Wall clock time and date at job start Fri Apr 10 2020 18:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 H 1.08993 * 109.47444 * 54.99564 * 3 2 1 5 5 C 1.53002 * 109.47529 * 174.99825 * 3 2 1 6 6 O 1.42901 * 109.46674 * 54.99725 * 5 3 2 7 7 N 1.46500 * 109.46955 * 294.99701 * 3 2 1 8 8 C 1.34784 * 120.00131 * 154.99888 * 7 3 2 9 9 O 1.21279 * 119.99592 * 0.02562 * 8 7 3 10 10 C 1.50697 * 119.99763 * 179.72474 * 8 7 3 11 11 C 1.50704 * 109.46985 * 180.27693 * 10 8 7 12 12 C 1.38334 * 119.91275 * 269.72773 * 11 10 8 13 13 C 1.38059 * 120.07701 * 179.76460 * 12 11 10 14 14 C 1.39024 * 119.92063 * 0.52775 * 13 12 11 15 15 N 1.39536 * 120.08608 * 179.70286 * 14 13 12 16 16 C 1.34777 * 119.99884 * 213.41680 * 15 14 13 17 17 O 1.21742 * 120.00354 * 5.26751 * 16 15 14 18 18 C 1.46176 * 119.99997 * 185.27787 * 16 15 14 19 19 H 1.07999 * 119.99821 * 359.97438 * 18 16 15 20 20 C 1.40120 * 119.99888 * 179.97438 * 18 16 15 21 21 N 1.30627 * 120.00214 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99647 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47251 * 89.99835 * 22 20 18 24 24 H 1.48503 * 109.47028 * 209.99903 * 22 20 18 25 25 H 1.48504 * 109.47238 * 330.00003 * 22 20 18 26 26 C 1.39030 * 119.83396 * 359.72360 * 14 13 12 27 27 C 1.38060 * 119.91199 * 0.02562 * 26 14 13 28 28 H 1.09006 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47728 * 300.00319 * 1 2 3 30 30 H 1.09004 * 109.47188 * 60.00339 * 1 2 3 31 31 H 1.08996 * 109.47728 * 239.99681 * 2 1 3 32 32 H 1.09004 * 109.47188 * 119.99661 * 2 1 3 33 33 H 1.08999 * 109.47397 * 174.99464 * 5 3 2 34 34 H 1.09000 * 109.46787 * 295.00152 * 5 3 2 35 35 H 0.96709 * 113.99783 * 180.02562 * 6 5 3 36 36 H 0.96999 * 120.00141 * 334.99743 * 7 3 2 37 37 H 1.08997 * 109.47271 * 300.27317 * 10 8 7 38 38 H 1.08999 * 109.47426 * 60.28107 * 10 8 7 39 39 H 1.08002 * 119.95864 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.04046 * 180.25381 * 13 12 11 41 41 H 0.97001 * 120.00164 * 33.41069 * 15 14 13 42 42 H 0.97002 * 120.00472 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.04367 * 179.97438 * 26 14 13 44 44 H 1.08008 * 119.95701 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4445 0.1258 6 8 4.1292 0.6405 -0.9120 7 7 1.6524 2.0974 -1.2518 8 6 1.5255 3.4384 -1.2997 9 8 1.7326 4.1029 -0.3065 10 6 1.1329 4.1125 -2.5890 11 6 1.0679 5.6032 -2.3770 12 6 -0.1196 6.1927 -1.9822 13 6 -0.1817 7.5573 -1.7823 14 6 0.9482 8.3405 -1.9888 15 7 0.8876 9.7209 -1.7937 16 6 1.6303 10.5431 -2.5611 17 8 2.2798 10.0909 -3.4862 18 6 1.6561 11.9778 -2.2826 19 1 1.0797 12.3790 -1.4621 20 6 2.4286 12.8325 -3.0801 21 7 3.1262 12.3472 -4.0721 22 14 2.4610 14.6661 -2.7245 23 1 3.5603 14.9664 -1.7725 24 1 2.6839 15.4117 -3.9893 25 1 1.1643 15.0779 -2.1291 26 6 2.1385 7.7451 -2.3906 27 6 2.1942 6.3792 -2.5835 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9354 2.4656 0.0366 34 1 3.8498 1.0378 1.0961 35 1 5.0951 0.5958 -0.8936 36 1 1.4871 1.5660 -2.0463 37 1 1.8727 3.8868 -3.3570 38 1 0.1562 3.7479 -2.9070 39 1 -0.9983 5.5842 -1.8270 40 1 -1.1081 8.0164 -1.4701 41 1 0.3110 10.0887 -1.1059 42 1 3.6613 12.9388 -4.6240 43 1 3.0182 8.3504 -2.5524 44 1 3.1185 5.9159 -2.8960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357140830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:40 Heat of formation + Delta-G solvation = -112.775643 kcal Electronic energy + Delta-G solvation = -26013.521208 eV Core-core repulsion = 22123.140685 eV Total energy + Delta-G solvation = -3890.380523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11401 -39.02982 -37.65087 -36.82196 -35.36753 -33.73451 -32.61047 -32.42573 -30.98103 -30.22632 -28.92841 -27.11633 -25.58125 -23.88214 -22.28159 -21.91662 -20.88770 -20.40680 -19.55261 -17.81363 -17.50923 -16.96349 -16.48238 -16.19373 -15.64475 -15.45032 -14.88908 -14.76477 -14.57408 -14.20825 -14.00589 -13.83584 -13.62718 -13.28417 -12.93257 -12.89669 -12.65962 -12.53719 -12.45335 -11.85623 -11.73882 -11.60550 -11.37292 -11.33696 -11.18066 -11.07746 -10.97819 -10.62289 -10.44445 -10.32781 -10.31354 -9.79192 -9.17415 -9.15923 -8.82308 -8.27727 -7.70601 -6.94509 -6.32222 -4.79172 2.00486 2.13380 2.70413 3.08402 3.14467 3.15620 3.19021 3.98947 4.01380 4.29307 4.38544 4.59824 4.67676 4.71434 4.79574 4.92271 5.06174 5.14344 5.18789 5.20660 5.33483 5.42723 5.54016 5.55936 5.61160 5.62441 5.64091 5.71746 5.80256 5.95265 6.05405 6.35315 6.37796 6.47019 6.68153 6.96090 7.18495 7.22465 7.28379 7.30708 7.45086 7.54182 7.79283 8.11519 8.24210 8.27006 8.87556 9.26872 10.42108 10.59831 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002194 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.422297 B =12757.412903 C =13158.562251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.148 3.852 4 H 0.098 0.902 5 C 0.061 3.939 6 O -0.570 6.570 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.527 6.527 10 C -0.089 4.089 11 C -0.121 4.121 12 C -0.084 4.084 13 C -0.177 4.177 14 C 0.196 3.804 15 N -0.701 5.701 16 C 0.543 3.457 17 O -0.560 6.560 18 C -0.539 4.539 19 H 0.072 0.928 20 C 0.086 3.914 21 N -0.760 5.760 22 Si 0.913 3.087 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.128 4.128 27 C -0.084 4.084 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.378 0.622 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.393 0.607 42 H 0.271 0.729 43 H 0.137 0.863 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -23.244 6.427 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.043 3.957 4 H 0.116 0.884 5 C -0.018 4.018 6 O -0.375 6.375 7 N -0.378 5.378 8 C 0.299 3.701 9 O -0.402 6.402 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.103 4.103 13 C -0.199 4.199 14 C 0.097 3.903 15 N -0.344 5.344 16 C 0.350 3.650 17 O -0.442 6.442 18 C -0.575 4.575 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.388 5.388 22 Si 0.737 3.263 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.149 4.149 27 C -0.103 4.103 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.225 0.775 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.154 0.846 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.942 -22.981 6.171 23.977 hybrid contribution 0.267 0.925 0.327 1.017 sum -2.676 -22.056 6.498 23.149 Atomic orbital electron populations 1.21794 0.95398 1.01642 1.02271 1.21694 0.96085 0.95090 1.03452 1.21055 0.92238 0.93836 0.88573 0.88367 1.22671 0.94375 0.94730 0.89994 1.86433 1.25334 1.72197 1.53569 1.46033 1.71505 1.07036 1.13242 1.20902 0.76531 0.81633 0.90992 1.90728 1.48906 1.63906 1.36690 1.20515 1.03533 0.93609 0.95229 1.18904 0.94682 0.92483 1.06203 1.20483 0.96633 0.94066 0.99120 1.20790 0.96892 0.94060 1.08120 1.17980 0.92641 0.84824 0.94831 1.44156 1.48420 1.02882 1.38957 1.18372 0.78719 0.86833 0.81081 1.90634 1.45231 1.77003 1.31305 1.20865 1.30135 0.90194 1.16291 0.91018 1.25745 0.93541 1.00545 0.93665 1.69984 1.19809 1.36271 1.12745 0.86285 0.79442 0.82098 0.78483 1.19583 1.20316 1.18782 1.21254 0.98019 0.93961 1.01626 1.20716 0.96920 0.93463 0.99180 0.92582 0.92664 0.92468 0.90552 0.90808 0.92834 0.93044 0.77532 0.76538 0.88511 0.88662 0.87196 0.86684 0.77422 0.91770 0.84571 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.80 37.15 0.36 -0.61 16 2 C -0.13 -0.83 5.19 -26.73 -0.14 -0.97 16 3 C 0.15 1.31 2.37 -67.93 -0.16 1.14 16 4 H 0.10 1.01 7.58 -51.93 -0.39 0.61 16 5 C 0.06 0.53 6.85 37.16 0.25 0.78 16 6 O -0.57 -4.52 12.83 -35.23 -0.45 -4.97 16 7 N -0.72 -6.75 4.48 -53.81 -0.24 -6.99 16 8 C 0.51 6.53 7.79 -10.98 -0.09 6.45 16 9 O -0.53 -9.06 15.70 5.56 0.09 -8.97 16 10 C -0.09 -1.05 5.83 -29.03 -0.17 -1.22 16 11 C -0.12 -1.98 4.38 -104.55 -0.46 -2.44 16 12 C -0.08 -1.40 9.69 -39.61 -0.38 -1.78 16 13 C -0.18 -3.29 9.97 -39.36 -0.39 -3.68 16 14 C 0.20 4.34 6.28 -83.77 -0.53 3.81 16 15 N -0.70 -16.43 5.32 -11.19 -0.06 -16.49 16 16 C 0.54 15.40 7.47 -13.07 -0.10 15.30 16 17 O -0.56 -17.74 12.70 5.15 0.07 -17.68 16 18 C -0.54 -14.96 9.54 -35.69 -0.34 -15.30 16 19 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 20 C 0.09 2.35 5.50 -17.36 -0.10 2.26 16 21 N -0.76 -22.30 11.82 55.55 0.66 -21.64 16 22 Si 0.91 19.76 29.56 -169.99 -5.02 14.73 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.13 -2.88 8.65 -39.35 -0.34 -3.22 16 27 C -0.08 -1.58 9.69 -39.61 -0.38 -1.97 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 31 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 1.63 9.12 45.56 0.42 2.05 16 36 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 37 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.39 7.92 8.79 -40.82 -0.36 7.56 16 42 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 43 H 0.14 3.48 6.42 -52.49 -0.34 3.14 16 44 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -36.75 375.89 -7.85 -44.61 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.60 Total: 13.18 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.95 Total: -1.45 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.36 Total: -45.12 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.30 Total: -31.62 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.75 -7.85 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357140830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.170 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds