Wall clock time and date at job start Fri Apr 10 2020 18:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 C 1.50703 * 119.94552 * 179.70844 * 7 6 5 9 9 C 1.53002 * 109.46527 * 269.97627 * 8 7 6 10 10 C 1.50703 * 109.46907 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00049 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47037 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99698 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99954 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99712 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00230 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99748 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47018 * 60.00202 * 21 19 17 23 23 H 1.48497 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46942 * 300.00299 * 21 19 17 25 25 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 26 26 C 1.38145 * 120.05942 * 0.02720 * 25 7 6 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 34 34 H 1.08992 * 109.47037 * 29.97091 * 8 7 6 35 35 H 1.08998 * 109.46989 * 149.98043 * 8 7 6 36 36 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 37 37 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 38 38 H 0.97002 * 119.99865 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47322 * 299.99416 * 13 12 10 40 40 H 1.08997 * 109.47403 * 60.00267 * 13 12 10 41 41 H 0.96998 * 120.00018 * 359.97438 * 16 14 13 42 42 H 0.97004 * 120.00122 * 180.02562 * 20 19 17 43 43 H 1.08009 * 119.97583 * 179.97438 * 25 7 6 44 44 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 6 9.5890 2.3509 1.4454 11 8 10.1905 2.4311 0.3953 12 7 10.2565 2.4400 2.6129 13 6 11.7089 2.6321 2.6134 14 6 12.2061 2.6996 4.0345 15 8 11.4242 2.5977 4.9560 16 7 13.5195 2.8741 4.2812 17 6 13.9719 2.9349 5.5740 18 1 13.2758 2.8434 6.3946 19 6 15.3261 3.1143 5.8284 20 7 16.1731 3.2262 4.8299 21 14 15.9425 3.1980 7.5898 22 1 15.6105 1.9318 8.2910 23 1 17.4146 3.3933 7.5903 24 1 15.2924 4.3358 8.2882 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0015 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 7.6180 2.9875 1.9584 37 1 7.8513 1.2229 1.9588 38 1 9.7753 2.3770 3.4528 39 1 12.1860 1.7971 2.1004 40 1 11.9526 3.5617 2.0991 41 1 14.1448 2.9559 3.5442 42 1 17.1185 3.3511 5.0075 43 1 5.6690 3.9828 0.0018 44 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344169556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:26 Heat of formation + Delta-G solvation = -106.413857 kcal Electronic energy + Delta-G solvation = -24772.228420 eV Core-core repulsion = 20882.123765 eV Total energy + Delta-G solvation = -3890.104655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48780 -39.61568 -38.30116 -37.91846 -34.48052 -33.81561 -33.64866 -32.07280 -31.39156 -31.17207 -29.40643 -27.49340 -24.98104 -24.41181 -23.75247 -22.30091 -21.08677 -20.04775 -19.53225 -18.58949 -18.11123 -17.20290 -16.48515 -16.38950 -15.69445 -15.63184 -15.56157 -15.14843 -14.72248 -14.46470 -14.31479 -14.02629 -13.81214 -13.74935 -13.69140 -13.28619 -13.03105 -12.85724 -12.70314 -12.19067 -12.11452 -11.89096 -11.86934 -11.63641 -11.52024 -11.24652 -11.10965 -11.00515 -10.89815 -10.51442 -10.32310 -9.71346 -9.63579 -9.25304 -8.79029 -8.64272 -8.31962 -8.11097 -6.52228 -3.94443 1.08974 1.15799 2.84088 2.84389 3.13237 3.20901 3.23591 3.35079 3.56561 3.73311 4.10888 4.43177 4.46525 4.58355 4.64683 4.65350 4.78703 4.87564 4.94387 4.98616 5.04704 5.11846 5.16166 5.24325 5.27484 5.32050 5.44673 5.55200 5.58552 5.68444 5.85649 5.91637 5.96256 6.00927 6.06395 6.08325 6.11169 6.45566 6.52423 6.69050 7.11468 7.44946 7.81643 7.91023 8.42904 8.47346 9.03596 9.38319 9.86290 10.64519 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.001640 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.473001 B =17072.433636 C =17571.138033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.122 3.878 5 C -0.207 4.207 6 C -0.075 4.075 7 C -0.116 4.116 8 C -0.060 4.060 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.552 6.552 12 N -0.709 5.709 13 C 0.108 3.892 14 C 0.427 3.573 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.075 4.075 26 C -0.150 4.150 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.131 0.869 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.356 -5.211 -11.495 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.077 3.923 5 C -0.226 4.226 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.098 4.098 9 C -0.174 4.174 10 C 0.296 3.704 11 O -0.430 6.430 12 N -0.363 5.363 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.176 4.176 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.093 4.093 26 C -0.169 4.169 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.249 0.751 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.349 -5.050 -11.606 28.334 hybrid contribution 0.687 -0.215 0.866 1.126 sum -24.663 -5.265 -10.740 27.410 Atomic orbital electron populations 1.21778 0.92739 1.02884 1.03544 1.22776 0.95868 0.82026 1.01422 1.86061 1.19206 1.29260 1.88762 1.19000 0.82148 0.94238 0.96883 1.21222 0.94357 0.97945 1.09046 1.20888 0.94178 0.96953 0.97302 1.19859 0.95825 0.93023 1.02952 1.20266 0.89812 1.04276 0.95415 1.21642 0.92066 1.04606 0.99053 1.20639 0.89860 0.76410 0.83516 1.90686 1.70182 1.50783 1.31394 1.45767 1.08094 1.72972 1.09422 1.20946 0.81327 1.02787 0.96888 1.19764 0.83815 0.85582 0.89551 1.90493 1.55095 1.57382 1.45494 1.41792 1.05738 1.61581 1.09222 1.19688 0.92386 1.47455 0.84083 0.87726 1.25323 0.95703 0.96715 0.99904 1.69608 1.03938 1.48405 1.31508 0.85868 0.77414 0.79122 0.81531 1.19782 1.20839 1.19777 1.20924 0.91983 0.98957 0.97471 1.20427 0.95237 0.94765 1.06461 0.91529 0.90357 0.91481 0.92070 0.92001 0.85647 0.85637 0.90218 0.90132 0.88726 0.88804 0.75105 0.89918 0.89905 0.77031 0.91526 0.85158 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.28 37.16 0.38 -0.31 16 2 C 0.05 0.34 5.46 37.16 0.20 0.54 16 3 O -0.32 -2.99 10.14 -19.41 -0.20 -3.19 16 4 C 0.12 1.20 6.69 -39.21 -0.26 0.94 16 5 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 6 C -0.08 -0.68 9.69 -39.61 -0.38 -1.07 16 7 C -0.12 -1.12 5.13 -104.60 -0.54 -1.66 16 8 C -0.06 -0.62 4.63 -27.88 -0.13 -0.75 16 9 C -0.13 -1.43 5.68 -27.88 -0.16 -1.59 16 10 C 0.51 7.62 7.83 -10.98 -0.09 7.53 16 11 O -0.55 -9.95 15.98 5.56 0.09 -9.86 16 12 N -0.71 -11.51 5.53 -61.47 -0.34 -11.85 16 13 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 14 C 0.43 9.76 7.85 -10.98 -0.09 9.68 16 15 O -0.60 -15.23 15.24 5.55 0.08 -15.15 16 16 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 17 C -0.31 -8.32 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 20 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 21 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.08 -0.69 9.69 -39.61 -0.38 -1.08 16 26 C -0.15 -1.42 9.99 -39.43 -0.39 -1.82 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 31 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 32 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.41 6.53 7.44 -40.82 -0.30 6.23 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -32.11 379.08 -7.80 -39.90 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.33 Total: 13.41 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.46 Total: 2.30 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.33 Total: -48.58 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.02 Total: -28.20 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.11 -7.80 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344169556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.510 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds