35 35 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 36 36 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 37 37 H 1.09001 * 109.47194 * 299.99575 * 10 9 8 38 38 H 1.08992 * 109.47399 * 59.99748 * 10 9 8 39 39 H 0.97005 * 119.99463 * 0.02562 * 13 11 10 40 40 H 1.08998 * 109.47245 * 300.00900 * 14 13 11 41 41 H 1.09002 * 109.47021 * 60.00278 * 14 13 11 42 42 H 0.97003 * 119.99640 * 0.02562 * 17 15 14 43 43 H 0.97002 * 120.00214 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.02665 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0070 0.0059 6 6 5.7822 0.0114 0.0122 7 6 3.5846 -1.1959 -0.0004 8 8 4.2658 -2.3719 -0.0008 9 6 3.4892 -3.5714 -0.0013 10 6 4.4231 -4.7834 -0.0011 11 6 3.6041 -6.0485 -0.0010 12 8 2.3929 -5.9868 -0.0016 13 7 4.2177 -7.2485 -0.0014 14 6 3.4216 -8.4783 -0.0007 15 6 4.3414 -9.6721 -0.0006 16 8 5.5436 -9.5114 -0.0006 17 7 3.8281 -10.9183 -0.0006 18 6 4.6647 -12.0043 0.0000 19 1 5.7352 -11.8612 0.0009 20 6 4.1355 -13.2890 -0.0005 21 7 2.8330 -13.4631 -0.0010 22 14 5.2755 -14.7688 0.0011 23 1 6.1308 -14.7335 1.2146 24 1 4.4686 -16.0154 0.0009 25 1 6.1336 -14.7339 -1.2104 26 6 2.1971 -1.1966 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6565 2.1325 -0.0004 31 1 4.1176 2.1381 0.0010 32 1 6.1498 0.0154 -1.0139 33 1 6.1408 0.9010 0.5300 34 1 6.1460 -0.8790 0.5251 35 1 2.8605 -3.5969 -0.8914 36 1 2.8604 -3.5975 0.8886 37 1 5.0522 -4.7575 -0.8909 38 1 5.0515 -4.7578 0.8890 39 1 5.1865 -7.2978 -0.0013 40 1 2.7933 -8.5040 0.8896 41 1 2.7923 -8.5042 -0.8903 42 1 2.8666 -11.0467 -0.0010 43 1 2.4635 -14.3600 -0.0018 44 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344167913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = -106.747114 kcal Electronic energy + Delta-G solvation = -25128.390903 eV Core-core repulsion = 21238.271797 eV Total energy + Delta-G solvation = -3890.119106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58232 -39.69503 -38.26743 -37.78742 -34.54800 -34.09827 -33.74730 -32.17567 -31.41216 -30.08858 -29.45731 -27.87936 -25.37006 -24.83470 -24.01008 -22.04416 -21.27611 -20.15930 -19.58526 -18.19946 -17.98797 -16.80911 -16.60425 -16.43527 -15.77163 -15.64034 -15.36331 -15.33890 -14.54825 -14.39813 -14.36433 -13.92386 -13.86209 -13.85393 -13.47734 -13.24003 -13.12171 -12.86950 -12.69689 -12.26152 -12.14663 -11.95627 -11.90637 -11.66262 -11.62208 -11.53268 -11.13323 -11.00360 -10.87237 -10.53525 -10.35160 -9.90852 -9.66649 -8.94484 -8.91590 -8.68899 -8.27364 -8.14453 -6.55130 -3.97479 1.05683 1.21365 2.66546 2.68069 3.11137 3.19424 3.22848 3.47112 3.55862 3.69109 4.08552 4.42885 4.51929 4.61300 4.76065 4.76915 4.81668 4.89372 4.94911 4.99738 5.13090 5.25034 5.29833 5.32183 5.34682 5.43400 5.47229 5.51425 5.53174 5.62202 5.73204 5.83542 5.89059 6.00906 6.01280 6.09211 6.23611 6.35493 6.56028 6.58407 7.19558 7.42248 7.66532 7.87363 8.29001 8.40861 9.00468 9.34576 9.82257 10.61524 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.001767 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.267310 B =15844.805895 C =16665.715223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.126 4.126 6 C -0.104 4.104 7 C 0.138 3.862 8 O -0.314 6.314 9 C 0.076 3.924 10 C -0.139 4.139 11 C 0.517 3.483 12 O -0.552 6.552 13 N -0.703 5.703 14 C 0.108 3.892 15 C 0.426 3.574 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.307 4.307 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.205 4.205 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.413 0.587 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.396 0.604 43 H 0.275 0.725 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 26.499 0.029 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.176 4.176 4 C -0.100 4.100 5 C -0.126 4.126 6 C -0.161 4.161 7 C 0.092 3.908 8 O -0.228 6.228 9 C 0.001 3.999 10 C -0.179 4.179 11 C 0.303 3.697 12 O -0.431 6.431 13 N -0.357 5.357 14 C -0.019 4.019 15 C 0.212 3.788 16 O -0.484 6.484 17 N -0.182 5.182 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.224 4.224 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.251 0.749 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.230 0.770 43 H 0.085 0.915 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.535 26.358 0.029 26.402 hybrid contribution 0.066 -1.083 -0.001 1.085 sum -1.470 25.274 0.028 25.317 Atomic orbital electron populations 1.20826 0.91030 1.02933 1.02531 1.19712 0.96050 0.92487 0.97076 1.20905 0.94101 0.97432 1.05189 1.20839 0.93972 0.96730 0.98466 1.19267 0.96574 0.90319 1.06484 1.20596 0.90513 1.02730 1.02245 1.18757 0.90239 0.85485 0.96320 1.85965 1.36006 1.12330 1.88455 1.22437 0.93214 0.81200 1.03074 1.21428 0.99263 0.90870 1.06332 1.20162 0.88301 0.84738 0.76508 1.90707 1.14189 1.87565 1.50615 1.45671 1.11833 1.04532 1.73691 1.20975 0.93829 0.83772 1.03339 1.19720 0.88920 0.84356 0.85815 1.90498 1.15193 1.85286 1.57468 1.41790 1.09907 1.04065 1.62451 1.19687 0.92045 0.83406 1.48473 0.87687 1.25334 0.96411 0.99247 0.96685 1.69604 1.10657 1.24068 1.49073 0.85859 0.79366 0.79484 0.79179 1.19755 1.20828 1.19750 1.21226 0.92954 0.99241 1.08933 0.90945 0.91406 0.91339 0.86075 0.85523 0.91482 0.91856 0.91062 0.90994 0.91016 0.87561 0.87578 0.74873 0.89744 0.89735 0.77019 0.91487 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.05 -0.50 5.88 -104.64 -0.62 -1.12 16 3 C -0.16 -1.36 9.70 -39.56 -0.38 -1.74 16 4 C -0.08 -0.71 9.70 -39.60 -0.38 -1.09 16 5 C -0.13 -1.26 5.89 -104.47 -0.62 -1.88 16 6 C -0.10 -0.86 9.79 36.01 0.35 -0.51 16 7 C 0.14 1.55 6.66 -39.22 -0.26 1.29 16 8 O -0.31 -3.58 9.18 -19.44 -0.18 -3.76 16 9 C 0.08 0.84 4.03 37.16 0.15 0.99 16 10 C -0.14 -1.47 6.07 -27.88 -0.17 -1.64 16 11 C 0.52 7.44 7.83 -10.98 -0.09 7.35 16 12 O -0.55 -9.54 15.98 5.56 0.09 -9.45 16 13 N -0.70 -10.98 5.53 -61.47 -0.34 -11.32 16 14 C 0.11 1.92 6.15 -5.20 -0.03 1.89 16 15 C 0.43 9.55 7.85 -10.98 -0.09 9.47 16 16 O -0.60 -14.98 15.24 5.55 0.08 -14.90 16 17 N -0.55 -13.36 5.29 -10.97 -0.06 -13.42 16 18 C -0.31 -8.24 9.68 -14.94 -0.14 -8.38 16 19 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.60 13.05 55.50 0.72 -22.88 16 22 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.20 -2.19 8.69 -39.43 -0.34 -2.54 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 35 H 0.07 0.81 7.62 -51.93 -0.40 0.42 16 36 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.41 6.28 7.44 -40.82 -0.30 5.98 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 43 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -31.31 377.67 -7.66 -38.97 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.29 Total: 13.56 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.35 Total: 2.21 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.33 Total: -47.62 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.01 Total: -28.11 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.31 -7.66 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344167913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.777 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds