Wall clock time and date at job start Fri Apr 10 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 O 1.42909 * 109.47187 * 119.99212 * 2 1 3 5 5 C 1.42903 * 113.99516 * 90.00246 * 4 2 1 6 6 H 1.09002 * 109.47382 * 30.00095 * 5 4 2 7 7 C 1.50699 * 109.47184 * 270.00097 * 5 4 2 8 8 O 1.21286 * 119.99722 * 355.00184 * 7 5 4 9 9 N 1.34777 * 120.00178 * 175.00129 * 7 5 4 10 10 C 1.46500 * 120.00097 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47147 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99642 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99929 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99527 * 180.02562 * 14 13 11 17 17 N 1.31417 * 119.99422 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00578 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47190 * 90.00083 * 18 16 14 20 20 H 1.48497 * 109.47223 * 209.99933 * 18 16 14 21 21 H 1.48501 * 109.46989 * 330.00213 * 18 16 14 22 22 C 1.50701 * 109.46878 * 150.00028 * 5 4 2 23 23 C 1.38242 * 119.99675 * 39.72817 * 22 5 4 24 24 C 1.38235 * 119.99458 * 179.81160 * 23 22 5 25 25 C 1.38236 * 120.00304 * 0.38687 * 24 23 22 26 26 C 1.38242 * 119.99796 * 359.86995 * 25 24 23 27 27 C 1.38230 * 119.99958 * 359.94576 * 26 25 24 28 28 H 1.08997 * 109.47242 * 60.00508 * 1 2 3 29 29 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47303 * 300.00384 * 1 2 3 31 31 H 1.08997 * 109.47303 * 239.99616 * 2 1 3 32 32 H 1.08998 * 109.47299 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46492 * 299.99447 * 3 2 1 34 34 H 1.08997 * 109.47348 * 59.99644 * 3 2 1 35 35 H 0.97004 * 119.99587 * 0.02562 * 9 7 5 36 36 H 1.09000 * 109.47100 * 300.00155 * 10 9 7 37 37 H 1.08996 * 109.46855 * 60.00139 * 10 9 7 38 38 H 0.97006 * 120.00017 * 359.97438 * 13 11 10 39 39 H 0.97001 * 119.99819 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.00052 * 359.97438 * 23 22 5 41 41 H 1.08000 * 119.99878 * 180.22948 * 24 23 22 42 42 H 1.08004 * 120.00024 * 179.83199 * 25 24 23 43 43 H 1.08000 * 119.99869 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.99817 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 -2.0781 0.9888 6 1 2.4629 -2.2799 -0.0496 7 6 0.9287 -2.8087 1.3364 8 8 -0.0177 -2.1982 1.7867 9 7 0.8432 -4.1403 1.1467 10 6 -0.3926 -4.8505 1.4851 11 6 -0.2282 -6.3175 1.1814 12 8 0.8182 -6.7290 0.7266 13 7 -1.2441 -7.1718 1.4142 14 6 -1.0947 -8.5062 1.1374 15 1 -0.1631 -8.8727 0.7324 16 6 -2.1424 -9.3870 1.3770 17 7 -1.9993 -10.6660 1.1112 18 14 -3.7541 -8.7531 2.0768 19 1 -4.6598 -8.3689 0.9644 20 1 -4.3936 -9.8182 2.8902 21 1 -3.4904 -7.5681 2.9320 22 6 3.3127 -2.5498 1.8892 23 6 3.4226 -2.0485 3.1729 24 6 4.4409 -2.4841 4.0001 25 6 5.3540 -3.4150 3.5410 26 6 5.2472 -3.9122 2.2556 27 6 4.2267 -3.4795 1.4297 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6003 -4.6285 0.7869 36 1 -0.6071 -4.7213 2.5460 37 1 -1.2163 -4.4473 0.8961 38 1 -2.0811 -6.8426 1.7776 39 1 -2.7306 -11.2809 1.2787 40 1 2.7114 -1.3186 3.5302 41 1 4.5246 -2.0953 5.0042 42 1 6.1511 -3.7533 4.1864 43 1 5.9608 -4.6392 1.8968 44 1 4.1430 -3.8683 0.4256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354377521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:57 Heat of formation + Delta-G solvation = -114.115969 kcal Electronic energy + Delta-G solvation = -26892.869295 eV Core-core repulsion = 23002.430651 eV Total energy + Delta-G solvation = -3890.438644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60898 -40.44580 -39.63690 -38.73557 -36.29846 -35.37488 -34.37442 -33.83993 -32.30536 -31.76583 -29.89592 -28.17395 -27.59839 -25.98155 -23.63211 -22.93424 -22.22998 -21.49693 -21.43183 -20.57088 -18.96973 -18.23917 -17.83920 -17.36926 -16.95162 -16.84874 -16.48424 -16.36918 -15.75055 -15.59007 -15.27546 -15.16266 -15.08450 -14.79087 -14.34347 -14.25560 -14.06927 -13.96750 -13.72861 -13.64605 -13.48543 -13.06170 -12.98589 -12.71180 -12.59332 -12.46132 -12.05446 -12.01946 -11.88065 -11.70673 -11.59338 -11.46977 -10.68299 -10.53697 -10.34729 -10.20079 -9.84003 -9.70146 -8.46703 -6.08478 0.29371 0.48488 1.29700 1.32369 1.42255 1.46001 1.77350 1.84095 2.19055 2.54720 2.80689 2.97085 3.09517 3.58341 3.69225 3.82047 3.98885 4.00144 4.12836 4.14582 4.18399 4.27808 4.29797 4.35905 4.37307 4.59725 4.64722 4.75809 4.83088 4.92252 4.96544 4.99543 5.13576 5.17656 5.29214 5.40909 5.47424 5.52464 5.55328 5.60199 5.87029 6.04312 6.08451 6.44734 6.47426 6.76921 7.07689 7.28014 7.76104 8.69708 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.003342 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.982579 B = 8375.252051 C = 9802.055517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.142 4.142 4 O -0.359 6.359 5 C 0.127 3.873 6 H 0.116 0.884 7 C 0.495 3.505 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.118 3.882 11 C 0.446 3.554 12 O -0.611 6.611 13 N -0.578 5.578 14 C -0.331 4.331 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.235 1.235 22 C -0.104 4.104 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.391 0.609 39 H 0.281 0.719 40 H 0.117 0.883 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 22.511 0.910 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 C -0.199 4.199 4 O -0.276 6.276 5 C 0.065 3.935 6 H 0.133 0.867 7 C 0.281 3.719 8 O -0.428 6.428 9 N -0.361 5.361 10 C -0.010 4.010 11 C 0.233 3.767 12 O -0.496 6.496 13 N -0.218 5.218 14 C -0.460 4.460 15 H 0.083 0.917 16 C -0.207 4.207 17 N -0.565 5.565 18 Si 0.777 3.223 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.158 1.158 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.130 4.130 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.250 0.750 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.423 22.569 1.093 24.482 hybrid contribution -0.922 -0.822 0.037 1.235 sum 8.502 21.748 1.130 23.378 Atomic orbital electron populations 1.22308 0.95938 1.02102 1.02189 1.22545 0.93978 0.95001 0.87231 1.21833 1.01848 0.92946 1.03260 1.88024 1.85553 1.16496 1.37570 1.20728 0.89372 0.82946 1.00447 0.86682 1.21553 0.90497 0.81778 0.78022 1.90676 1.39826 1.67261 1.45069 1.45722 1.16968 1.07757 1.65629 1.20883 0.89009 0.88053 1.03056 1.20442 0.84444 0.88540 0.83284 1.90525 1.29248 1.79297 1.50580 1.41933 1.14644 1.07075 1.58124 1.19034 1.01940 0.82477 1.42506 0.91703 1.26040 1.02627 0.94954 0.97057 1.69778 1.34973 1.03904 1.47825 0.85467 0.77532 0.79668 0.79604 1.18010 1.19798 1.15831 1.19429 0.96262 0.99634 0.95118 1.21081 0.98460 0.99124 0.93451 1.21431 0.94873 0.98005 1.00460 1.21571 0.99257 0.96289 0.96245 1.21452 0.98483 1.00093 0.94344 1.21247 0.94220 0.96391 1.01184 0.90306 0.93741 0.93150 0.90638 0.91589 0.89114 0.92465 0.74995 0.88345 0.87624 0.77309 0.90905 0.86528 0.84114 0.83556 0.83700 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 8.62 71.98 0.62 -3.05 16 2 C 0.07 1.36 3.34 30.59 0.10 1.46 16 3 C -0.14 -2.11 9.56 71.98 0.69 -1.42 16 4 O -0.36 -8.90 8.59 -129.99 -1.12 -10.02 16 5 C 0.13 3.05 2.72 29.10 0.08 3.13 16 6 H 0.12 2.19 7.23 -2.39 -0.02 2.17 16 7 C 0.50 14.74 6.51 87.66 0.57 15.31 16 8 O -0.55 -19.11 14.05 15.94 0.22 -18.89 16 9 N -0.70 -21.86 5.48 -466.78 -2.56 -24.41 16 10 C 0.12 3.89 6.15 85.63 0.53 4.42 16 11 C 0.45 19.33 7.85 87.66 0.69 20.02 16 12 O -0.61 -31.04 15.24 -3.07 -0.05 -31.09 16 13 N -0.58 -26.48 5.09 -306.99 -1.56 -28.05 16 14 C -0.33 -18.66 10.16 84.04 0.85 -17.80 16 15 H 0.06 4.31 7.39 -2.92 -0.02 4.29 16 16 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 17 N -0.93 -54.09 13.96 21.67 0.30 -53.79 16 18 Si 0.96 38.04 27.74 68.60 1.90 39.95 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 22 C -0.10 -2.49 4.92 -19.86 -0.10 -2.58 16 23 C -0.10 -2.51 9.35 22.27 0.21 -2.30 16 24 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 25 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 26 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 27 C -0.11 -2.39 9.67 22.27 0.22 -2.18 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.18 5.87 -2.39 -0.01 1.16 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.22 7.37 -2.39 -0.02 1.20 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.41 12.84 7.44 -92.71 -0.69 12.15 16 36 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.39 15.13 5.76 -92.70 -0.53 14.59 16 39 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.12 3.02 7.77 -2.91 -0.02 3.00 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.14 2.46 8.04 -2.91 -0.02 2.44 16 Total: -1.00 -73.72 371.72 2.48 -71.23 By element: Atomic # 1 Polarization: 46.80 SS G_CDS: -0.25 Total: 46.55 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.59 Total: 8.52 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.82 Total: -106.25 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.94 Total: -60.00 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.95 kcal Total: -73.72 2.48 -71.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354377521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.883 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds