Wall clock time and date at job start Fri Apr 10 2020 18:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46552 * 179.97438 * 10 9 8 12 12 N 1.28879 * 125.44976 * 90.00091 * 11 10 9 13 13 C 1.31043 * 107.91730 * 179.97438 * 12 11 10 14 14 N 1.33313 * 106.90008 * 359.97438 * 13 12 11 15 15 N 1.28783 * 125.44762 * 269.68869 * 11 10 9 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46496 * 125.97468 * 359.94647 * 17 2 1 19 19 C 1.50702 * 109.47635 * 89.99791 * 18 17 2 20 20 H 1.07999 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46844 * 60.00071 * 23 21 19 25 25 H 1.48494 * 109.46947 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47031 * 300.00020 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 32 32 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 34 34 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 35 35 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 36 36 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 37 37 H 1.08002 * 126.55107 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47030 * 210.00125 * 18 17 2 39 39 H 1.09005 * 109.47259 * 329.99077 * 18 17 2 40 40 H 0.96997 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 7 6.8158 7.1733 0.0308 12 7 6.7411 7.9121 1.0842 13 6 6.6143 9.1571 0.6953 14 7 6.6152 9.1486 -0.6378 15 7 6.7444 7.9217 -1.0148 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4845 -0.0124 19 6 1.6941 -2.9555 -1.4354 20 1 1.9094 -2.2838 -2.2532 21 6 1.2765 -4.2440 -1.6933 22 7 1.0148 -5.0622 -0.6974 23 14 1.0824 -4.8275 -3.4572 24 1 2.3876 -4.7262 -4.1585 25 1 0.6260 -6.2406 -3.4637 26 1 0.0802 -3.9799 -4.1515 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6587 1.0778 0.0037 32 1 6.6148 3.2075 0.0131 33 1 5.0323 5.3759 -0.8654 34 1 5.0339 5.3670 0.9146 35 1 7.5137 5.4022 0.9118 36 1 7.5114 5.4109 -0.8682 37 1 6.5268 10.0244 1.3329 38 1 2.5851 -3.1070 0.4978 39 1 0.8919 -2.5584 0.5019 40 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348183313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:43 Heat of formation + Delta-G solvation = 189.014816 kcal Electronic energy + Delta-G solvation = -25193.169821 eV Core-core repulsion = 21276.921073 eV Total energy + Delta-G solvation = -3916.248748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.77835 -40.87195 -39.79493 -36.84731 -34.94001 -34.58567 -33.52540 -33.34695 -31.53537 -30.92776 -30.04533 -26.73337 -26.37080 -25.29165 -24.39529 -23.14243 -22.64960 -21.74607 -20.09561 -19.73577 -18.41509 -18.04217 -17.30603 -16.70744 -16.50861 -16.36649 -15.80954 -15.54000 -14.94061 -14.78732 -14.61041 -14.31214 -14.18048 -13.99538 -13.19670 -13.01360 -12.76333 -12.48757 -12.36143 -12.31493 -12.09028 -11.70625 -11.43311 -11.42720 -11.40849 -11.12568 -10.86017 -10.84246 -10.51888 -10.29726 -10.13270 -9.75829 -9.64699 -9.50826 -8.65810 -7.96883 -7.46661 -6.27121 -4.35015 0.73725 1.24972 1.81045 2.29310 2.55467 2.99282 3.22086 3.26047 3.29748 3.48879 3.57416 3.74532 3.77682 3.92090 4.16048 4.30123 4.31359 4.37630 4.99741 5.06324 5.13201 5.24942 5.32601 5.38265 5.61745 5.67035 5.85064 5.95965 6.09039 6.12178 6.43745 6.46121 6.58224 6.91012 6.97954 7.04941 7.44238 7.65184 7.79406 7.87205 7.91058 8.03402 8.40787 8.62592 8.73076 9.31412 10.79995 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.001955 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.860814 B =14316.246701 C =14510.676656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.280 3.720 5 N -0.640 5.640 6 C 0.717 3.283 7 O -0.560 6.560 8 N -0.743 5.743 9 C 0.129 3.871 10 C 0.118 3.882 11 N -0.137 5.137 12 N -0.306 5.306 13 C 0.145 3.855 14 N -0.285 5.285 15 N -0.054 5.054 16 N -0.322 5.322 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.400 0.600 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.237 0.763 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.807 21.360 4.403 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.026 3.974 5 N -0.290 5.290 6 C 0.416 3.584 7 O -0.434 6.434 8 N -0.402 5.402 9 C 0.002 3.998 10 C -0.003 4.003 11 N -0.049 5.049 12 N -0.156 5.156 13 C -0.158 4.158 14 N -0.156 5.156 15 N -0.048 5.048 16 N -0.152 5.152 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.177 0.823 31 H 0.242 0.758 32 H 0.235 0.765 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.438 20.090 3.905 23.445 hybrid contribution 0.428 0.140 -0.391 0.596 sum 11.865 20.229 3.514 23.714 Atomic orbital electron populations 1.20382 0.87907 1.03893 1.02546 1.21065 0.94936 0.87101 1.00802 1.21229 0.89689 0.99841 1.21272 1.18625 0.86401 0.89272 1.03078 1.41282 1.07807 1.03448 1.76427 1.15452 0.84318 0.80506 0.78108 1.90915 1.23347 1.73417 1.55740 1.44606 1.08278 1.05202 1.82078 1.21314 0.94393 0.79182 1.04887 1.22345 0.99929 0.70130 1.07861 1.49992 1.43645 1.10333 1.00979 1.74778 1.21109 1.04158 1.15540 1.27447 1.01706 0.95110 0.91519 1.75939 1.17731 1.10178 1.11755 1.79077 1.14803 0.96662 1.14265 1.77243 1.00073 1.08222 1.29687 1.48984 1.00821 1.07786 1.52339 1.19688 0.95986 0.71308 0.98908 1.21287 1.46966 0.97962 0.91357 0.91790 1.24927 0.94667 0.96039 0.98130 1.69907 1.44805 1.07013 1.31196 0.86412 0.78815 0.77668 0.83775 1.20004 1.20960 1.19912 0.91069 0.89886 0.90609 0.82275 0.75773 0.76519 0.89819 0.89846 0.85682 0.85520 0.74668 0.93001 0.92767 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.92 6.93 -82.28 -0.57 1.35 16 3 C -0.29 -5.86 9.52 -39.83 -0.38 -6.24 16 4 C 0.28 5.49 8.11 -154.36 -1.25 4.24 16 5 N -0.64 -9.09 5.46 -15.51 -0.08 -9.18 16 6 C 0.72 9.45 8.53 -86.92 -0.74 8.71 16 7 O -0.56 -9.65 13.47 5.28 0.07 -9.57 16 8 N -0.74 -5.47 5.56 -65.22 -0.36 -5.83 16 9 C 0.13 0.88 6.00 -4.04 -0.02 0.85 16 10 C 0.12 0.47 6.72 -4.04 -0.03 0.44 16 11 N -0.14 -1.03 4.00 -10.67 -0.04 -1.08 16 12 N -0.31 -2.45 12.13 29.34 0.36 -2.09 16 13 C 0.15 1.03 13.26 -91.58 -1.21 -0.18 16 14 N -0.29 -2.78 12.50 29.33 0.37 -2.42 16 15 N -0.05 -0.52 13.25 60.35 0.80 0.28 16 16 N -0.32 -7.22 12.59 31.44 0.40 -6.83 16 17 N -0.32 -7.39 3.59 -58.32 -0.21 -7.60 16 18 C 0.26 6.55 5.81 -5.20 -0.03 6.51 16 19 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 23 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 31 H 0.41 4.35 8.84 -40.82 -0.36 3.99 16 32 H 0.40 1.40 8.49 -40.82 -0.35 1.05 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.24 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -36.24 356.07 -6.67 -42.92 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.74 Total: 2.92 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -4.30 Total: 1.27 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 1.96 Total: -58.79 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.24 -6.67 -42.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348183313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.933 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds