Wall clock time and date at job start Fri Apr 10 2020 18:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99598 * 2 1 3 5 5 C 1.53006 * 109.46997 * 60.00177 * 4 2 1 6 6 C 1.50699 * 109.47240 * 180.02562 * 5 4 2 7 7 C 1.38231 * 119.99938 * 269.72641 * 6 5 4 8 8 C 1.38240 * 120.00003 * 179.76654 * 7 6 5 9 9 C 1.38234 * 119.99512 * 0.50752 * 8 7 6 10 10 C 1.38233 * 120.00582 * 359.74684 * 9 8 7 11 11 C 1.38234 * 119.99715 * 90.00050 * 6 5 4 12 12 C 1.50706 * 109.47238 * 120.00079 * 2 1 3 13 13 O 1.21274 * 120.00034 * 94.99654 * 12 2 1 14 14 N 1.34775 * 119.99541 * 275.00104 * 12 2 1 15 15 C 1.46506 * 119.99693 * 180.02562 * 14 12 2 16 16 C 1.50706 * 109.47053 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99605 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99919 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99720 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00536 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99809 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00258 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99953 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47430 * 89.99806 * 23 21 19 25 25 H 1.48506 * 109.46714 * 210.00039 * 23 21 19 26 26 H 1.48497 * 109.47078 * 329.99361 * 23 21 19 27 27 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96698 * 114.00355 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 33 33 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 34 34 H 1.08996 * 109.47261 * 59.99820 * 5 4 2 35 35 H 1.08004 * 120.00067 * 359.97438 * 7 6 5 36 36 H 1.07992 * 120.00228 * 180.22850 * 8 7 6 37 37 H 1.08004 * 120.00046 * 179.72233 * 9 8 7 38 38 H 1.07997 * 120.00338 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.00700 * 359.97438 * 11 6 5 40 40 H 0.97003 * 120.00315 * 359.97438 * 14 12 2 41 41 H 1.09002 * 109.46511 * 299.99280 * 15 14 12 42 42 H 1.08999 * 109.46950 * 59.99713 * 15 14 12 43 43 H 0.97000 * 119.99733 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00107 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -0.0001 -2.4985 6 6 2.0319 -0.7109 -3.7289 7 6 3.2370 -0.3423 -4.2968 8 6 3.6997 -0.9976 -5.4227 9 6 2.9521 -2.0143 -5.9867 10 6 1.7444 -2.3795 -5.4219 11 6 1.2843 -1.7277 -4.2929 12 6 2.0324 -0.7104 1.2305 13 8 2.3207 -1.8871 1.1760 14 7 2.1610 -0.0380 2.3914 15 6 2.6499 -0.7285 3.5875 16 6 2.7011 0.2400 4.7410 17 8 2.3629 1.3936 4.5797 18 7 3.1226 -0.1757 5.9518 19 6 3.1696 0.7055 7.0009 20 1 2.8685 1.7327 6.8574 21 6 3.6047 0.2771 8.2491 22 7 3.6502 1.1218 9.2546 23 14 4.1262 -1.4995 8.4972 24 1 5.5791 -1.6322 8.2208 25 1 3.8499 -1.9052 9.8988 26 1 3.3639 -2.3733 7.5696 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.9703 1.4235 -0.0004 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 0.4400 -0.0001 -2.4985 34 1 1.8933 1.0275 -2.4985 35 1 3.8188 0.4554 -3.8590 36 1 4.6430 -0.7121 -5.8643 37 1 3.3113 -2.5233 -6.8689 38 1 1.1601 -3.1736 -5.8628 39 1 0.3408 -2.0130 -3.8516 40 1 1.9307 0.9032 2.4349 41 1 1.9776 -1.5508 3.8325 42 1 3.6493 -1.1203 3.3978 43 1 3.3934 -1.0982 6.0806 44 1 3.9543 0.8227 10.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344186450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:55 Heat of formation + Delta-G solvation = -132.245567 kcal Electronic energy + Delta-G solvation = -25935.889002 eV Core-core repulsion = 22044.664200 eV Total energy + Delta-G solvation = -3891.224802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55376 -40.38942 -39.99423 -38.21856 -36.34375 -35.51160 -34.75860 -33.85009 -32.40007 -31.71829 -29.84891 -29.00139 -26.67595 -25.85930 -23.42445 -23.37140 -21.67048 -21.49447 -21.06373 -20.53911 -19.29214 -17.70486 -17.53112 -17.28400 -16.99548 -16.74929 -16.51258 -16.37521 -15.93114 -15.86245 -15.47961 -15.04900 -14.91134 -14.34972 -14.27344 -14.17521 -14.03100 -13.98900 -13.71507 -13.57062 -13.42700 -13.22070 -12.97778 -12.77108 -12.56974 -12.46302 -12.09163 -12.01784 -11.98181 -11.64126 -11.59884 -11.43336 -10.70943 -10.58562 -10.35655 -10.22685 -9.77587 -9.53969 -8.46867 -6.09106 0.48786 0.54503 1.29541 1.32500 1.41788 1.42618 1.77251 1.91180 2.19073 2.81892 2.92807 3.09032 3.14770 3.52985 3.62690 3.85252 3.97962 4.04956 4.15457 4.23041 4.33887 4.35040 4.36057 4.39452 4.47740 4.69227 4.70670 4.71986 4.82778 4.88454 4.98956 5.15858 5.17095 5.21582 5.27185 5.35934 5.46683 5.62428 5.67256 5.78521 5.86560 6.18084 6.32193 6.46977 6.64107 6.76697 7.05722 7.27430 7.76216 8.69495 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.002109 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.853120 B =13274.366360 C =13594.672943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 O -0.549 6.549 4 C -0.113 4.113 5 C -0.070 4.070 6 C -0.091 4.091 7 C -0.132 4.132 8 C -0.130 4.130 9 C -0.137 4.137 10 C -0.129 4.129 11 C -0.131 4.131 12 C 0.488 3.512 13 O -0.569 6.569 14 N -0.701 5.701 15 C 0.114 3.886 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.063 0.937 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.960 3.040 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.233 1.233 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.393 0.607 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.416 0.584 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.392 0.608 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -8.898 -28.902 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.089 3.911 3 O -0.357 6.357 4 C -0.151 4.151 5 C -0.107 4.107 6 C -0.091 4.091 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.149 4.149 12 C 0.274 3.726 13 O -0.449 6.449 14 N -0.356 5.356 15 C -0.013 4.013 16 C 0.231 3.769 17 O -0.499 6.499 18 N -0.217 5.217 19 C -0.461 4.461 20 H 0.081 0.919 21 C -0.209 4.209 22 N -0.564 5.564 23 Si 0.779 3.221 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.157 1.157 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.243 0.757 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.255 0.745 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.228 0.772 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.246 -8.765 -28.789 30.269 hybrid contribution 0.970 -0.322 1.040 1.458 sum -2.277 -9.088 -27.750 29.288 Atomic orbital electron populations 1.21874 0.89592 1.03853 1.04666 1.21359 0.97334 0.82409 0.90019 1.86586 1.28540 1.23945 1.96622 1.21919 1.01190 0.99974 0.92049 1.20558 1.01703 0.98993 0.89454 1.20071 0.95226 0.96906 0.96944 1.21323 0.96170 1.00736 0.96726 1.21440 1.00519 0.96491 0.96336 1.21455 0.95279 0.97916 1.00816 1.21449 0.96793 1.00188 0.96276 1.21334 1.00612 0.96261 0.96644 1.22010 0.77437 0.87463 0.85674 1.90684 1.51253 1.17123 1.85827 1.45819 1.65663 1.15667 1.08427 1.20935 1.02706 0.94018 0.83680 1.20513 0.82526 0.89266 0.84593 1.90544 1.54210 1.21213 1.83935 1.41931 1.59301 1.11898 1.08606 1.19025 1.44213 0.94036 0.88814 0.91880 1.26081 0.96405 1.04310 0.94067 1.69780 1.46367 1.37861 1.02437 0.85436 0.80056 0.77036 0.79524 1.18044 1.19802 1.15655 0.88329 0.92027 0.89907 0.75745 0.91615 0.90600 0.89556 0.89747 0.85247 0.84658 0.84523 0.84521 0.85036 0.74509 0.87894 0.87644 0.77243 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.47 71.98 0.61 -1.92 16 2 C 0.13 2.66 1.00 -11.54 -0.01 2.65 16 3 O -0.55 -10.43 11.62 -148.98 -1.73 -12.16 16 4 C -0.11 -2.01 3.97 30.60 0.12 -1.89 16 5 C -0.07 -1.01 4.85 29.85 0.14 -0.87 16 6 C -0.09 -1.48 5.13 -19.87 -0.10 -1.58 16 7 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 8 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 9 C -0.14 -1.90 10.05 22.27 0.22 -1.67 16 10 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 11 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 12 C 0.49 13.23 6.69 87.66 0.59 13.81 16 13 O -0.57 -18.38 16.09 -3.01 -0.05 -18.43 16 14 N -0.70 -20.96 5.44 -466.77 -2.54 -23.50 16 15 C 0.11 3.67 6.15 85.63 0.53 4.20 16 16 C 0.44 19.20 7.85 87.66 0.69 19.89 16 17 O -0.61 -31.61 15.24 -3.07 -0.05 -31.66 16 18 N -0.58 -26.38 5.09 -306.98 -1.56 -27.94 16 19 C -0.33 -18.78 10.16 84.04 0.85 -17.93 16 20 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 22 N -0.92 -54.17 13.96 21.66 0.30 -53.86 16 23 Si 0.96 37.85 27.74 68.60 1.90 39.75 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 25 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 26 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 27 H 0.10 1.36 6.43 -2.39 -0.02 1.34 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.39 5.55 9.04 -74.06 -0.67 4.88 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.53 7.87 -2.39 -0.02 1.51 16 33 H 0.09 1.08 6.37 -2.39 -0.02 1.07 16 34 H 0.08 1.18 7.62 -2.39 -0.02 1.16 16 35 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.42 13.13 6.87 -92.71 -0.64 12.50 16 41 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 44 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -74.08 371.90 0.41 -73.66 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -0.85 Total: 46.39 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 4.99 Total: 7.75 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.80 Total: -105.30 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.83 Total: -62.25 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Total: -74.08 0.41 -73.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344186450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.582 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds