Wall clock time and date at job start Fri Apr 10 2020 18:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99850 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46961 * 89.99990 * 8 6 4 10 10 H 1.48497 * 109.47146 * 209.99690 * 8 6 4 11 11 H 1.48495 * 109.47296 * 330.00194 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 17 17 C 1.52999 * 109.46969 * 299.99631 * 15 13 12 18 18 N 1.46507 * 109.47005 * 180.02562 * 15 13 12 19 19 C 1.34767 * 119.99839 * 205.00217 * 18 15 13 20 20 O 1.21282 * 120.00422 * 359.97438 * 19 18 15 21 21 C 1.50708 * 120.00065 * 179.97438 * 19 18 15 22 22 O 1.42895 * 109.47333 * 179.97438 * 21 19 18 23 23 C 1.35898 * 116.99985 * 179.97438 * 22 21 19 24 24 C 1.38732 * 120.05612 * 359.72742 * 23 22 21 25 25 C 1.38149 * 119.94576 * 179.74242 * 24 23 22 26 26 C 1.38264 * 120.05446 * 0.50962 * 25 24 23 27 27 C 1.38272 * 120.10915 * 359.77156 * 26 25 24 28 28 C 1.38140 * 120.05779 * 359.97051 * 27 26 25 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 33 33 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 34 34 H 1.09003 * 109.47126 * 180.02562 * 17 15 13 35 35 H 1.09001 * 109.47339 * 300.00351 * 17 15 13 36 36 H 1.08996 * 109.47277 * 60.00292 * 17 15 13 37 37 H 0.96995 * 119.99549 * 24.99018 * 18 15 13 38 38 H 1.08998 * 109.46979 * 300.00142 * 21 19 18 39 39 H 1.09001 * 109.46567 * 59.99252 * 21 19 18 40 40 H 1.08003 * 120.02861 * 359.97438 * 24 23 22 41 41 H 1.07990 * 119.97251 * 180.27760 * 25 24 23 42 42 H 1.08000 * 119.94705 * 179.74270 * 26 25 24 43 43 H 1.08003 * 119.97059 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.03097 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8591 1.1586 -2.4115 15 6 2.6552 -0.7272 -3.5860 16 1 1.9867 -1.5521 -3.8322 17 6 4.0594 -1.2718 -3.3166 18 7 2.7040 0.2140 -4.7077 19 6 2.6297 -0.2421 -5.9737 20 8 2.5230 -1.4317 -6.1845 21 6 2.6793 0.7261 -7.1276 22 8 2.5842 0.0059 -8.3581 23 6 2.6134 0.7359 -9.5040 24 6 2.7253 2.1175 -9.4451 25 6 2.7601 2.8569 -10.6115 26 6 2.6728 2.2220 -11.8367 27 6 2.5553 0.8457 -11.8979 28 6 2.5254 0.1014 -10.7346 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7094 1.1617 3.4844 33 1 2.2490 -1.6319 -1.1526 34 1 4.4272 -1.7843 -4.2056 35 1 4.7280 -0.4469 -3.0704 36 1 4.0236 -1.9719 -2.4820 37 1 2.7895 1.1653 -4.5391 38 1 1.8473 1.4260 -7.0506 39 1 3.6201 1.2758 -7.1003 40 1 2.7891 2.6143 -8.4882 41 1 2.8518 3.9319 -10.5663 42 1 2.6960 2.8021 -12.7474 43 1 2.4877 0.3521 -12.8562 44 1 2.4332 -0.9736 -10.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356429257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:15 Heat of formation + Delta-G solvation = -108.859822 kcal Electronic energy + Delta-G solvation = -25756.483013 eV Core-core repulsion = 21866.272292 eV Total energy + Delta-G solvation = -3890.210720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65099 -40.99659 -40.04910 -38.21322 -36.89818 -36.00024 -34.42970 -32.67650 -31.94811 -31.08736 -30.39903 -28.85143 -27.34507 -25.66459 -23.77522 -23.28334 -22.68721 -21.55277 -21.16675 -19.53230 -19.38844 -18.20862 -17.67742 -17.44719 -17.12852 -17.02770 -16.75232 -16.45745 -16.19345 -15.64083 -15.38503 -15.25046 -14.91748 -14.70219 -14.47126 -14.31764 -13.88649 -13.69648 -13.65137 -13.47562 -13.31546 -12.98838 -12.90001 -12.75942 -12.63977 -12.47156 -12.26629 -12.13414 -12.10831 -11.83784 -11.12796 -11.08698 -10.85151 -10.59479 -10.32118 -9.94325 -9.81219 -9.20341 -8.17617 -6.34456 0.40261 0.48300 1.32295 1.40040 1.46091 1.46987 1.57045 1.65557 2.30011 2.47710 2.69172 2.85414 3.13416 3.45306 3.74696 3.88229 3.98502 4.00483 4.04321 4.05883 4.11987 4.30937 4.48182 4.54405 4.61693 4.71907 4.73782 4.77915 4.91065 5.08394 5.10110 5.14692 5.17638 5.34678 5.41711 5.48977 5.57831 5.61794 5.66772 5.82559 5.87103 6.08773 6.27274 6.41989 6.72278 6.82985 7.01736 7.29072 7.44351 8.88496 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037142 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.673989 B =14268.355288 C =14636.339474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.006 0.994 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.696 5.696 13 C 0.501 3.499 14 O -0.586 6.586 15 C 0.134 3.866 16 H 0.113 0.887 17 C -0.151 4.151 18 N -0.700 5.700 19 C 0.520 3.480 20 O -0.562 6.562 21 C 0.045 3.955 22 O -0.318 6.318 23 C 0.105 3.895 24 C -0.218 4.218 25 C -0.085 4.085 26 C -0.162 4.162 27 C -0.083 4.083 28 C -0.171 4.171 29 H 0.067 0.933 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 1.422 -24.712 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.286 3.714 14 O -0.468 6.468 15 C 0.026 3.974 16 H 0.131 0.869 17 C -0.209 4.209 18 N -0.355 5.355 19 C 0.307 3.693 20 O -0.440 6.440 21 C -0.033 4.033 22 O -0.232 6.232 23 C 0.060 3.940 24 C -0.236 4.236 25 C -0.103 4.103 26 C -0.180 4.180 27 C -0.101 4.101 28 C -0.190 4.190 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.580 1.301 -24.698 25.354 hybrid contribution 0.078 -0.029 1.364 1.366 sum 5.658 1.272 -23.335 24.044 Atomic orbital electron populations 1.21924 0.98381 0.99484 0.99703 1.18389 0.91025 0.92177 0.81600 0.97636 1.21536 1.32553 1.13606 0.90668 0.90697 1.25767 0.94886 0.95603 1.02260 1.70039 1.36921 1.23894 1.24598 0.85363 0.77747 0.79195 0.78138 1.20334 1.21183 1.18497 1.46224 1.64456 1.14384 1.09415 1.20923 0.77806 0.87197 0.85427 1.90631 1.53040 1.17606 1.85478 1.20746 1.00439 0.92310 0.83901 0.86948 1.22081 0.93215 1.01999 1.03628 1.45544 1.74140 1.11934 1.03860 1.20465 0.75682 0.89221 0.83962 1.90728 1.49866 1.18239 1.85157 1.22542 1.06493 0.93351 0.80908 1.86091 1.88705 1.35907 1.12462 1.19348 0.97704 0.91068 0.85891 1.21568 1.08530 0.92127 1.01378 1.21344 0.96239 1.01102 0.91631 1.21474 1.02903 0.94767 0.98877 1.21297 0.96636 0.94386 0.97805 1.20698 1.06958 1.01111 0.90209 0.91394 0.96777 0.94221 0.92569 0.75786 0.90648 0.91517 0.89421 0.74402 0.86511 0.85768 0.83643 0.83336 0.83443 0.83103 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.27 13.41 2.56 44.24 0.11 13.53 16 3 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 4 C -0.55 -27.72 8.73 25.60 0.22 -27.49 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.02 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -51.14 11.32 21.45 0.24 -50.90 16 8 Si 0.97 40.93 29.54 68.60 2.03 42.96 16 9 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 12 N -0.70 -26.96 4.96 -446.10 -2.21 -29.17 16 13 C 0.50 18.25 7.19 87.65 0.63 18.88 16 14 O -0.59 -25.46 15.50 -3.04 -0.05 -25.51 16 15 C 0.13 3.73 2.99 44.24 0.13 3.86 16 16 H 0.11 3.16 7.58 -2.39 -0.02 3.14 16 17 C -0.15 -3.49 9.38 71.98 0.68 -2.82 16 18 N -0.70 -17.38 4.95 -446.10 -2.21 -19.59 16 19 C 0.52 13.33 7.87 87.66 0.69 14.02 16 20 O -0.56 -18.96 16.16 16.00 0.26 -18.70 16 21 C 0.04 0.84 5.22 71.24 0.37 1.21 16 22 O -0.32 -7.80 9.67 -73.36 -0.71 -8.51 16 23 C 0.10 2.17 6.69 22.51 0.15 2.32 16 24 C -0.22 -3.43 9.04 22.37 0.20 -3.23 16 25 C -0.09 -1.10 10.04 22.25 0.22 -0.87 16 26 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 27 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 28 C -0.17 -3.26 9.99 22.37 0.22 -3.04 16 29 H 0.07 3.67 6.07 -2.38 -0.01 3.66 16 30 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.41 13.25 7.97 -92.70 -0.74 12.51 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.84 7.57 -2.39 -0.02 1.82 16 37 H 0.42 9.45 7.79 -92.71 -0.72 8.73 16 38 H 0.12 1.66 7.65 -2.39 -0.02 1.64 16 39 H 0.12 1.53 7.68 -2.39 -0.02 1.52 16 40 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 41 H 0.15 1.14 8.06 -2.92 -0.02 1.11 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -71.43 374.77 2.12 -69.31 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.43 Total: 31.22 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.20 Total: 8.89 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.18 Total: -99.66 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.50 Total: -52.72 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -71.43 2.12 -69.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356429257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.550 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds