Wall clock time and date at job start Fri Apr 10 2020 18:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21568 * 119.99685 * 0.02562 * 15 14 12 17 17 C 1.47713 * 120.00029 * 179.97438 * 15 14 12 18 18 C 1.41496 * 126.51593 * 179.71238 * 17 15 14 19 19 C 1.35366 * 105.50339 * 179.84522 * 18 17 15 20 20 C 1.50695 * 126.39050 * 180.14422 * 19 18 17 21 21 C 1.53000 * 117.50160 * 214.09665 * 20 19 18 22 22 C 1.52996 * 117.50549 * 145.43606 * 20 19 18 23 23 N 1.35038 * 107.22430 * 0.41445 * 19 18 17 24 24 H 0.97001 * 124.87867 * 179.72782 * 23 19 18 25 25 N 1.28467 * 110.23269 * 359.72248 * 23 19 18 26 26 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 27 27 H 1.08999 * 109.49861 * 58.58399 * 26 12 11 28 28 O 1.42898 * 109.49343 * 178.68351 * 26 12 11 29 29 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 30 30 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 32 32 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 33 33 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 34 34 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 35 35 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 36 36 H 1.08005 * 127.25083 * 359.97438 * 18 17 15 37 37 H 1.09005 * 115.54623 * 359.76306 * 20 19 18 38 38 H 1.09001 * 117.49762 * 359.97438 * 21 20 19 39 39 H 1.09001 * 117.50004 * 145.01246 * 21 20 19 40 40 H 1.08997 * 117.49999 * 214.98680 * 22 20 19 41 41 H 1.09005 * 117.49320 * 359.97201 * 22 20 19 42 42 H 0.96702 * 113.99942 * 179.83960 * 28 26 12 43 43 H 1.09004 * 109.58525 * 246.16048 * 29 9 7 44 44 H 1.08995 * 109.58430 * 6.43945 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0379 1.2487 14 7 1.0409 -5.6291 2.9572 15 6 -0.0044 -6.2502 3.5387 16 8 -1.1348 -6.0322 3.1483 17 6 0.2237 -7.1965 4.6498 18 6 -0.7665 -7.9161 5.3595 19 6 -0.0930 -8.6514 6.2750 20 6 -0.6964 -9.5968 7.2815 21 6 -0.0111 -9.7088 8.6449 22 6 0.0999 -10.8543 7.6357 23 7 1.2199 -8.3753 6.1221 24 1 1.9336 -8.7620 6.6532 25 7 1.3878 -7.5269 5.1722 26 6 2.0734 -4.6099 0.9881 27 1 2.9048 -4.2393 1.5876 28 8 2.3898 -5.9091 0.4841 29 6 1.8216 -3.6548 -0.1828 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3293 1.6671 32 1 -0.6750 -2.6418 0.7418 33 1 -0.3892 -3.3692 3.0579 34 1 1.3399 -2.9480 3.0083 35 1 1.9430 -5.8033 3.2685 36 1 -1.8347 -7.8867 5.2024 37 1 -1.7830 -9.6797 7.2561 38 1 0.8764 -9.0989 8.8137 39 1 -0.6468 -9.8657 9.5164 40 1 -0.4627 -11.7644 7.8435 41 1 1.0602 -10.9980 7.1402 42 1 3.1770 -5.9323 -0.0771 43 1 1.0518 -4.0695 -0.8336 44 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090583919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:04 Heat of formation + Delta-G solvation = 10.379436 kcal Electronic energy + Delta-G solvation = -26710.412692 eV Core-core repulsion = 22857.665325 eV Total energy + Delta-G solvation = -3852.747367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.80251 -40.97717 -39.34700 -38.07030 -36.98857 -35.80050 -33.87173 -32.96899 -31.94624 -31.31997 -30.15002 -27.24600 -25.35822 -24.36095 -23.88705 -23.27456 -23.14376 -22.12882 -21.39952 -20.69404 -18.93198 -18.73782 -18.03524 -17.89467 -17.35915 -16.85386 -16.73450 -16.40722 -15.76539 -15.65538 -15.61757 -15.14462 -14.98880 -14.89518 -14.51447 -14.33442 -13.88912 -13.62606 -13.28182 -13.16356 -12.97952 -12.68088 -12.46400 -12.40638 -12.15389 -12.08055 -12.04594 -12.01597 -11.88601 -11.52833 -11.39063 -11.17995 -11.02874 -10.57647 -10.50721 -10.04355 -9.78599 -8.76549 -7.89418 -5.36840 0.44352 0.97317 1.48831 1.51746 1.58435 1.76803 2.15233 2.31070 2.49959 2.99975 3.10653 3.26066 3.32419 3.42862 3.62419 3.76995 3.85097 4.03818 4.04588 4.09840 4.20637 4.22527 4.38251 4.53207 4.56091 4.67497 4.75556 4.77531 4.84375 4.92840 5.00305 5.01863 5.11925 5.14140 5.19641 5.24618 5.36911 5.42723 5.60419 5.65934 6.00271 6.34332 6.43533 6.80940 6.88339 7.09940 7.14583 7.78294 8.31363 9.18074 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.002487 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.706183 B =11254.040646 C =11563.103525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.297 1.297 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.266 4.266 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.130 4.130 12 C 0.169 3.831 13 H 0.060 0.940 14 N -0.691 5.691 15 C 0.596 3.404 16 O -0.574 6.574 17 C -0.029 4.029 18 C -0.196 4.196 19 C 0.067 3.933 20 C -0.107 4.107 21 C -0.164 4.164 22 C -0.163 4.163 23 N -0.363 5.363 24 H 0.459 0.541 25 N -0.261 5.261 26 C 0.102 3.898 27 H 0.072 0.928 28 O -0.571 6.571 29 C 0.119 3.881 30 H 0.251 0.749 31 H 0.064 0.936 32 H -0.006 1.006 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.396 0.604 43 H 0.014 0.986 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -22.302 17.604 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.224 1.224 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.396 4.396 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.170 4.170 12 C 0.064 3.936 13 H 0.079 0.921 14 N -0.340 5.340 15 C 0.382 3.618 16 O -0.451 6.451 17 C -0.188 4.188 18 C -0.224 4.224 19 C -0.059 4.059 20 C -0.126 4.126 21 C -0.201 4.201 22 C -0.201 4.201 23 N -0.080 5.080 24 H 0.307 0.693 25 N -0.098 5.098 26 C 0.041 3.959 27 H 0.090 0.910 28 O -0.378 6.378 29 C -0.008 4.008 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.925 -21.933 17.478 28.474 hybrid contribution 0.219 1.021 -0.348 1.101 sum 5.145 -20.912 17.130 27.517 Atomic orbital electron populations 1.70197 1.06909 1.26154 1.54878 1.25894 0.96021 1.01860 1.00920 0.85277 0.77468 0.78797 0.78500 1.22361 1.20160 1.19801 1.19527 0.93198 0.85491 1.41388 0.90541 1.44235 1.35623 1.02133 1.50832 1.20461 0.87961 0.97662 0.88518 1.22271 1.01248 0.94336 0.99126 1.20742 0.97564 0.88547 0.86738 0.92136 1.45728 1.09888 1.43474 1.34947 1.17279 0.84452 0.79144 0.80925 1.90771 1.24004 1.65577 1.64795 1.21688 0.91386 1.04278 1.01486 1.21606 1.01017 1.01068 0.98748 1.20750 0.84004 1.01031 1.00092 1.20662 1.00016 0.97513 0.94437 1.23229 1.02962 1.01494 0.92461 1.23227 1.01823 0.92931 1.02070 1.43251 1.08082 1.31116 1.25504 0.69348 1.73499 1.24579 1.08321 1.03432 1.22313 0.95523 0.83313 0.94740 0.91013 1.86468 1.52086 1.28471 1.70799 1.21681 0.98831 0.86145 0.94097 0.93990 0.91726 0.98815 0.92305 0.91357 0.75042 0.82040 0.84059 0.88325 0.86212 0.86188 0.88305 0.75380 0.96797 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 11.19 21.65 0.24 -55.91 16 2 C -0.05 -2.86 4.91 84.86 0.42 -2.45 16 3 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 4 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.27 -14.39 9.58 84.03 0.81 -13.58 16 8 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.60 -30.47 3.00 -699.93 -2.10 -32.57 16 10 C 0.18 9.21 5.28 86.22 0.46 9.66 16 11 C -0.13 -5.45 5.64 30.53 0.17 -5.28 16 12 C 0.17 6.52 2.12 45.02 0.10 6.61 16 13 H 0.06 2.71 7.58 -2.39 -0.02 2.70 16 14 N -0.69 -23.32 4.92 -445.39 -2.19 -25.51 16 15 C 0.60 21.65 7.79 86.75 0.68 22.32 16 16 O -0.57 -25.02 16.59 -3.93 -0.07 -25.09 16 17 C -0.03 -0.85 7.13 42.46 0.30 -0.55 16 18 C -0.20 -4.86 10.73 22.41 0.24 -4.62 16 19 C 0.07 1.15 6.64 41.40 0.28 1.42 16 20 C -0.11 -1.02 6.26 -11.54 -0.07 -1.10 16 21 C -0.16 -0.88 10.22 30.62 0.31 -0.56 16 22 C -0.16 -0.86 10.23 30.62 0.31 -0.55 16 23 N -0.36 -5.86 6.80 -47.93 -0.33 -6.18 16 24 H 0.46 3.75 8.96 -219.99 -1.97 1.78 16 25 N -0.26 -6.29 11.92 -48.18 -0.57 -6.87 16 26 C 0.10 3.52 3.14 30.67 0.10 3.62 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 O -0.57 -16.87 13.16 -148.98 -1.96 -18.83 16 29 C 0.12 4.90 6.14 86.36 0.53 5.43 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.06 3.66 6.04 -2.38 -0.01 3.64 16 32 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 33 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.41 12.08 8.33 -92.70 -0.77 11.31 16 36 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.40 7.82 9.08 -74.06 -0.67 7.14 16 43 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 Total: -1.00 -75.70 367.90 -2.68 -78.39 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -2.36 Total: 25.69 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 4.62 Total: 20.38 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -4.95 Total: -127.04 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.03 Total: -43.92 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.70 -2.68 -78.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090583919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.766 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds