Wall clock time and date at job start Fri Apr 10 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46552 * 179.97438 * 10 9 8 12 12 N 1.28879 * 125.44976 * 90.00091 * 11 10 9 13 13 C 1.31043 * 107.91730 * 179.97438 * 12 11 10 14 14 N 1.33313 * 106.90008 * 359.97438 * 13 12 11 15 15 N 1.28783 * 125.44762 * 269.68869 * 11 10 9 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46496 * 125.97468 * 359.94647 * 17 2 1 19 19 C 1.50702 * 109.47635 * 89.99791 * 18 17 2 20 20 H 1.07999 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46844 * 60.00071 * 23 21 19 25 25 H 1.48494 * 109.46947 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47031 * 300.00020 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 32 32 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 34 34 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 35 35 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 36 36 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 37 37 H 1.08002 * 126.55107 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47030 * 210.00125 * 18 17 2 39 39 H 1.09005 * 109.47259 * 329.99077 * 18 17 2 40 40 H 0.96997 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 7 6.8158 7.1733 0.0308 12 7 6.7411 7.9121 1.0842 13 6 6.6143 9.1571 0.6953 14 7 6.6152 9.1486 -0.6378 15 7 6.7444 7.9217 -1.0148 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4845 -0.0124 19 6 1.6941 -2.9555 -1.4354 20 1 1.9094 -2.2838 -2.2532 21 6 1.2765 -4.2440 -1.6933 22 7 1.0148 -5.0622 -0.6974 23 14 1.0824 -4.8275 -3.4572 24 1 2.3876 -4.7262 -4.1585 25 1 0.6260 -6.2406 -3.4637 26 1 0.0802 -3.9799 -4.1515 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6587 1.0778 0.0037 32 1 6.6148 3.2075 0.0131 33 1 5.0323 5.3759 -0.8654 34 1 5.0339 5.3670 0.9146 35 1 7.5137 5.4022 0.9118 36 1 7.5114 5.4109 -0.8682 37 1 6.5268 10.0244 1.3329 38 1 2.5851 -3.1070 0.4978 39 1 0.8919 -2.5584 0.5019 40 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348183313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:42 Heat of formation + Delta-G solvation = 162.149453 kcal Electronic energy + Delta-G solvation = -25194.334791 eV Core-core repulsion = 21276.921073 eV Total energy + Delta-G solvation = -3917.413717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.35074 -42.32521 -41.02109 -37.54744 -36.30346 -35.44970 -35.20588 -34.08136 -33.02972 -32.61027 -30.82015 -28.53418 -27.86805 -26.11857 -24.96265 -24.87269 -23.31440 -22.86120 -21.41788 -21.16572 -19.43441 -18.77801 -18.71488 -18.03906 -17.70530 -17.19361 -17.12797 -16.50792 -16.34065 -15.90026 -15.81277 -15.55886 -15.33640 -14.82375 -14.64220 -14.31732 -13.80746 -13.73524 -13.66710 -13.56013 -13.29281 -13.14271 -12.83841 -12.71229 -12.66934 -12.24065 -12.11920 -12.03200 -12.01669 -11.60869 -11.42099 -11.36660 -11.21948 -10.72463 -10.40061 -9.56562 -9.09022 -8.31556 -6.49300 0.12398 0.68729 1.02375 1.25368 1.26364 1.39233 1.40367 1.49509 1.63492 2.08828 2.34951 2.36530 2.97889 3.09323 3.18327 3.31959 3.49032 3.85678 3.86369 4.06933 4.16745 4.44210 4.46743 4.56799 4.75697 4.76938 4.78088 4.82533 4.88585 4.94203 5.01397 5.05924 5.15613 5.20221 5.31517 5.54542 5.81310 5.82952 5.96488 6.27241 6.61838 6.70990 7.11452 7.21572 7.32327 7.35412 8.73860 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.001955 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.860814 B =14316.246701 C =14510.676656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.630 5.630 6 C 0.716 3.284 7 O -0.601 6.601 8 N -0.712 5.712 9 C 0.134 3.866 10 C 0.119 3.881 11 N -0.132 5.132 12 N -0.319 5.319 13 C 0.149 3.851 14 N -0.315 5.315 15 N -0.077 5.077 16 N -0.357 5.357 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.553 4.553 20 H 0.050 0.950 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.266 1.266 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.425 0.575 32 H 0.424 0.576 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.273 0.727 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.847 22.473 4.133 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.283 5.283 6 C 0.415 3.585 7 O -0.478 6.478 8 N -0.372 5.372 9 C 0.007 3.993 10 C -0.001 4.001 11 N -0.045 5.045 12 N -0.169 5.169 13 C -0.154 4.154 14 N -0.186 5.186 15 N -0.070 5.070 16 N -0.187 5.187 17 N -0.126 5.126 18 C 0.157 3.843 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.198 1.198 26 H -0.191 1.191 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.182 0.818 31 H 0.263 0.737 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.288 0.712 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.554 21.233 3.637 24.933 hybrid contribution 0.163 -0.076 -0.232 0.294 sum 12.717 21.157 3.405 24.918 Atomic orbital electron populations 1.20496 0.85535 1.04307 1.04071 1.21723 0.96615 0.86495 0.99492 1.21395 0.90119 0.99797 1.21669 1.18906 0.87992 0.88892 1.00522 1.41242 1.07206 1.03533 1.76282 1.15638 0.84995 0.80194 0.77706 1.90884 1.25479 1.73957 1.57465 1.44273 1.07928 1.05069 1.79908 1.21245 0.96161 0.78421 1.03426 1.22606 0.98274 0.68365 1.10808 1.50255 1.42617 1.11174 1.00489 1.74781 1.21643 1.04635 1.15817 1.28213 1.00121 0.95975 0.91078 1.75909 1.18918 1.10530 1.13216 1.79021 1.15756 0.97102 1.15151 1.77163 1.00017 1.09681 1.31884 1.48761 1.01679 1.07441 1.54673 1.19237 0.94929 0.72449 0.97720 1.21412 1.47594 0.98325 0.91812 0.93221 1.25719 0.93996 0.95922 1.02163 1.69990 1.45026 1.07406 1.33111 0.85431 0.78742 0.77644 0.78829 1.20032 1.19813 1.19118 0.88913 0.91430 0.88099 0.81781 0.73707 0.73732 0.91551 0.91222 0.82696 0.82808 0.71163 0.95634 0.93083 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.87 9.89 71.24 0.70 -2.17 16 2 C 0.09 3.64 6.93 41.39 0.29 3.93 16 3 C -0.30 -12.06 9.52 22.11 0.21 -11.85 16 4 C 0.29 11.41 8.11 133.31 1.08 12.49 16 5 N -0.63 -17.11 5.46 -321.23 -1.75 -18.86 16 6 C 0.72 17.81 8.53 179.06 1.53 19.34 16 7 O -0.60 -20.29 13.47 -4.02 -0.05 -20.35 16 8 N -0.71 -8.76 5.56 -478.52 -2.66 -11.42 16 9 C 0.13 1.58 6.00 86.38 0.52 2.10 16 10 C 0.12 0.60 6.72 86.38 0.58 1.18 16 11 N -0.13 -1.75 4.00 -187.68 -0.75 -2.50 16 12 N -0.32 -4.51 12.13 -61.09 -0.74 -5.25 16 13 C 0.15 1.87 13.26 180.68 2.40 4.27 16 14 N -0.32 -5.88 12.50 -61.11 -0.76 -6.64 16 15 N -0.08 -1.40 13.25 37.02 0.49 -0.91 16 16 N -0.36 -16.26 12.59 -54.44 -0.69 -16.95 16 17 N -0.34 -16.38 3.59 -338.44 -1.22 -17.59 16 18 C 0.28 14.42 5.81 85.63 0.50 14.92 16 19 C -0.55 -30.73 9.39 25.60 0.24 -30.49 16 20 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 21 C 0.02 1.25 5.46 84.66 0.46 1.72 16 22 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 23 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 29 H 0.10 2.81 8.14 -2.38 -0.02 2.80 16 30 H 0.16 6.49 5.91 -2.91 -0.02 6.48 16 31 H 0.42 8.29 8.84 -92.71 -0.82 7.47 16 32 H 0.42 1.45 8.49 -92.70 -0.79 0.66 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.16 -0.09 8.14 -2.39 -0.02 -0.10 16 36 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.27 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 2.65 7.65 -2.38 -0.02 2.63 16 40 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -80.73 356.07 2.19 -78.54 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.49 Total: 12.88 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 8.50 Total: 15.43 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -7.79 Total: -131.24 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -80.73 2.19 -78.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348183313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.693 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds