Wall clock time and date at job start Fri Apr 10 2020 18:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46871 * 2 1 4 4 H 1.09001 * 109.46975 * 304.99899 * 3 2 1 5 5 C 1.52998 * 109.46822 * 184.99977 * 3 2 1 6 6 O 1.42900 * 109.47290 * 304.99939 * 5 3 2 7 7 N 1.46493 * 109.46790 * 65.00008 * 3 2 1 8 8 C 1.34783 * 120.00128 * 204.99967 * 7 3 2 9 9 O 1.21280 * 119.99545 * 359.97438 * 8 7 3 10 10 C 1.50692 * 120.00091 * 180.02562 * 8 7 3 11 11 C 1.50709 * 109.47027 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.91404 * 269.71918 * 11 10 8 13 13 C 1.38054 * 120.08206 * 179.76491 * 12 11 10 14 14 C 1.39027 * 119.91518 * 0.53206 * 13 12 11 15 15 N 1.39536 * 120.08429 * 179.70136 * 14 13 12 16 16 C 1.34781 * 120.00077 * 213.41554 * 15 14 13 17 17 O 1.21742 * 119.99752 * 5.26949 * 16 15 14 18 18 C 1.46173 * 120.00096 * 185.27647 * 16 15 14 19 19 H 1.08007 * 119.99831 * 359.97438 * 18 16 15 20 20 C 1.40119 * 120.00308 * 179.97438 * 18 16 15 21 21 N 1.30637 * 119.99510 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00207 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46963 * 120.00176 * 22 20 18 25 25 H 1.48508 * 109.46808 * 240.00048 * 22 20 18 26 26 C 1.39028 * 119.83511 * 359.72428 * 14 13 12 27 27 C 1.38058 * 119.91250 * 359.97438 * 26 14 13 28 28 H 1.08993 * 109.47107 * 299.99694 * 1 2 3 29 29 H 1.09005 * 109.47195 * 60.00192 * 1 2 3 30 30 H 1.09004 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47155 * 240.00952 * 2 1 3 32 32 H 1.08994 * 109.47610 * 119.99837 * 2 1 3 33 33 H 1.09000 * 109.47151 * 65.00646 * 5 3 2 34 34 H 1.09007 * 109.46771 * 185.00321 * 5 3 2 35 35 H 0.96696 * 113.99664 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00254 * 25.00160 * 7 3 2 37 37 H 1.09008 * 109.47172 * 299.99576 * 10 8 7 38 38 H 1.08999 * 109.47752 * 59.99369 * 10 8 7 39 39 H 1.08003 * 119.95762 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.04474 * 180.25895 * 13 12 11 41 41 H 0.97004 * 120.00086 * 33.41010 * 15 14 13 42 42 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.04297 * 179.97438 * 26 14 13 44 44 H 1.08006 * 119.95667 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4444 -0.1257 6 8 4.1293 0.6405 0.9121 7 7 1.6523 2.0975 1.2518 8 6 1.5254 3.4384 1.2996 9 8 1.7326 4.1029 0.3064 10 6 1.1273 4.1121 2.5874 11 6 1.0574 5.6024 2.3741 12 6 2.1790 6.3832 2.5879 13 6 2.1202 7.7481 2.3889 14 6 0.9288 8.3390 1.9836 15 7 0.8638 9.7189 1.7874 16 6 -0.2760 10.3852 2.0586 17 8 -1.2167 9.8012 2.5645 18 6 -0.3825 11.8090 1.7452 19 1 0.4523 12.3271 1.2966 20 6 -1.5676 12.5016 2.0267 21 7 -2.5771 11.8749 2.5697 22 14 -1.7040 14.3209 1.6255 23 1 -0.4320 14.7910 1.0203 24 1 -2.8168 14.5340 0.6657 25 1 -1.9717 15.0837 2.8713 26 6 -0.1978 7.5516 1.7748 27 6 -0.1295 6.1866 1.9699 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.8498 1.0379 -1.0961 34 1 3.9354 2.4656 -0.0365 35 1 5.0951 0.5964 0.8941 36 1 1.4870 1.5660 2.0462 37 1 0.1512 3.7438 2.9035 38 1 1.8661 3.8899 3.3574 39 1 3.1030 5.9240 2.9070 40 1 2.9975 8.3566 2.5520 41 1 1.6389 10.1987 1.4558 42 1 -3.3976 12.3543 2.7643 43 1 -1.1251 8.0071 1.4604 44 1 -1.0044 5.5742 1.8083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357140829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:34 Heat of formation + Delta-G solvation = -141.932945 kcal Electronic energy + Delta-G solvation = -26006.412802 eV Core-core repulsion = 22114.767923 eV Total energy + Delta-G solvation = -3891.644878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20954 -40.55203 -38.91213 -38.14517 -36.08729 -35.51730 -34.58148 -33.42770 -32.29280 -31.73913 -29.75985 -28.83088 -27.16466 -24.53725 -23.84490 -23.26314 -21.96958 -21.44929 -21.13974 -19.47643 -18.48974 -18.05635 -17.79704 -17.59194 -17.23504 -16.58105 -16.16852 -16.05194 -15.71537 -15.27191 -15.08242 -15.01180 -14.78702 -14.59886 -14.50008 -14.33901 -14.10451 -13.56631 -13.33577 -13.22062 -13.18573 -12.85162 -12.81802 -12.74164 -12.42552 -12.26721 -12.01824 -11.95300 -11.91351 -11.77169 -11.11780 -11.00918 -10.86261 -10.61172 -10.00874 -9.98268 -9.67689 -8.66163 -8.38417 -6.96281 0.50491 0.61571 1.38134 1.38500 1.56939 1.73683 2.19953 2.24213 2.40180 2.93082 3.02626 3.41688 3.57096 3.75483 3.82759 3.99854 4.05522 4.17210 4.20908 4.25909 4.43139 4.48443 4.53661 4.58212 4.67598 4.73932 4.78314 4.87222 4.94145 4.95608 5.12089 5.17543 5.22579 5.24079 5.42728 5.47207 5.54780 5.60612 5.73723 5.81136 5.99409 6.16272 6.43960 6.66077 6.76080 6.86826 7.33524 7.36932 8.34378 8.55713 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.002176 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.634805 B =12862.761725 C =13225.294506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.141 3.859 4 H 0.078 0.922 5 C 0.069 3.931 6 O -0.576 6.576 7 N -0.707 5.707 8 C 0.514 3.486 9 O -0.580 6.580 10 C -0.087 4.087 11 C -0.106 4.106 12 C -0.082 4.082 13 C -0.170 4.170 14 C 0.156 3.844 15 N -0.696 5.696 16 C 0.529 3.471 17 O -0.607 6.607 18 C -0.566 4.566 19 H 0.092 0.908 20 C 0.027 3.973 21 N -0.814 5.814 22 Si 1.004 2.996 23 H -0.246 1.246 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.159 4.159 27 C -0.092 4.092 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.394 0.606 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.406 0.594 42 H 0.278 0.722 43 H 0.090 0.910 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -23.690 -2.264 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.036 3.964 4 H 0.096 0.904 5 C -0.011 4.011 6 O -0.384 6.384 7 N -0.360 5.360 8 C 0.302 3.698 9 O -0.459 6.459 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.100 4.100 13 C -0.191 4.191 14 C 0.059 3.941 15 N -0.340 5.340 16 C 0.335 3.665 17 O -0.493 6.493 18 C -0.602 4.602 19 H 0.110 0.890 20 C -0.189 4.189 21 N -0.443 5.443 22 Si 0.822 3.178 23 H -0.169 1.169 24 H -0.193 1.193 25 H -0.191 1.191 26 C -0.180 4.180 27 C -0.111 4.111 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.244 0.756 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.241 0.759 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.544 -23.643 -2.417 26.422 hybrid contribution 0.314 1.219 -0.302 1.294 sum 11.858 -22.425 -2.720 25.512 Atomic orbital electron populations 1.21806 0.95408 1.02272 1.01720 1.21625 0.95939 0.93491 1.04153 1.21155 0.92875 0.94751 0.87585 0.90382 1.22505 0.93744 0.93704 0.91098 1.86389 1.26984 1.71755 1.53267 1.45883 1.69916 1.06070 1.14087 1.20983 0.75937 0.82441 0.90457 1.90728 1.51640 1.65178 1.38336 1.20612 1.06312 0.89991 0.95680 1.19390 0.93167 0.95316 1.02906 1.21012 0.98403 0.92311 0.98322 1.21089 0.96981 0.96485 1.04560 1.18256 0.95269 0.84257 0.96365 1.43722 1.16691 1.05089 1.68505 1.18764 0.80648 0.88743 0.78313 1.90587 1.39388 1.70614 1.48667 1.21439 1.02019 0.93002 1.43708 0.88999 1.27051 0.93925 1.05981 0.91906 1.70161 1.03702 1.39489 1.30937 0.84883 0.79768 0.74341 0.78775 1.16896 1.19274 1.19056 1.21073 0.98237 0.94463 1.04264 1.20924 0.98508 0.93081 0.98595 0.92699 0.93653 0.91370 0.89764 0.90041 0.91392 0.95154 0.75633 0.74873 0.86031 0.84937 0.83074 0.84227 0.75905 0.91214 0.89220 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.80 71.98 0.71 -1.10 16 2 C -0.11 -1.28 5.19 30.60 0.16 -1.12 16 3 C 0.14 2.25 2.37 44.99 0.11 2.36 16 4 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 5 C 0.07 1.00 6.85 71.98 0.49 1.49 16 6 O -0.58 -6.90 12.83 -148.98 -1.91 -8.81 16 7 N -0.71 -11.41 4.48 -442.54 -1.98 -13.39 16 8 C 0.51 11.99 7.79 87.65 0.68 12.67 16 9 O -0.58 -19.52 15.70 -3.03 -0.05 -19.57 16 10 C -0.09 -1.74 5.83 29.10 0.17 -1.57 16 11 C -0.11 -3.29 4.38 -19.82 -0.09 -3.38 16 12 C -0.08 -2.52 9.69 22.25 0.22 -2.30 16 13 C -0.17 -6.17 9.97 22.42 0.22 -5.95 16 14 C 0.16 7.15 6.28 38.29 0.24 7.39 16 15 N -0.70 -34.18 5.32 -307.52 -1.64 -35.81 16 16 C 0.53 31.66 7.47 86.30 0.65 32.31 16 17 O -0.61 -41.23 12.70 -4.48 -0.06 -41.29 16 18 C -0.57 -32.42 9.54 24.79 0.24 -32.19 16 19 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 20 C 0.03 1.53 5.50 85.33 0.47 2.00 16 21 N -0.81 -49.86 11.82 21.85 0.26 -49.61 16 22 Si 1.00 40.91 29.56 68.60 2.03 42.94 16 23 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.16 -7.67 8.65 22.42 0.19 -7.48 16 27 C -0.09 -3.55 9.69 22.25 0.22 -3.34 16 28 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 29 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.87 7.73 -2.39 -0.02 0.85 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.39 1.78 9.12 -74.06 -0.68 1.10 16 36 H 0.41 4.47 8.60 -92.71 -0.80 3.67 16 37 H 0.12 1.91 8.09 -2.38 -0.02 1.89 16 38 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.41 16.91 8.80 -92.71 -0.82 16.10 16 42 H 0.28 15.29 8.29 -92.71 -0.77 14.53 16 43 H 0.09 5.09 6.42 -2.91 -0.02 5.07 16 44 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -86.81 375.89 0.08 -86.73 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -1.24 Total: 39.02 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.67 Total: -0.20 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.36 Total: -98.81 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -2.02 Total: -69.67 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -86.81 0.08 -86.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357140829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.205 kcal (2) G-P(sol) polarization free energy of solvation -86.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds