Wall clock time and date at job start Fri Apr 10 2020 18:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46871 * 2 1 4 4 H 1.09001 * 109.46975 * 304.99899 * 3 2 1 5 5 C 1.52998 * 109.46822 * 184.99977 * 3 2 1 6 6 O 1.42900 * 109.47290 * 304.99939 * 5 3 2 7 7 N 1.46493 * 109.46790 * 65.00008 * 3 2 1 8 8 C 1.34783 * 120.00128 * 204.99967 * 7 3 2 9 9 O 1.21280 * 119.99545 * 359.97438 * 8 7 3 10 10 C 1.50692 * 120.00091 * 180.02562 * 8 7 3 11 11 C 1.50709 * 109.47027 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.91404 * 269.71918 * 11 10 8 13 13 C 1.38054 * 120.08206 * 179.76491 * 12 11 10 14 14 C 1.39027 * 119.91518 * 0.53206 * 13 12 11 15 15 N 1.39536 * 120.08429 * 179.70136 * 14 13 12 16 16 C 1.34781 * 120.00077 * 213.41554 * 15 14 13 17 17 O 1.21742 * 119.99752 * 5.26949 * 16 15 14 18 18 C 1.46173 * 120.00096 * 185.27647 * 16 15 14 19 19 H 1.08007 * 119.99831 * 359.97438 * 18 16 15 20 20 C 1.40119 * 120.00308 * 179.97438 * 18 16 15 21 21 N 1.30637 * 119.99510 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00207 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46963 * 120.00176 * 22 20 18 25 25 H 1.48508 * 109.46808 * 240.00048 * 22 20 18 26 26 C 1.39028 * 119.83511 * 359.72428 * 14 13 12 27 27 C 1.38058 * 119.91250 * 359.97438 * 26 14 13 28 28 H 1.08993 * 109.47107 * 299.99694 * 1 2 3 29 29 H 1.09005 * 109.47195 * 60.00192 * 1 2 3 30 30 H 1.09004 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47155 * 240.00952 * 2 1 3 32 32 H 1.08994 * 109.47610 * 119.99837 * 2 1 3 33 33 H 1.09000 * 109.47151 * 65.00646 * 5 3 2 34 34 H 1.09007 * 109.46771 * 185.00321 * 5 3 2 35 35 H 0.96696 * 113.99664 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00254 * 25.00160 * 7 3 2 37 37 H 1.09008 * 109.47172 * 299.99576 * 10 8 7 38 38 H 1.08999 * 109.47752 * 59.99369 * 10 8 7 39 39 H 1.08003 * 119.95762 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.04474 * 180.25895 * 13 12 11 41 41 H 0.97004 * 120.00086 * 33.41010 * 15 14 13 42 42 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.04297 * 179.97438 * 26 14 13 44 44 H 1.08006 * 119.95667 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4444 -0.1257 6 8 4.1293 0.6405 0.9121 7 7 1.6523 2.0975 1.2518 8 6 1.5254 3.4384 1.2996 9 8 1.7326 4.1029 0.3064 10 6 1.1273 4.1121 2.5874 11 6 1.0574 5.6024 2.3741 12 6 2.1790 6.3832 2.5879 13 6 2.1202 7.7481 2.3889 14 6 0.9288 8.3390 1.9836 15 7 0.8638 9.7189 1.7874 16 6 -0.2760 10.3852 2.0586 17 8 -1.2167 9.8012 2.5645 18 6 -0.3825 11.8090 1.7452 19 1 0.4523 12.3271 1.2966 20 6 -1.5676 12.5016 2.0267 21 7 -2.5771 11.8749 2.5697 22 14 -1.7040 14.3209 1.6255 23 1 -0.4320 14.7910 1.0203 24 1 -2.8168 14.5340 0.6657 25 1 -1.9717 15.0837 2.8713 26 6 -0.1978 7.5516 1.7748 27 6 -0.1295 6.1866 1.9699 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.8498 1.0379 -1.0961 34 1 3.9354 2.4656 -0.0365 35 1 5.0951 0.5964 0.8941 36 1 1.4870 1.5660 2.0462 37 1 0.1512 3.7438 2.9035 38 1 1.8661 3.8899 3.3574 39 1 3.1030 5.9240 2.9070 40 1 2.9975 8.3566 2.5520 41 1 1.6389 10.1987 1.4558 42 1 -3.3976 12.3543 2.7643 43 1 -1.1251 8.0071 1.4604 44 1 -1.0044 5.5742 1.8083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357140829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:35 Heat of formation + Delta-G solvation = -112.751435 kcal Electronic energy + Delta-G solvation = -26005.147396 eV Core-core repulsion = 22114.767923 eV Total energy + Delta-G solvation = -3890.379473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.11626 -39.03136 -37.66423 -36.82606 -35.37882 -33.73409 -32.60627 -32.42297 -30.97890 -30.22722 -28.93397 -27.11777 -25.58252 -23.88158 -22.28382 -21.90981 -20.89468 -20.40568 -19.55244 -17.83925 -17.50727 -16.96804 -16.48924 -16.19694 -15.66504 -15.41165 -14.94507 -14.74693 -14.58408 -14.15901 -14.04400 -13.80961 -13.65063 -13.27993 -12.92506 -12.89898 -12.64496 -12.55317 -12.45522 -11.88366 -11.68295 -11.61826 -11.37895 -11.31570 -11.17788 -11.10352 -10.97549 -10.62490 -10.44388 -10.35558 -10.28274 -9.79385 -9.17925 -9.16147 -8.82711 -8.27727 -7.70363 -6.94508 -6.32398 -4.79111 2.00475 2.13358 2.70385 3.07212 3.14213 3.15807 3.20404 3.96410 4.01417 4.29260 4.38705 4.59824 4.67574 4.71381 4.80922 4.92367 5.04566 5.14299 5.16843 5.21275 5.34331 5.43511 5.54229 5.55674 5.61197 5.63773 5.64078 5.71583 5.81874 5.97183 6.05335 6.35260 6.37653 6.47061 6.68119 6.96123 7.18490 7.22406 7.25249 7.30887 7.45004 7.54184 7.79351 8.11730 8.24311 8.26933 8.87696 9.26846 10.42049 10.59784 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.002176 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.634805 B =12862.761725 C =13225.294506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.148 3.852 4 H 0.099 0.901 5 C 0.062 3.938 6 O -0.570 6.570 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.527 6.527 10 C -0.089 4.089 11 C -0.121 4.121 12 C -0.084 4.084 13 C -0.177 4.177 14 C 0.196 3.804 15 N -0.701 5.701 16 C 0.543 3.457 17 O -0.560 6.560 18 C -0.538 4.538 19 H 0.072 0.928 20 C 0.086 3.914 21 N -0.760 5.760 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.128 4.128 27 C -0.084 4.084 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.377 0.623 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.393 0.607 42 H 0.271 0.729 43 H 0.137 0.863 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.675 -22.101 -2.805 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C 0.042 3.958 4 H 0.117 0.883 5 C -0.017 4.017 6 O -0.375 6.375 7 N -0.378 5.378 8 C 0.299 3.701 9 O -0.402 6.402 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.103 4.103 13 C -0.199 4.199 14 C 0.097 3.903 15 N -0.344 5.344 16 C 0.350 3.650 17 O -0.442 6.442 18 C -0.574 4.574 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.388 5.388 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.149 4.149 27 C -0.103 4.103 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.224 0.776 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.154 0.846 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.253 -21.969 -2.969 24.023 hybrid contribution 0.923 0.978 -0.141 1.352 sum 10.176 -20.991 -3.110 23.534 Atomic orbital electron populations 1.21800 0.95335 1.01677 1.02363 1.21695 0.96148 0.95042 1.03407 1.21061 0.92170 0.93898 0.88620 0.88322 1.22670 0.94418 0.94627 0.89987 1.86439 1.25248 1.72225 1.53588 1.46029 1.71512 1.07030 1.13239 1.20901 0.76521 0.81642 0.90991 1.90728 1.48952 1.63919 1.36630 1.20516 1.03564 0.93645 0.95164 1.18902 0.94605 0.92477 1.06285 1.20478 0.96800 0.93136 0.99908 1.20786 0.97835 0.95154 1.06099 1.17981 0.93757 0.85015 0.93522 1.44160 1.17555 1.04203 1.68499 1.18383 0.80027 0.87988 0.78629 1.90634 1.37398 1.69575 1.46544 1.20902 1.00705 0.92729 1.43108 0.90975 1.25750 0.94917 0.99934 0.92913 1.70000 1.02675 1.36617 1.29509 0.86232 0.79100 0.82281 0.78711 1.18646 1.20004 1.20019 1.21255 0.99492 0.92472 1.01634 1.20718 0.96483 0.94524 0.98536 0.92429 0.92610 0.92565 0.90818 0.90580 0.93032 0.92904 0.77617 0.76536 0.88545 0.88626 0.87241 0.86701 0.77426 0.91828 0.84555 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.80 37.16 0.36 -0.68 16 2 C -0.13 -0.85 5.19 -26.73 -0.14 -0.99 16 3 C 0.15 1.30 2.37 -67.93 -0.16 1.14 16 4 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 5 C 0.06 0.51 6.85 37.16 0.25 0.76 16 6 O -0.57 -4.25 12.83 -35.23 -0.45 -4.70 16 7 N -0.72 -6.75 4.48 -53.81 -0.24 -6.99 16 8 C 0.51 6.53 7.79 -10.99 -0.09 6.45 16 9 O -0.53 -9.06 15.70 5.56 0.09 -8.97 16 10 C -0.09 -1.05 5.83 -29.03 -0.17 -1.22 16 11 C -0.12 -1.98 4.38 -104.55 -0.46 -2.44 16 12 C -0.08 -1.41 9.69 -39.62 -0.38 -1.79 16 13 C -0.18 -3.29 9.97 -39.36 -0.39 -3.69 16 14 C 0.20 4.34 6.28 -83.77 -0.53 3.81 16 15 N -0.70 -16.43 5.32 -11.19 -0.06 -16.49 16 16 C 0.54 15.39 7.47 -13.07 -0.10 15.29 16 17 O -0.56 -17.73 12.70 5.15 0.07 -17.66 16 18 C -0.54 -14.95 9.54 -35.69 -0.34 -15.29 16 19 H 0.07 1.83 7.85 -52.48 -0.41 1.41 16 20 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 21 N -0.76 -22.29 11.82 55.55 0.66 -21.64 16 22 Si 0.91 19.76 29.56 -169.99 -5.02 14.73 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.13 -2.88 8.65 -39.35 -0.34 -3.22 16 27 C -0.08 -1.57 9.69 -39.62 -0.38 -1.96 16 28 H 0.06 0.41 7.75 -51.93 -0.40 0.00 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.38 1.40 9.12 45.56 0.42 1.81 16 36 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 37 H 0.10 0.94 8.09 -51.92 -0.42 0.52 16 38 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.39 7.92 8.80 -40.82 -0.36 7.56 16 42 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 43 H 0.14 3.48 6.42 -52.49 -0.34 3.14 16 44 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -36.77 375.89 -7.85 -44.62 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.60 Total: 12.98 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.95 Total: -1.56 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.36 Total: -45.11 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.30 Total: -31.33 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.77 -7.85 -44.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357140829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.128 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds