Wall clock time and date at job start Fri Apr 10 2020 18:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47070 * 2 1 4 4 N 1.46507 * 109.46903 * 120.00105 * 2 1 3 5 5 C 1.34778 * 119.99557 * 274.99760 * 4 2 1 6 6 O 1.21276 * 120.00341 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99695 * 180.02562 * 5 4 2 8 8 O 1.42898 * 109.47165 * 179.97438 * 7 5 4 9 9 C 1.35900 * 117.00029 * 179.97438 * 8 7 5 10 10 C 1.38730 * 120.05309 * 180.02562 * 9 8 7 11 11 C 1.38155 * 119.94267 * 179.97438 * 10 9 8 12 12 C 1.38267 * 120.05169 * 359.97359 * 11 10 9 13 13 C 1.38263 * 120.11478 * 0.04970 * 12 11 10 14 14 C 1.38141 * 120.05506 * 359.94771 * 13 12 11 15 15 C 1.50698 * 109.46969 * 239.99737 * 2 1 3 16 16 O 1.21284 * 120.00209 * 245.87911 * 15 2 1 17 17 N 1.34777 * 119.99984 * 65.87463 * 15 2 1 18 18 C 1.46493 * 119.99848 * 4.64383 * 17 15 2 19 19 C 1.46497 * 119.99996 * 184.64745 * 17 15 2 20 20 C 1.50701 * 109.47584 * 89.99801 * 19 17 15 21 21 H 1.07999 * 119.99539 * 0.02562 * 20 19 17 22 22 C 1.37879 * 120.00227 * 179.97438 * 20 19 17 23 23 N 1.31513 * 119.99642 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00024 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46665 * 89.99973 * 24 22 20 26 26 H 1.48495 * 109.47061 * 209.99883 * 24 22 20 27 27 H 1.48498 * 109.47215 * 330.00113 * 24 22 20 28 28 H 1.08996 * 109.47067 * 189.36165 * 1 2 3 29 29 H 1.09008 * 109.46704 * 309.35661 * 1 2 3 30 30 H 1.08993 * 109.46659 * 69.35492 * 1 2 3 31 31 H 0.96991 * 119.99958 * 94.99318 * 4 2 1 32 32 H 1.09001 * 109.47174 * 59.99617 * 7 5 4 33 33 H 1.09000 * 109.46748 * 300.00002 * 7 5 4 34 34 H 1.07996 * 120.03241 * 359.69962 * 10 9 8 35 35 H 1.07998 * 119.96827 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.93757 * 179.97438 * 12 11 10 37 37 H 1.07995 * 119.97128 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.02939 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47032 * 95.81853 * 18 17 15 40 40 H 1.09000 * 109.47147 * 215.81298 * 18 17 15 41 41 H 1.08992 * 109.47761 * 335.81862 * 18 17 15 42 42 H 1.08996 * 109.47166 * 210.00195 * 19 17 15 43 43 H 1.09004 * 109.47418 * 329.99866 * 19 17 15 44 44 H 0.97006 * 119.99696 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8592 1.1586 2.4115 7 6 2.6499 -0.7285 3.5875 8 8 2.6985 0.1898 4.6813 9 6 3.1329 -0.2943 5.8745 10 6 3.2047 0.5422 6.9790 11 6 3.6462 0.0475 8.1910 12 6 4.0157 -1.2801 8.3039 13 6 3.9455 -2.1156 7.2045 14 6 3.5047 -1.6258 5.9903 15 6 2.0324 -0.7105 -1.2304 16 8 2.6392 -1.7550 -1.1223 17 7 1.8072 -0.1852 -2.4510 18 6 1.1645 1.1252 -2.5773 19 6 2.2050 -0.9246 -3.6515 20 6 1.0675 -1.8064 -4.0984 21 1 0.1408 -1.8147 -3.5440 22 6 1.2096 -2.6016 -5.2158 23 7 0.2167 -3.3706 -5.6061 24 14 2.8123 -2.5866 -6.1752 25 1 3.7264 -3.6211 -5.6280 26 1 2.5360 -2.8765 -7.6051 27 1 3.4487 -1.2502 -6.0550 28 1 -0.3633 -1.0139 0.1672 29 1 -0.3633 0.6518 0.7947 30 1 -0.3632 0.3623 -0.9616 31 1 2.2489 -1.6318 1.1527 32 1 3.6492 -1.1204 3.3979 33 1 1.9776 -1.5508 3.8325 34 1 2.9200 1.5801 6.8903 35 1 3.7018 0.6982 9.0512 36 1 4.3610 -1.6647 9.2522 37 1 4.2351 -3.1520 7.2951 38 1 3.4496 -2.2789 5.1319 39 1 1.9281 1.8953 -2.6869 40 1 0.5163 1.1291 -3.4535 41 1 0.5712 1.3264 -1.6854 42 1 2.4532 -0.2210 -4.4460 43 1 3.0757 -1.5408 -3.4268 44 1 0.3168 -3.9304 -6.3920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356455275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:25 Heat of formation + Delta-G solvation = -65.265209 kcal Electronic energy + Delta-G solvation = -26063.678019 eV Core-core repulsion = 22175.357703 eV Total energy + Delta-G solvation = -3888.320316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72242 -40.02434 -38.90196 -37.46752 -35.27112 -34.89491 -32.70010 -31.63655 -31.18803 -30.30212 -28.56618 -27.90221 -26.29460 -24.26086 -23.10414 -22.60355 -21.92811 -20.50338 -19.05214 -18.70822 -17.57819 -17.03219 -16.72887 -16.58801 -16.23442 -15.93912 -15.63639 -15.08731 -14.81175 -14.62323 -14.55390 -14.17697 -13.88461 -13.73448 -13.36040 -13.08330 -12.91778 -12.79153 -12.49837 -12.35281 -12.18868 -11.92749 -11.77021 -11.54603 -11.38952 -11.36453 -11.22827 -10.93765 -10.59766 -10.21563 -10.01164 -9.63058 -9.42131 -9.34186 -9.06019 -8.66273 -8.53972 -7.85933 -6.16153 -4.15848 1.00149 1.11602 2.26597 2.39478 3.07280 3.23979 3.29810 3.31785 3.37104 3.46386 3.77465 4.33021 4.34535 4.51791 4.59325 4.67876 4.73581 4.76734 4.81983 5.04721 5.12836 5.15004 5.17004 5.20079 5.30416 5.43705 5.66970 5.67154 5.78451 5.81052 5.96104 6.06529 6.06886 6.20231 6.23680 6.29702 6.41002 6.59430 6.84083 7.02729 7.15866 7.37109 7.51616 7.97289 8.09359 8.36765 8.69448 8.86529 9.43466 10.96842 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.002218 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.323492 B =12618.897593 C =13188.519665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 H 0.110 0.890 4 N -0.705 5.705 5 C 0.520 3.480 6 O -0.521 6.521 7 C 0.042 3.958 8 O -0.289 6.289 9 C 0.130 3.870 10 C -0.149 4.149 11 C -0.081 4.081 12 C -0.161 4.161 13 C -0.080 4.080 14 C -0.211 4.211 15 C 0.507 3.493 16 O -0.541 6.541 17 N -0.588 5.588 18 C 0.064 3.936 19 C 0.214 3.786 20 C -0.532 4.532 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.412 0.588 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 6.571 23.156 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 H 0.127 0.873 4 N -0.360 5.360 5 C 0.304 3.696 6 O -0.396 6.396 7 C -0.037 4.037 8 O -0.201 6.201 9 C 0.085 3.915 10 C -0.168 4.168 11 C -0.099 4.099 12 C -0.179 4.179 13 C -0.098 4.098 14 C -0.230 4.230 15 C 0.292 3.708 16 O -0.419 6.419 17 N -0.319 5.319 18 C -0.079 4.079 19 C 0.094 3.906 20 C -0.570 4.570 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.191 1.191 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.297 6.944 23.003 24.605 hybrid contribution 0.830 -0.861 -0.801 1.439 sum 6.128 6.084 22.202 23.822 Atomic orbital electron populations 1.22320 0.92709 1.03646 1.03856 1.20820 0.95875 0.97762 0.83648 0.87273 1.45595 1.67127 1.15103 1.08211 1.19907 0.78422 0.87376 0.83893 1.90739 1.48853 1.15450 1.84606 1.22453 1.03254 0.92470 0.85488 1.86150 1.80887 1.37161 1.15920 1.19096 0.94508 0.92448 0.85473 1.20486 1.05081 1.00311 0.90931 1.20990 0.96759 0.95593 0.96571 1.21089 1.03697 0.94133 0.99008 1.20971 0.96936 0.99758 0.92100 1.21327 1.07032 0.94791 0.99851 1.20207 0.80431 0.85608 0.84548 1.90648 1.41765 1.23441 1.86034 1.47729 1.58528 1.19247 1.06439 1.22064 0.97905 0.84228 1.03747 1.19726 0.97242 0.92136 0.81485 1.21292 1.00354 1.23614 1.11771 0.90655 1.24856 0.96471 0.94703 0.96954 1.69892 1.31544 1.26337 1.25550 0.86842 0.84187 0.79183 0.79429 1.19901 1.21009 1.19055 0.91383 0.91145 0.89571 0.75025 0.88622 0.88644 0.84983 0.85309 0.85915 0.85680 0.85255 0.93135 0.90274 0.90620 0.94951 0.94337 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.96 37.16 0.33 -1.92 16 2 C 0.13 1.89 2.15 -69.07 -0.15 1.74 16 3 H 0.11 1.56 7.16 -51.93 -0.37 1.19 16 4 N -0.70 -9.38 4.98 -54.93 -0.27 -9.65 16 5 C 0.52 6.89 7.87 -10.99 -0.09 6.80 16 6 O -0.52 -8.73 16.16 -14.35 -0.23 -8.97 16 7 C 0.04 0.42 5.22 36.01 0.19 0.61 16 8 O -0.29 -3.56 9.67 -39.34 -0.38 -3.94 16 9 C 0.13 1.39 6.69 -39.22 -0.26 1.12 16 10 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 11 C -0.08 -0.63 10.04 -39.60 -0.40 -1.02 16 12 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 13 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 14 C -0.21 -1.87 9.04 -39.43 -0.36 -2.22 16 15 C 0.51 9.65 7.05 -10.99 -0.08 9.57 16 16 O -0.54 -12.04 15.37 5.55 0.09 -11.96 16 17 N -0.59 -11.51 2.86 -182.96 -0.52 -12.03 16 18 C 0.06 0.94 9.74 59.84 0.58 1.52 16 19 C 0.21 5.05 4.29 -5.20 -0.02 5.02 16 20 C -0.53 -14.70 9.94 -34.44 -0.34 -15.04 16 21 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 24 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.09 1.14 5.41 -51.93 -0.28 0.86 16 31 H 0.41 5.15 7.74 -40.82 -0.32 4.83 16 32 H 0.10 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.10 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 41 H 0.08 0.93 4.11 -51.93 -0.21 0.72 16 42 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 43 H 0.04 0.97 6.79 -51.93 -0.35 0.61 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -35.37 368.85 -7.54 -42.90 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.00 Total: 4.10 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.88 Total: 3.73 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.02 Total: -47.78 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.53 Total: -24.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.37 -7.54 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356455275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.362 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds