Wall clock time and date at job start Fri Apr 10 2020 18:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 N 1.46905 * 109.47027 * 60.00231 * 3 2 1 5 5 C 1.46901 * 110.99870 * 60.00108 * 4 3 2 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 3 7 7 O 1.21292 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00095 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99386 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99786 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00292 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47191 * 60.00031 * 13 11 9 15 15 H 1.48504 * 109.47312 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47299 * 300.00334 * 13 11 9 17 17 C 1.50703 * 109.47072 * 180.02562 * 3 2 1 18 18 O 1.20825 * 120.00065 * 25.00515 * 17 3 2 19 19 O 1.34223 * 119.99864 * 204.99993 * 17 3 2 20 20 C 1.45206 * 116.99951 * 180.02562 * 19 17 3 21 21 C 1.50697 * 109.47130 * 300.00352 * 3 2 1 22 22 C 1.38236 * 120.00218 * 329.72262 * 21 3 2 23 23 C 1.38227 * 120.00188 * 179.76636 * 22 21 3 24 24 C 1.38238 * 119.99962 * 0.50768 * 23 22 21 25 25 C 1.38232 * 119.99723 * 359.75259 * 24 23 22 26 26 C 1.38233 * 120.00367 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.09012 * 109.46801 * 299.99814 * 1 2 3 29 29 H 1.08996 * 109.47352 * 59.99588 * 1 2 3 30 30 H 1.08999 * 109.47049 * 240.00024 * 2 1 3 31 31 H 1.08996 * 109.47352 * 120.00412 * 2 1 3 32 32 H 1.00901 * 110.99869 * 296.04819 * 4 3 2 33 33 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 34 34 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 35 35 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 36 36 H 0.97001 * 119.99428 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.46838 * 300.00320 * 20 19 17 38 38 H 1.09003 * 109.46803 * 60.00134 * 20 19 17 39 39 H 1.08997 * 109.47103 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99347 * 0.02562 * 22 21 3 41 41 H 1.07999 * 120.00427 * 180.23511 * 23 22 21 42 42 H 1.08001 * 119.99899 * 179.72185 * 24 23 22 43 43 H 1.08012 * 119.99757 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00187 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5504 2.1350 1.1995 5 6 2.0215 1.4688 2.4211 6 6 1.4999 2.2054 3.6279 7 8 0.8046 3.1888 3.4845 8 7 1.8069 1.7719 4.8666 9 6 1.3329 2.4423 5.9646 10 1 0.7137 3.3180 5.8368 11 6 1.6489 1.9952 7.2416 12 7 2.4027 0.9300 7.3969 13 14 1.0036 2.9090 8.7375 14 1 -0.4812 2.9094 8.7149 15 1 1.4801 2.2358 9.9725 16 1 1.4993 4.3086 8.7146 17 6 3.5471 1.4425 -0.0006 18 8 4.1510 0.4942 -0.4433 19 8 4.2184 2.4959 0.4905 20 6 5.6684 2.4273 0.4572 21 6 1.5376 2.1529 -1.2304 22 6 1.3126 1.4430 -2.3950 23 6 0.8472 2.0938 -3.5222 24 6 0.6168 3.4564 -3.4879 25 6 0.8469 4.1672 -2.3249 26 6 1.3070 3.5155 -1.1960 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.5438 2.2050 1.1910 33 1 1.6580 0.4413 2.4379 34 1 3.1113 1.4690 2.4378 35 1 2.3633 0.9857 4.9814 36 1 2.6237 0.6181 8.2885 37 1 6.0049 1.5687 1.0383 38 1 6.0036 2.3216 -0.5746 39 1 6.0852 3.3398 0.8833 40 1 1.4965 0.3791 -2.4229 41 1 0.6678 1.5386 -4.4310 42 1 0.2574 3.9657 -4.3699 43 1 0.6672 5.2320 -2.2982 44 1 1.4872 4.0709 -0.2875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352833658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:47 Heat of formation + Delta-G solvation = -105.109325 kcal Electronic energy + Delta-G solvation = -27782.510372 eV Core-core repulsion = 23892.462285 eV Total energy + Delta-G solvation = -3890.048086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.26724 -40.37995 -40.01059 -38.07149 -37.41342 -35.95547 -33.58281 -33.18375 -32.07556 -31.36411 -29.47405 -28.43150 -27.21255 -25.84915 -23.76777 -23.32077 -23.03378 -21.19730 -20.51382 -19.94064 -18.79490 -18.57912 -17.90085 -17.38583 -17.30478 -16.68333 -16.43815 -16.21727 -15.87472 -15.78761 -15.29817 -15.26070 -14.82444 -14.64632 -14.32697 -14.17965 -13.97639 -13.75856 -13.49022 -13.40188 -13.30190 -13.00569 -12.92002 -12.83804 -12.64285 -12.42758 -12.12506 -12.10099 -11.96715 -11.80208 -11.73202 -11.54904 -11.49347 -10.40732 -10.02490 -9.78036 -9.71727 -9.55495 -8.46353 -5.95416 0.28473 0.53492 1.03703 1.40342 1.42559 1.53512 1.71860 2.02060 2.27400 2.64424 2.89193 3.20148 3.31614 3.43937 3.69564 3.76140 4.04601 4.13825 4.20427 4.21151 4.22452 4.27961 4.31063 4.34322 4.35999 4.44605 4.63698 4.64798 4.66319 4.77579 4.93863 4.96937 5.08849 5.21317 5.26058 5.29074 5.40702 5.49134 5.57478 5.66190 5.76551 6.00038 6.11337 6.16494 6.57878 6.64210 7.11447 7.53577 8.07902 8.70916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.003430 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.905885 B = 8160.227107 C = 8607.785443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.173 3.827 4 N -0.645 5.645 5 C 0.059 3.941 6 C 0.446 3.554 7 O -0.614 6.614 8 N -0.571 5.571 9 C -0.333 4.333 10 H 0.082 0.918 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.994 3.006 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.272 1.272 17 C 0.479 3.521 18 O -0.526 6.526 19 O -0.349 6.349 20 C 0.023 3.977 21 C -0.099 4.099 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.097 4.097 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.361 0.639 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.395 0.605 36 H 0.278 0.722 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -1.015 -20.862 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.080 3.920 4 N -0.281 5.281 5 C -0.073 4.073 6 C 0.233 3.767 7 O -0.500 6.500 8 N -0.208 5.208 9 C -0.462 4.462 10 H 0.100 0.900 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.817 3.183 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.197 1.197 17 C 0.322 3.678 18 O -0.414 6.414 19 O -0.264 6.264 20 C -0.070 4.070 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.116 4.116 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.228 0.772 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.688 -0.250 -20.883 20.896 hybrid contribution 0.015 -0.867 1.248 1.520 sum 0.703 -1.117 -19.634 19.679 Atomic orbital electron populations 1.21826 0.93029 1.03452 1.02389 1.22168 0.98097 0.93643 1.04318 1.19623 0.86337 0.94865 0.91143 1.60212 1.18240 1.51355 0.98271 1.21593 1.00821 0.96321 0.88569 1.20428 0.84730 0.86904 0.84625 1.90496 1.43355 1.29723 1.86406 1.41889 1.46437 1.27955 1.04517 1.19657 1.30555 1.11103 0.84912 0.89979 1.26052 0.96693 0.97190 1.01274 1.69678 1.37189 1.24222 1.25125 0.84980 0.78618 0.78108 0.76589 1.19519 1.19627 1.19680 1.23715 0.91386 0.79669 0.72989 1.90618 1.70469 1.35875 1.44484 1.86684 1.23099 1.42740 1.73860 1.23570 0.75380 1.04895 1.03147 1.19263 1.03313 0.94293 0.93109 1.21283 0.98601 1.00651 0.92181 1.21425 0.99361 0.95065 0.98528 1.21572 0.98288 0.94521 0.98432 1.21443 0.99620 1.01063 0.92848 1.21230 0.97246 0.93890 0.99206 0.90139 0.93720 0.90957 0.88841 0.91313 0.81574 0.91066 0.89489 0.77188 0.91301 0.91980 0.91266 0.85896 0.84756 0.83224 0.83307 0.84418 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.25 71.98 0.67 -2.48 16 2 C -0.14 -3.43 3.64 30.59 0.11 -3.32 16 3 C 0.17 4.81 0.52 2.03 0.00 4.81 16 4 N -0.65 -21.20 4.27 -481.61 -2.05 -23.26 16 5 C 0.06 2.16 5.43 85.56 0.46 2.62 16 6 C 0.45 21.39 7.82 87.66 0.69 22.07 16 7 O -0.61 -33.57 15.78 -3.07 -0.05 -33.62 16 8 N -0.57 -29.55 5.29 -306.99 -1.62 -31.17 16 9 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 10 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 11 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 12 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 13 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 C 0.48 14.85 5.51 71.24 0.39 15.24 16 18 O -0.53 -17.20 15.84 21.97 0.35 -16.85 16 19 O -0.35 -10.90 9.63 -51.35 -0.49 -11.39 16 20 C 0.02 0.54 10.56 113.37 1.20 1.74 16 21 C -0.10 -2.49 3.98 -19.87 -0.08 -2.57 16 22 C -0.11 -2.23 7.79 22.27 0.17 -2.06 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 24 C -0.11 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 26 C -0.10 -2.51 9.31 22.27 0.21 -2.31 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.08 6.76 -2.38 -0.02 1.06 16 29 H 0.07 1.41 6.19 -2.39 -0.01 1.40 16 30 H 0.09 2.05 6.24 -2.39 -0.01 2.03 16 31 H 0.07 1.75 6.40 -2.39 -0.02 1.74 16 32 H 0.36 12.09 6.72 -89.69 -0.60 11.48 16 33 H 0.07 2.32 6.30 -2.39 -0.02 2.30 16 34 H 0.09 3.15 6.64 -2.39 -0.02 3.14 16 35 H 0.39 19.63 7.90 -92.71 -0.73 18.90 16 36 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.06 1.44 8.13 -2.39 -0.02 1.43 16 38 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 39 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.13 2.45 6.17 -2.91 -0.02 2.43 16 41 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.14 2.31 8.06 -2.90 -0.02 2.28 16 44 H 0.12 3.65 7.40 -2.91 -0.02 3.62 16 Total: -1.00 -69.08 362.79 3.92 -65.15 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.28 Total: 46.35 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.77 Total: 9.59 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -3.40 Total: -104.09 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.19 Total: -61.86 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.08 3.92 -65.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352833658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.954 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds