Wall clock time and date at job start Fri Apr 10 2020 18:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 N 1.46905 * 109.47027 * 60.00231 * 3 2 1 5 5 C 1.46901 * 110.99870 * 60.00108 * 4 3 2 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 3 7 7 O 1.21292 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00095 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99386 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99786 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00292 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47191 * 60.00031 * 13 11 9 15 15 H 1.48504 * 109.47312 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47299 * 300.00334 * 13 11 9 17 17 C 1.50703 * 109.47072 * 180.02562 * 3 2 1 18 18 O 1.20825 * 120.00065 * 25.00515 * 17 3 2 19 19 O 1.34223 * 119.99864 * 204.99993 * 17 3 2 20 20 C 1.45206 * 116.99951 * 180.02562 * 19 17 3 21 21 C 1.50697 * 109.47130 * 300.00352 * 3 2 1 22 22 C 1.38236 * 120.00218 * 329.72262 * 21 3 2 23 23 C 1.38227 * 120.00188 * 179.76636 * 22 21 3 24 24 C 1.38238 * 119.99962 * 0.50768 * 23 22 21 25 25 C 1.38232 * 119.99723 * 359.75259 * 24 23 22 26 26 C 1.38233 * 120.00367 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.09012 * 109.46801 * 299.99814 * 1 2 3 29 29 H 1.08996 * 109.47352 * 59.99588 * 1 2 3 30 30 H 1.08999 * 109.47049 * 240.00024 * 2 1 3 31 31 H 1.08996 * 109.47352 * 120.00412 * 2 1 3 32 32 H 1.00901 * 110.99869 * 296.04819 * 4 3 2 33 33 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 34 34 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 35 35 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 36 36 H 0.97001 * 119.99428 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.46838 * 300.00320 * 20 19 17 38 38 H 1.09003 * 109.46803 * 60.00134 * 20 19 17 39 39 H 1.08997 * 109.47103 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99347 * 0.02562 * 22 21 3 41 41 H 1.07999 * 120.00427 * 180.23511 * 23 22 21 42 42 H 1.08001 * 119.99899 * 179.72185 * 24 23 22 43 43 H 1.08012 * 119.99757 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00187 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5504 2.1350 1.1995 5 6 2.0215 1.4688 2.4211 6 6 1.4999 2.2054 3.6279 7 8 0.8046 3.1888 3.4845 8 7 1.8069 1.7719 4.8666 9 6 1.3329 2.4423 5.9646 10 1 0.7137 3.3180 5.8368 11 6 1.6489 1.9952 7.2416 12 7 2.4027 0.9300 7.3969 13 14 1.0036 2.9090 8.7375 14 1 -0.4812 2.9094 8.7149 15 1 1.4801 2.2358 9.9725 16 1 1.4993 4.3086 8.7146 17 6 3.5471 1.4425 -0.0006 18 8 4.1510 0.4942 -0.4433 19 8 4.2184 2.4959 0.4905 20 6 5.6684 2.4273 0.4572 21 6 1.5376 2.1529 -1.2304 22 6 1.3126 1.4430 -2.3950 23 6 0.8472 2.0938 -3.5222 24 6 0.6168 3.4564 -3.4879 25 6 0.8469 4.1672 -2.3249 26 6 1.3070 3.5155 -1.1960 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.5438 2.2050 1.1910 33 1 1.6580 0.4413 2.4379 34 1 3.1113 1.4690 2.4378 35 1 2.3633 0.9857 4.9814 36 1 2.6237 0.6181 8.2885 37 1 6.0049 1.5687 1.0383 38 1 6.0036 2.3216 -0.5746 39 1 6.0852 3.3398 0.8833 40 1 1.4965 0.3791 -2.4229 41 1 0.6678 1.5386 -4.4310 42 1 0.2574 3.9657 -4.3699 43 1 0.6672 5.2320 -2.2982 44 1 1.4872 4.0709 -0.2875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352833658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:48 Heat of formation + Delta-G solvation = -84.966188 kcal Electronic energy + Delta-G solvation = -27781.636900 eV Core-core repulsion = 23892.462285 eV Total energy + Delta-G solvation = -3889.174615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13508 -39.31477 -38.28667 -36.91604 -36.17656 -33.95546 -32.31306 -31.30370 -31.06722 -30.49370 -28.37975 -27.12041 -25.83577 -24.16857 -22.74569 -22.40129 -22.05854 -19.61129 -19.21954 -17.99305 -17.53324 -17.39257 -16.69368 -16.33028 -15.85427 -15.21438 -15.18186 -14.89987 -14.68321 -14.21566 -13.97577 -13.95783 -13.60367 -13.46641 -13.25364 -13.15019 -12.74951 -12.41872 -12.27570 -12.09896 -11.95552 -11.78496 -11.63671 -11.51445 -11.21116 -11.05076 -10.98096 -10.78963 -10.67083 -10.44645 -10.43620 -10.21663 -9.50443 -8.93888 -8.85349 -8.55846 -8.18023 -7.97131 -6.41936 -3.82943 1.15922 1.37687 2.21507 2.77015 3.19964 3.25885 3.30037 3.73538 3.86318 3.91776 4.21965 4.43793 4.68731 4.74958 4.92725 4.93958 5.08117 5.11883 5.14413 5.15827 5.22419 5.25163 5.30404 5.43647 5.52361 5.56170 5.60890 5.71821 5.81086 5.87453 5.89058 5.99625 6.04638 6.19052 6.20624 6.37613 6.41700 6.49016 6.54974 6.91700 6.96856 7.45911 7.54799 7.81163 8.04867 8.59912 9.16921 9.52948 10.03879 10.75693 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.003430 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.905885 B = 8160.227107 C = 8607.785443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.170 3.830 4 N -0.640 5.640 5 C 0.042 3.958 6 C 0.446 3.554 7 O -0.580 6.580 8 N -0.562 5.562 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.483 3.517 18 O -0.511 6.511 19 O -0.330 6.330 20 C 0.031 3.969 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.077 4.077 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.363 0.637 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -0.658 -19.364 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C 0.077 3.923 4 N -0.275 5.275 5 C -0.091 4.091 6 C 0.231 3.769 7 O -0.465 6.465 8 N -0.198 5.198 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.325 3.675 18 O -0.399 6.399 19 O -0.245 6.245 20 C -0.063 4.063 21 C -0.086 4.086 22 C -0.122 4.122 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.096 4.096 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.038 0.120 -19.371 19.399 hybrid contribution -0.134 -1.016 0.893 1.359 sum 0.903 -0.897 -18.478 18.522 Atomic orbital electron populations 1.21868 0.94118 1.02538 1.02840 1.22172 0.97258 0.94869 1.04277 1.19547 0.87216 0.93911 0.91676 1.60296 1.18368 1.50670 0.98193 1.21826 1.01023 0.96134 0.90070 1.19574 0.86058 0.87449 0.83818 1.90526 1.42054 1.28147 1.85725 1.41828 1.46012 1.27784 1.04206 1.19655 1.29214 1.10666 0.83356 0.87892 1.25261 0.96921 0.96570 0.99126 1.69610 1.36953 1.23542 1.24182 0.85917 0.79150 0.79305 0.79840 1.19897 1.21004 1.19862 1.23395 0.90760 0.79939 0.73397 1.90640 1.70042 1.35481 1.43696 1.86698 1.21265 1.42550 1.73949 1.23308 0.77026 1.03754 1.02231 1.19305 1.02043 0.94260 0.93008 1.21124 0.98545 1.00147 0.92343 1.21053 1.00838 0.94779 0.98102 1.21212 0.99554 0.94394 0.98092 1.21227 1.00061 1.00158 0.93012 1.21326 0.95462 0.93663 0.99104 0.91787 0.92141 0.91669 0.89885 0.90438 0.81398 0.93061 0.89733 0.77499 0.91809 0.91925 0.92261 0.87960 0.85669 0.86096 0.86244 0.85809 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.25 37.16 0.34 -1.39 16 2 C -0.15 -1.82 3.64 -26.73 -0.10 -1.92 16 3 C 0.17 2.37 0.52 -133.90 -0.07 2.31 16 4 N -0.64 -10.30 4.27 -103.58 -0.44 -10.75 16 5 C 0.04 0.75 5.43 -4.98 -0.03 0.72 16 6 C 0.45 10.40 7.82 -10.99 -0.09 10.31 16 7 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 8 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 10 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 13 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.48 7.51 5.51 36.01 0.20 7.70 16 18 O -0.51 -8.48 15.84 -18.75 -0.30 -8.78 16 19 O -0.33 -5.11 9.63 -39.24 -0.38 -5.49 16 20 C 0.03 0.37 10.56 101.05 1.07 1.43 16 21 C -0.09 -1.10 3.98 -104.62 -0.42 -1.52 16 22 C -0.10 -1.16 7.79 -39.59 -0.31 -1.47 16 23 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 24 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 26 C -0.08 -1.00 9.31 -39.58 -0.37 -1.36 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.74 6.76 -51.92 -0.35 0.39 16 29 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 30 H 0.08 0.97 6.24 -51.93 -0.32 0.65 16 31 H 0.08 1.02 6.40 -51.93 -0.33 0.68 16 32 H 0.36 5.89 6.72 -39.29 -0.26 5.63 16 33 H 0.05 0.84 6.30 -51.93 -0.33 0.51 16 34 H 0.08 1.51 6.64 -51.93 -0.34 1.17 16 35 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.13 1.28 6.17 -52.49 -0.32 0.96 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.15 2.06 7.40 -52.49 -0.39 1.67 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.84 362.79 -6.89 -38.73 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -5.77 Total: 16.16 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.20 Total: 1.96 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.22 Total: -48.71 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.59 Total: -29.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.84 -6.89 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352833658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.237 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds