Wall clock time and date at job start Fri Apr 10 2020 18:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 C 1.50703 * 119.94552 * 179.70844 * 7 6 5 9 9 C 1.53002 * 109.46527 * 269.97627 * 8 7 6 10 10 C 1.50703 * 109.46907 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00049 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47037 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99698 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99954 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99712 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00230 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99748 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47018 * 60.00202 * 21 19 17 23 23 H 1.48497 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46942 * 300.00299 * 21 19 17 25 25 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 26 26 C 1.38145 * 120.05942 * 0.02720 * 25 7 6 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 34 34 H 1.08992 * 109.47037 * 29.97091 * 8 7 6 35 35 H 1.08998 * 109.46989 * 149.98043 * 8 7 6 36 36 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 37 37 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 38 38 H 0.97002 * 119.99865 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47322 * 299.99416 * 13 12 10 40 40 H 1.08997 * 109.47403 * 60.00267 * 13 12 10 41 41 H 0.96998 * 120.00018 * 359.97438 * 16 14 13 42 42 H 0.97004 * 120.00122 * 180.02562 * 20 19 17 43 43 H 1.08009 * 119.97583 * 179.97438 * 25 7 6 44 44 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 6 9.5890 2.3509 1.4454 11 8 10.1905 2.4311 0.3953 12 7 10.2565 2.4400 2.6129 13 6 11.7089 2.6321 2.6134 14 6 12.2061 2.6996 4.0345 15 8 11.4242 2.5977 4.9560 16 7 13.5195 2.8741 4.2812 17 6 13.9719 2.9349 5.5740 18 1 13.2758 2.8434 6.3946 19 6 15.3261 3.1143 5.8284 20 7 16.1731 3.2262 4.8299 21 14 15.9425 3.1980 7.5898 22 1 15.6105 1.9318 8.2910 23 1 17.4146 3.3933 7.5903 24 1 15.2924 4.3358 8.2882 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0015 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 7.6180 2.9875 1.9584 37 1 7.8513 1.2229 1.9588 38 1 9.7753 2.3770 3.4528 39 1 12.1860 1.7971 2.1004 40 1 11.9526 3.5617 2.0991 41 1 14.1448 2.9559 3.5442 42 1 17.1185 3.3511 5.0075 43 1 5.6690 3.9828 0.0018 44 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344169556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:25 Heat of formation + Delta-G solvation = -127.326320 kcal Electronic energy + Delta-G solvation = -24773.135252 eV Core-core repulsion = 20882.123765 eV Total energy + Delta-G solvation = -3891.011488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21521 -40.89597 -39.91207 -38.74029 -36.25046 -35.26457 -34.61260 -33.37468 -32.60498 -31.81163 -30.39202 -28.84950 -26.57266 -25.19545 -24.67823 -22.92422 -21.86728 -21.37328 -21.15480 -20.05280 -19.21043 -18.53576 -17.27161 -17.17181 -17.03184 -17.01227 -16.72512 -16.39359 -16.00958 -15.84220 -15.65628 -15.28441 -14.79505 -14.53735 -14.39641 -14.30112 -13.99228 -13.92095 -13.55479 -13.45609 -13.38179 -13.29463 -12.89238 -12.60891 -12.52745 -12.46966 -12.27744 -12.13483 -12.00433 -11.58280 -11.56166 -11.55589 -10.96495 -10.55651 -10.17494 -10.07341 -9.92776 -9.01918 -8.50870 -6.01358 0.41569 0.44965 1.38259 1.43060 1.53925 1.64575 1.91653 2.08475 2.29064 2.33577 2.81275 3.14237 3.16274 3.70376 3.84665 3.97459 4.05920 4.08993 4.12439 4.18951 4.25628 4.34332 4.37794 4.43681 4.46815 4.48061 4.52668 4.65828 4.73708 4.92180 4.94214 4.96131 5.15107 5.20202 5.22528 5.32833 5.36909 5.39134 5.43352 5.74262 5.86810 5.91802 6.46570 6.48897 6.57346 7.03411 7.21602 7.44645 7.94562 8.65692 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.001640 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.473001 B =17072.433636 C =17571.138033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.110 3.890 5 C -0.211 4.211 6 C -0.080 4.080 7 C -0.124 4.124 8 C -0.052 4.052 9 C -0.124 4.124 10 C 0.512 3.488 11 O -0.583 6.583 12 N -0.711 5.711 13 C 0.120 3.880 14 C 0.432 3.568 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.340 4.340 18 H 0.087 0.913 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.079 4.079 26 C -0.163 4.163 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.414 0.586 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.143 0.857 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 -5.786 -11.378 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.065 3.935 5 C -0.229 4.229 6 C -0.098 4.098 7 C -0.124 4.124 8 C -0.090 4.090 9 C -0.164 4.164 10 C 0.300 3.700 11 O -0.463 6.463 12 N -0.365 5.365 13 C -0.008 4.008 14 C 0.219 3.781 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.104 0.896 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.097 4.097 26 C -0.182 4.182 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.252 0.748 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.161 0.839 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.219 -5.631 -11.507 29.181 hybrid contribution 0.859 -0.061 0.772 1.156 sum -25.360 -5.692 -10.735 28.121 Atomic orbital electron populations 1.21807 0.91636 1.04114 1.03142 1.23034 0.96808 0.80889 1.02173 1.86048 1.19046 1.31166 1.88729 1.19224 0.82597 0.94680 0.96960 1.21433 0.94246 0.98643 1.08585 1.21099 0.94567 0.97246 0.96898 1.19822 0.95253 0.93493 1.03848 1.20160 0.90300 1.03675 0.94885 1.21671 0.88603 1.06216 0.99865 1.21341 0.91339 0.74957 0.82348 1.90676 1.71217 1.52109 1.32339 1.45824 1.07097 1.73389 1.10166 1.20757 0.82843 1.03673 0.93489 1.20469 0.82992 0.83517 0.91145 1.90469 1.55644 1.58012 1.47109 1.41849 1.06538 1.62422 1.08683 1.19717 0.92909 1.49583 0.84709 0.89552 1.26122 0.95338 0.95703 1.03850 1.69675 1.04310 1.48396 1.33185 0.84928 0.77255 0.79058 0.76741 1.19488 1.19623 1.19515 1.21093 0.91923 0.99554 0.97094 1.20623 0.95593 0.95202 1.06761 0.91856 0.88304 0.91942 0.91206 0.91281 0.83896 0.84324 0.90855 0.90833 0.86961 0.86972 0.74773 0.88966 0.88990 0.76730 0.91064 0.83946 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.05 0.50 5.46 71.98 0.39 0.90 16 3 O -0.34 -6.02 10.14 -92.39 -0.94 -6.95 16 4 C 0.11 2.06 6.69 22.51 0.15 2.21 16 5 C -0.21 -3.42 9.04 22.37 0.20 -3.22 16 6 C -0.08 -1.32 9.69 22.25 0.22 -1.11 16 7 C -0.12 -2.20 5.13 -19.85 -0.10 -2.30 16 8 C -0.05 -1.00 4.63 29.85 0.14 -0.87 16 9 C -0.12 -2.41 5.68 29.85 0.17 -2.24 16 10 C 0.51 14.58 7.83 87.66 0.69 15.27 16 11 O -0.58 -20.46 15.98 -3.03 -0.05 -20.51 16 12 N -0.71 -22.26 5.53 -466.78 -2.58 -24.84 16 13 C 0.12 4.33 6.15 85.64 0.53 4.85 16 14 C 0.43 19.76 7.85 87.66 0.69 20.45 16 15 O -0.62 -31.94 15.24 -3.05 -0.05 -31.98 16 16 N -0.56 -28.00 5.29 -306.99 -1.62 -29.62 16 17 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 18 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 21 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 C -0.08 -1.35 9.69 22.25 0.22 -1.13 16 26 C -0.16 -2.95 9.99 22.37 0.22 -2.73 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.64 7.68 -2.39 -0.02 0.62 16 31 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 32 H 0.14 1.70 6.30 -2.91 -0.02 1.68 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 12.69 7.44 -92.71 -0.69 12.00 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 42 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.09 379.08 2.21 -65.88 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.39 Total: 40.90 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.53 Total: 11.77 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -3.92 Total: -102.66 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.03 Total: -59.45 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -68.09 2.21 -65.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344169556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.446 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds