Wall clock time and date at job start Fri Apr 10 2020 18:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47510 * 2 1 4 4 H 1.09005 * 109.47078 * 54.99846 * 3 2 1 5 5 C 1.50703 * 109.47470 * 174.99965 * 3 2 1 6 6 H 1.07994 * 120.00238 * 120.00170 * 5 3 2 7 7 C 1.37879 * 119.99733 * 299.99837 * 5 3 2 8 8 N 1.31514 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99779 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46934 * 90.00711 * 9 7 5 11 11 H 1.48501 * 109.46755 * 210.00156 * 9 7 5 12 12 H 1.48500 * 109.47251 * 330.00017 * 9 7 5 13 13 N 1.46507 * 109.47234 * 295.00122 * 3 2 1 14 14 C 1.34771 * 120.00129 * 84.99955 * 13 3 2 15 15 O 1.21283 * 120.00137 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00069 * 180.02562 * 14 13 3 17 17 N 1.46504 * 109.47310 * 179.97438 * 16 14 13 18 18 C 1.34695 * 123.06819 * 89.99803 * 17 16 14 19 19 O 1.21233 * 126.39055 * 11.92442 * 18 17 16 20 20 C 1.53783 * 107.22043 * 191.90320 * 18 17 16 21 21 H 1.09001 * 113.73509 * 212.29297 * 20 18 17 22 22 C 1.53088 * 104.78916 * 87.26099 * 20 18 17 23 23 C 1.48932 * 113.36762 * 214.76619 * 22 20 18 24 24 C 1.28900 * 124.81897 * 17.41290 * 23 22 20 25 25 C 1.49605 * 123.47731 * 357.81378 * 24 23 22 26 26 C 1.49325 * 113.58556 * 11.10960 * 25 24 23 27 27 H 1.09002 * 107.41656 * 205.20059 * 26 25 24 28 28 C 1.34536 * 123.25310 * 270.69596 * 17 16 14 29 29 O 1.21225 * 126.51916 * 9.63966 * 28 17 16 30 30 H 1.09000 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47150 * 300.00599 * 1 2 3 32 32 H 1.09011 * 109.46944 * 59.99964 * 1 2 3 33 33 H 1.09003 * 109.47047 * 240.00137 * 2 1 3 34 34 H 1.09000 * 109.46589 * 120.00379 * 2 1 3 35 35 H 0.97001 * 119.99828 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99513 * 264.99835 * 13 3 2 37 37 H 1.09001 * 109.47241 * 59.99699 * 16 14 13 38 38 H 1.08998 * 109.47186 * 299.99916 * 16 14 13 39 39 H 1.09005 * 108.70168 * 335.77319 * 22 20 18 40 40 H 1.09004 * 108.69985 * 93.89069 * 22 20 18 41 41 H 1.08002 * 117.55659 * 197.49930 * 23 22 20 42 42 H 1.08004 * 118.16507 * 177.76108 * 24 23 22 43 43 H 1.09002 * 108.63914 * 250.09009 * 25 24 23 44 44 H 1.09005 * 108.64122 * 132.12684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.4428 2.1127 2.0838 11 1 6.4390 -0.3112 2.1547 12 1 6.6132 0.8392 0.0271 13 7 1.6525 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3391 2.6328 -0.4341 16 6 0.0365 3.3377 -2.6548 17 7 -1.3224 3.8701 -2.5272 18 6 -1.5857 5.1138 -2.0820 19 8 -0.7815 6.0076 -1.9272 20 6 -3.0970 5.1886 -1.8074 21 1 -3.5269 6.1744 -1.9850 22 6 -3.2578 4.6917 -0.3684 23 6 -4.5138 3.9230 -0.1457 24 6 -5.2363 3.4070 -1.0802 25 6 -4.9292 3.5536 -2.5370 26 6 -3.5761 4.1242 -2.8079 27 1 -3.6131 4.6009 -3.7874 28 6 -2.4244 3.1600 -2.8298 29 8 -2.4727 1.9749 -3.0803 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.8292 -0.0619 2.9495 36 1 2.2720 2.1231 -1.9978 37 1 0.0675 2.6131 -3.4685 38 1 0.7279 4.1530 -2.8679 39 1 -2.4090 4.0536 -0.1221 40 1 -3.2532 5.5520 0.3010 41 1 -4.8438 3.7896 0.8739 42 1 -6.1089 2.8381 -0.7946 43 1 -5.6784 4.2049 -2.9872 44 1 -4.9940 2.5723 -3.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346720718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:29 Heat of formation + Delta-G solvation = -80.320629 kcal Electronic energy + Delta-G solvation = -28271.018046 eV Core-core repulsion = 24382.044878 eV Total energy + Delta-G solvation = -3888.973168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46920 -39.06330 -38.58702 -37.55960 -35.74996 -34.96841 -32.59880 -32.24902 -31.46370 -30.94023 -28.33023 -26.66812 -25.11652 -24.06823 -22.98562 -22.06074 -20.92268 -19.59081 -19.38181 -18.23043 -17.54655 -17.17480 -16.57997 -16.26146 -16.01737 -15.34643 -15.33904 -14.89645 -14.74748 -14.42747 -14.29700 -14.05077 -13.54134 -13.44076 -13.19764 -12.93064 -12.71476 -12.65316 -12.64146 -12.09742 -11.76863 -11.44547 -11.40449 -11.26358 -10.98285 -10.85085 -10.76453 -10.39557 -10.32025 -10.18874 -10.15387 -9.92285 -9.62045 -9.14754 -9.07421 -8.92259 -8.51254 -7.88908 -6.13741 -4.23446 1.50659 2.17775 2.27457 2.64845 3.22844 3.24267 3.30799 3.32546 3.66007 3.96792 4.03254 4.12988 4.35921 4.45201 4.81782 4.87075 4.97808 5.05173 5.08995 5.17624 5.20737 5.25010 5.29402 5.45436 5.51643 5.60040 5.64300 5.89478 5.96197 6.40708 6.45568 6.47684 6.67312 6.70679 6.80342 7.05349 7.18323 7.24725 7.34054 7.40629 7.59035 7.67789 7.74384 7.87816 8.16127 8.57873 8.73669 9.03060 9.43580 10.91540 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.003549 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.007359 B = 7887.556022 C = 8205.794105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.490 3.510 15 O -0.539 6.539 16 C 0.074 3.926 17 N -0.563 5.563 18 C 0.532 3.468 19 O -0.473 6.473 20 C -0.100 4.100 21 H 0.132 0.868 22 C -0.096 4.096 23 C -0.139 4.139 24 C -0.160 4.160 25 C -0.070 4.070 26 C -0.122 4.122 27 H 0.113 0.887 28 C 0.543 3.457 29 O -0.464 6.464 30 H 0.022 0.978 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 8.439 -11.043 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.273 3.727 15 O -0.417 6.417 16 C -0.051 4.051 17 N -0.306 5.306 18 C 0.320 3.680 19 O -0.343 6.343 20 C -0.121 4.121 21 H 0.150 0.850 22 C -0.133 4.133 23 C -0.157 4.157 24 C -0.178 4.178 25 C -0.107 4.107 26 C -0.144 4.144 27 H 0.131 0.869 28 C 0.331 3.669 29 O -0.334 6.334 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.554 8.120 -10.234 20.313 hybrid contribution 1.525 -0.161 -0.170 1.543 sum -14.029 7.960 -10.405 19.194 Atomic orbital electron populations 1.21817 0.98208 0.98090 1.01163 1.21932 0.92657 0.99688 1.02300 1.18811 0.94257 0.89178 0.80680 0.93321 1.21223 0.90621 1.39151 1.06378 0.92036 1.24884 0.98651 0.94737 0.95362 1.69896 1.35164 1.37503 1.09334 0.86447 0.84786 0.77652 0.78213 1.20557 1.21058 1.19825 1.46437 1.14157 1.55620 1.18807 1.20389 0.83423 0.79978 0.88951 1.90659 1.51282 1.59712 1.40067 1.21719 0.82989 1.01231 0.99188 1.46666 1.08281 1.15356 1.60293 1.21660 0.91951 0.80658 0.73724 1.90761 1.55022 1.40399 1.48109 1.22662 0.91461 1.01031 0.96957 0.84967 1.20253 0.98729 1.01161 0.93162 1.21499 0.95666 0.98907 0.99663 1.21686 1.00979 1.00972 0.94185 1.19310 0.93193 1.02593 0.95641 1.21031 0.95543 0.95954 1.01823 0.86884 1.20394 0.84766 0.87459 0.74260 1.90765 1.84893 1.13255 1.44469 0.95892 0.93368 0.94179 0.95004 0.88275 0.92544 0.77821 0.86749 0.86378 0.88234 0.89504 0.87195 0.86972 0.89391 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.12 5.45 -26.74 -0.15 -3.27 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.34 5.02 -54.93 -0.28 -14.62 16 14 C 0.49 9.57 6.47 -10.99 -0.07 9.50 16 15 O -0.54 -12.23 12.78 5.55 0.07 -12.16 16 16 C 0.07 1.08 6.14 -5.19 -0.03 1.05 16 17 N -0.56 -8.00 2.02 -115.64 -0.23 -8.23 16 18 C 0.53 7.29 6.72 -9.46 -0.06 7.23 16 19 O -0.47 -7.78 17.58 5.60 0.10 -7.68 16 20 C -0.10 -1.00 4.07 -89.78 -0.37 -1.37 16 21 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 22 C -0.10 -1.13 5.16 -28.68 -0.15 -1.28 16 23 C -0.14 -1.48 9.75 -36.31 -0.35 -1.83 16 24 C -0.16 -1.51 9.88 -35.99 -0.36 -1.87 16 25 C -0.07 -0.58 5.66 -30.22 -0.17 -0.75 16 26 C -0.12 -1.15 2.42 -93.43 -0.23 -1.38 16 27 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 28 C 0.54 7.47 7.36 -11.33 -0.08 7.39 16 29 O -0.46 -7.83 17.38 5.61 0.10 -7.73 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 32 H 0.04 0.92 5.65 -51.92 -0.29 0.62 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.39 6.79 8.54 -40.82 -0.35 6.45 16 37 H 0.11 1.43 8.02 -51.93 -0.42 1.01 16 38 H 0.12 1.51 7.83 -51.93 -0.41 1.10 16 39 H 0.10 1.58 6.61 -51.93 -0.34 1.24 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.80 7.81 -51.93 -0.41 0.39 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.28 357.60 -7.74 -41.03 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.25 Total: 7.90 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.25 Total: 4.61 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.12 Total: -46.96 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.27 Total: -27.57 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.28 -7.74 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346720718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.294 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds