Wall clock time and date at job start Fri Apr 10 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21568 * 119.99685 * 0.02562 * 15 14 12 17 17 C 1.47713 * 120.00029 * 179.97438 * 15 14 12 18 18 C 1.41496 * 126.51593 * 179.71238 * 17 15 14 19 19 C 1.35366 * 105.50339 * 179.84522 * 18 17 15 20 20 C 1.50695 * 126.39050 * 180.14422 * 19 18 17 21 21 C 1.53000 * 117.50160 * 214.09665 * 20 19 18 22 22 C 1.52996 * 117.50549 * 145.43606 * 20 19 18 23 23 N 1.35038 * 107.22430 * 0.41445 * 19 18 17 24 24 H 0.97001 * 124.87867 * 179.72782 * 23 19 18 25 25 N 1.28467 * 110.23269 * 359.72248 * 23 19 18 26 26 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 27 27 H 1.08999 * 109.49861 * 58.58399 * 26 12 11 28 28 O 1.42898 * 109.49343 * 178.68351 * 26 12 11 29 29 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 30 30 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 32 32 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 33 33 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 34 34 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 35 35 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 36 36 H 1.08005 * 127.25083 * 359.97438 * 18 17 15 37 37 H 1.09005 * 115.54623 * 359.76306 * 20 19 18 38 38 H 1.09001 * 117.49762 * 359.97438 * 21 20 19 39 39 H 1.09001 * 117.50004 * 145.01246 * 21 20 19 40 40 H 1.08997 * 117.49999 * 214.98680 * 22 20 19 41 41 H 1.09005 * 117.49320 * 359.97201 * 22 20 19 42 42 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 43 43 H 1.09004 * 109.58525 * 246.16048 * 29 9 7 44 44 H 1.08995 * 109.58430 * 6.43945 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0379 1.2487 14 7 1.0409 -5.6291 2.9572 15 6 -0.0044 -6.2502 3.5387 16 8 -1.1348 -6.0322 3.1483 17 6 0.2237 -7.1965 4.6498 18 6 -0.7665 -7.9161 5.3595 19 6 -0.0930 -8.6514 6.2750 20 6 -0.6964 -9.5968 7.2815 21 6 -0.0111 -9.7088 8.6449 22 6 0.0999 -10.8543 7.6357 23 7 1.2199 -8.3753 6.1221 24 1 1.9336 -8.7620 6.6532 25 7 1.3878 -7.5269 5.1722 26 6 2.0734 -4.6099 0.9881 27 1 2.9048 -4.2393 1.5876 28 8 2.3898 -5.9091 0.4841 29 6 1.8216 -3.6548 -0.1828 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3293 1.6671 32 1 -0.6750 -2.6418 0.7418 33 1 -0.3892 -3.3692 3.0579 34 1 1.3399 -2.9480 3.0083 35 1 1.9430 -5.8033 3.2685 36 1 -1.8347 -7.8867 5.2024 37 1 -1.7830 -9.6797 7.2561 38 1 0.8764 -9.0989 8.8137 39 1 -0.6468 -9.8657 9.5164 40 1 -0.4627 -11.7644 7.8435 41 1 1.0602 -10.9980 7.1402 42 1 3.1770 -5.9323 -0.0771 43 1 1.0518 -4.0695 -0.8336 44 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090583919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:05 Heat of formation + Delta-G solvation = 36.616741 kcal Electronic energy + Delta-G solvation = -26709.274957 eV Core-core repulsion = 22857.665325 eV Total energy + Delta-G solvation = -3851.609632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90101 -39.49556 -37.85787 -37.55009 -35.35770 -34.23434 -32.23248 -31.72147 -30.81454 -29.81155 -28.47711 -25.46270 -24.15000 -23.37963 -22.97399 -22.26075 -21.51838 -21.28677 -19.87300 -19.21096 -18.00140 -17.20725 -16.71186 -16.48405 -16.08821 -15.87125 -15.60354 -14.82719 -14.50782 -14.22273 -14.10824 -13.87500 -13.65937 -13.45259 -13.14444 -12.76765 -12.54166 -12.23022 -12.19032 -12.01255 -11.55305 -11.52079 -11.18385 -11.08401 -10.91280 -10.83393 -10.64196 -10.30455 -10.23234 -9.97125 -9.87153 -9.67388 -9.51614 -9.42082 -9.01407 -8.67040 -8.39932 -6.73706 -5.81515 -3.25429 1.47894 1.88208 2.59117 3.36629 3.38119 3.40703 3.43657 3.44412 3.60870 3.97827 4.21183 4.36227 4.38124 4.42450 4.57795 4.65737 5.03144 5.15611 5.28171 5.34807 5.36403 5.43771 5.47029 5.48450 5.53620 5.62348 5.73549 5.82664 6.03030 6.16238 6.22574 6.39316 6.53195 6.58351 6.70918 6.73930 6.82420 6.94299 7.34040 7.59161 7.65251 7.75896 7.91504 7.98398 8.41165 8.50119 9.16571 9.79112 10.35113 11.27128 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.002487 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.706183 B =11254.040646 C =11563.103525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.162 3.838 13 H 0.090 0.910 14 N -0.701 5.701 15 C 0.599 3.401 16 O -0.533 6.533 17 C 0.000 4.000 18 C -0.169 4.169 19 C 0.042 3.958 20 C -0.085 4.085 21 C -0.174 4.174 22 C -0.174 4.174 23 N -0.383 5.383 24 H 0.441 0.559 25 N -0.256 5.256 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.570 6.570 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.402 0.598 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.373 0.627 43 H 0.030 0.970 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -20.315 15.638 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.350 5.350 15 C 0.382 3.618 16 O -0.408 6.408 17 C -0.161 4.161 18 C -0.197 4.197 19 C -0.084 4.084 20 C -0.104 4.104 21 C -0.212 4.212 22 C -0.212 4.212 23 N -0.097 5.097 24 H 0.285 0.715 25 N -0.092 5.092 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.374 6.374 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.181 0.819 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.219 0.781 43 H 0.047 0.953 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.416 -19.897 15.507 25.342 hybrid contribution 0.960 0.558 0.231 1.135 sum 3.376 -19.339 15.739 25.162 Atomic orbital electron populations 1.70024 1.05269 1.25833 1.53106 1.25063 0.95300 0.98497 1.00573 0.86347 0.78906 0.83240 0.78115 1.21570 1.20990 1.20844 1.19111 0.92625 0.84665 1.42457 0.91610 1.44024 1.35833 1.01018 1.50344 1.20749 0.88742 0.98396 0.87638 1.22546 1.01144 0.94211 1.00816 1.21056 0.97638 0.89261 0.86170 0.89236 1.45941 1.09328 1.44097 1.35654 1.16854 0.85092 0.79174 0.80630 1.90802 1.22491 1.64130 1.63364 1.22085 0.89810 1.03202 1.01050 1.21465 1.00921 0.99827 0.97477 1.20422 0.84505 1.02342 1.01099 1.20520 0.99377 0.96654 0.93895 1.23109 1.03108 1.01908 0.93063 1.23108 1.02030 0.93096 1.02946 1.43187 1.07316 1.32554 1.26661 0.71525 1.73591 1.25438 1.07528 1.02619 1.22773 0.95959 0.83139 0.96220 0.92570 1.86496 1.50468 1.30223 1.70241 1.21526 0.98791 0.87371 0.92935 0.93390 0.88860 0.95755 0.91769 0.92328 0.76379 0.81869 0.84851 0.88797 0.87521 0.87537 0.88792 0.78063 0.95256 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 2 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.46 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.64 3.00 -172.58 -0.52 -15.16 16 10 C 0.17 4.17 5.28 -3.94 -0.02 4.15 16 11 C -0.15 -3.01 5.64 -26.83 -0.15 -3.16 16 12 C 0.16 3.10 2.12 -67.88 -0.14 2.95 16 13 H 0.09 1.93 7.58 -51.93 -0.39 1.53 16 14 N -0.70 -11.88 4.92 -54.75 -0.27 -12.15 16 15 C 0.60 10.64 7.79 -12.39 -0.10 10.54 16 16 O -0.53 -11.10 16.59 5.31 0.09 -11.01 16 17 C 0.00 0.00 7.13 -82.77 -0.59 -0.59 16 18 C -0.17 -2.11 10.73 -39.37 -0.42 -2.53 16 19 C 0.04 0.39 6.64 -82.21 -0.55 -0.15 16 20 C -0.08 -0.52 6.26 -91.78 -0.57 -1.09 16 21 C -0.17 -0.77 10.22 -26.70 -0.27 -1.04 16 22 C -0.17 -0.76 10.23 -26.70 -0.27 -1.04 16 23 N -0.38 -3.54 6.80 33.50 0.23 -3.31 16 24 H 0.44 2.51 8.96 -190.44 -1.71 0.80 16 25 N -0.26 -3.27 11.92 33.42 0.40 -2.87 16 26 C 0.08 1.43 3.14 -26.61 -0.08 1.34 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.57 -9.03 13.16 -35.23 -0.46 -9.49 16 29 C 0.12 2.52 6.14 -3.71 -0.02 2.50 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 2.51 6.04 -51.93 -0.31 2.20 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.40 6.13 8.33 -40.82 -0.34 5.79 16 36 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 37 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 4.26 9.08 45.56 0.41 4.68 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -33.80 367.90 -9.78 -43.58 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.95 Total: 9.09 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.43 Total: 4.78 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.46 Total: -58.94 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.38 Total: -20.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -9.78 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090583919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.196 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds