Wall clock time and date at job start Fri Apr 10 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99850 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46961 * 89.99990 * 8 6 4 10 10 H 1.48497 * 109.47146 * 209.99690 * 8 6 4 11 11 H 1.48495 * 109.47296 * 330.00194 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 17 17 C 1.52999 * 109.46969 * 299.99631 * 15 13 12 18 18 N 1.46507 * 109.47005 * 180.02562 * 15 13 12 19 19 C 1.34767 * 119.99839 * 205.00217 * 18 15 13 20 20 O 1.21282 * 120.00422 * 359.97438 * 19 18 15 21 21 C 1.50708 * 120.00065 * 179.97438 * 19 18 15 22 22 O 1.42895 * 109.47333 * 179.97438 * 21 19 18 23 23 C 1.35898 * 116.99985 * 179.97438 * 22 21 19 24 24 C 1.38732 * 120.05612 * 359.72742 * 23 22 21 25 25 C 1.38149 * 119.94576 * 179.74242 * 24 23 22 26 26 C 1.38264 * 120.05446 * 0.50962 * 25 24 23 27 27 C 1.38272 * 120.10915 * 359.77156 * 26 25 24 28 28 C 1.38140 * 120.05779 * 359.97051 * 27 26 25 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 33 33 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 34 34 H 1.09003 * 109.47126 * 180.02562 * 17 15 13 35 35 H 1.09001 * 109.47339 * 300.00351 * 17 15 13 36 36 H 1.08996 * 109.47277 * 60.00292 * 17 15 13 37 37 H 0.96995 * 119.99549 * 24.99018 * 18 15 13 38 38 H 1.08998 * 109.46979 * 300.00142 * 21 19 18 39 39 H 1.09001 * 109.46567 * 59.99252 * 21 19 18 40 40 H 1.08003 * 120.02861 * 359.97438 * 24 23 22 41 41 H 1.07990 * 119.97251 * 180.27760 * 25 24 23 42 42 H 1.08000 * 119.94705 * 179.74270 * 26 25 24 43 43 H 1.08003 * 119.97059 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.03097 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8591 1.1586 -2.4115 15 6 2.6552 -0.7272 -3.5860 16 1 1.9867 -1.5521 -3.8322 17 6 4.0594 -1.2718 -3.3166 18 7 2.7040 0.2140 -4.7077 19 6 2.6297 -0.2421 -5.9737 20 8 2.5230 -1.4317 -6.1845 21 6 2.6793 0.7261 -7.1276 22 8 2.5842 0.0059 -8.3581 23 6 2.6134 0.7359 -9.5040 24 6 2.7253 2.1175 -9.4451 25 6 2.7601 2.8569 -10.6115 26 6 2.6728 2.2220 -11.8367 27 6 2.5553 0.8457 -11.8979 28 6 2.5254 0.1014 -10.7346 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7094 1.1617 3.4844 33 1 2.2490 -1.6319 -1.1526 34 1 4.4272 -1.7843 -4.2056 35 1 4.7280 -0.4469 -3.0704 36 1 4.0236 -1.9719 -2.4820 37 1 2.7895 1.1653 -4.5391 38 1 1.8473 1.4260 -7.0506 39 1 3.6201 1.2758 -7.1003 40 1 2.7891 2.6143 -8.4882 41 1 2.8518 3.9319 -10.5663 42 1 2.6960 2.8021 -12.7474 43 1 2.4877 0.3521 -12.8562 44 1 2.4332 -0.9736 -10.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356429257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:16 Heat of formation + Delta-G solvation = -87.445377 kcal Electronic energy + Delta-G solvation = -25755.554413 eV Core-core repulsion = 21866.272292 eV Total energy + Delta-G solvation = -3889.282120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70310 -39.91640 -38.78298 -37.46655 -35.25723 -34.60897 -32.64118 -31.61161 -31.16860 -30.30230 -28.80352 -27.96118 -25.33754 -24.42199 -23.05191 -22.48071 -21.22842 -20.43220 -19.56359 -18.70783 -18.16265 -16.76183 -16.61827 -16.55666 -16.10510 -15.74958 -15.46284 -15.14405 -14.79651 -14.64148 -14.40378 -14.13656 -13.74787 -13.61889 -13.28093 -12.99543 -12.91396 -12.60066 -12.32557 -12.24282 -11.92980 -11.84136 -11.52201 -11.38461 -11.22989 -11.14822 -11.02579 -10.82414 -10.37320 -10.29700 -10.01065 -9.44167 -9.34428 -9.13605 -9.04181 -8.62059 -8.54116 -8.06090 -6.18580 -4.28221 0.99935 1.11402 2.27132 2.40172 3.15027 3.20980 3.28012 3.29711 3.39829 3.46187 3.95261 4.31125 4.34430 4.51735 4.59527 4.67576 4.73719 4.81638 5.04483 5.11103 5.13831 5.14867 5.15020 5.28339 5.30382 5.64158 5.66859 5.80426 5.95924 6.06580 6.15160 6.20013 6.26359 6.41074 6.74532 6.87830 7.02766 7.06326 7.29974 7.37151 7.45105 7.61310 7.81943 8.02781 8.06999 8.50892 8.67254 8.93408 9.39199 10.87358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037142 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.673989 B =14268.355288 C =14636.339474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.500 3.500 14 O -0.554 6.554 15 C 0.123 3.877 16 H 0.111 0.889 17 C -0.158 4.158 18 N -0.704 5.704 19 C 0.519 3.481 20 O -0.521 6.521 21 C 0.042 3.958 22 O -0.289 6.289 23 C 0.130 3.870 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.161 4.161 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.392 0.608 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 1.526 -23.626 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.433 6.433 15 C 0.015 3.985 16 H 0.129 0.871 17 C -0.216 4.216 18 N -0.359 5.359 19 C 0.303 3.697 20 O -0.396 6.396 21 C -0.036 4.036 22 O -0.201 6.201 23 C 0.085 3.915 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.168 4.168 29 H 0.110 0.890 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.546 1.413 -23.584 24.060 hybrid contribution 0.410 -0.129 1.122 1.201 sum 4.956 1.284 -22.462 23.038 Atomic orbital electron populations 1.22089 0.98317 0.99280 1.00976 1.18802 0.91125 0.93991 0.79780 0.93231 1.21197 1.32616 1.13326 0.90212 0.91960 1.24892 0.94738 0.94961 0.99111 1.69895 1.35720 1.22423 1.23984 0.86426 0.78592 0.79861 0.82094 1.20545 1.21054 1.19803 1.46506 1.64228 1.13747 1.10175 1.20301 0.78968 0.87605 0.84835 1.90647 1.51884 1.15923 1.84849 1.20885 0.99339 0.92687 0.85562 0.87135 1.22109 0.94839 1.01778 1.02896 1.45554 1.74445 1.11812 1.04104 1.19913 0.77061 0.89245 0.83464 1.90749 1.47886 1.16328 1.84622 1.22454 1.04084 0.94370 0.82738 1.86152 1.88006 1.34454 1.11509 1.19097 0.95987 0.90143 0.86286 1.21324 1.08853 0.92821 1.00012 1.20970 0.97079 0.99834 0.91896 1.21089 1.04225 0.94762 0.97852 1.20989 0.97443 0.93920 0.97548 1.20488 1.05916 1.00904 0.89499 0.89028 0.96654 0.95335 0.92511 0.77556 0.91293 0.91698 0.90497 0.75159 0.88598 0.88729 0.85269 0.85689 0.85913 0.85307 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.15 0.34 -3.24 16 2 C 0.26 6.45 2.56 -69.09 -0.18 6.28 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.70 -13.67 4.96 -54.93 -0.27 -13.94 16 13 C 0.50 9.17 7.19 -10.98 -0.08 9.09 16 14 O -0.55 -11.91 15.50 5.56 0.09 -11.83 16 15 C 0.12 1.77 2.99 -69.08 -0.21 1.57 16 16 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 17 C -0.16 -1.95 9.38 37.16 0.35 -1.60 16 18 N -0.70 -9.07 4.95 -54.93 -0.27 -9.35 16 19 C 0.52 6.84 7.87 -10.99 -0.09 6.75 16 20 O -0.52 -8.81 16.16 -14.35 -0.23 -9.04 16 21 C 0.04 0.42 5.22 36.01 0.19 0.61 16 22 O -0.29 -3.56 9.67 -39.33 -0.38 -3.94 16 23 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 24 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 25 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16 26 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 27 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 28 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.39 6.62 7.97 -40.82 -0.33 6.30 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 37 H 0.41 4.86 7.79 -40.82 -0.32 4.55 16 38 H 0.10 0.76 7.65 -51.93 -0.40 0.37 16 39 H 0.09 0.68 7.68 -51.93 -0.40 0.29 16 40 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -32.51 374.77 -8.27 -40.78 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.19 Total: 9.55 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.27 Total: 0.61 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.08 Total: -46.93 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.53 Total: -24.81 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.51 -8.27 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356429257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.663 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds