Wall clock time and date at job start Fri Apr 10 2020 18:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38805 * 120.42299 * 2 1 4 4 C 1.39497 * 118.25881 * 179.97438 * 3 2 1 5 5 C 1.48454 * 120.54694 * 180.02562 * 4 3 2 6 6 O 1.21476 * 120.00339 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00011 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99985 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46208 * 324.97375 * 8 7 5 10 10 C 1.53044 * 109.46007 * 84.93549 * 8 7 5 11 11 C 1.52755 * 109.38132 * 181.25927 * 10 8 7 12 12 N 1.46923 * 109.00900 * 305.58408 * 11 10 8 13 13 C 1.36943 * 120.62930 * 233.58508 * 12 11 10 14 14 H 1.08004 * 119.99477 * 152.17479 * 13 12 11 15 15 C 1.38811 * 119.99955 * 332.17173 * 13 12 11 16 16 N 1.31614 * 120.00254 * 342.76805 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 162.76720 * 15 13 12 18 18 H 1.48495 * 109.47047 * 270.00192 * 17 15 13 19 19 H 1.48504 * 109.46831 * 30.00016 * 17 15 13 20 20 H 1.48496 * 109.47210 * 149.99747 * 17 15 13 21 21 C 1.46927 * 118.73893 * 53.31139 * 12 11 10 22 22 C 1.53046 * 109.45791 * 204.99746 * 8 7 5 23 23 H 1.08998 * 109.52193 * 58.65110 * 22 8 7 24 24 O 1.42894 * 109.49909 * 298.57021 * 22 8 7 25 25 N 1.33102 * 118.90264 * 0.27378 * 4 3 2 26 26 C 1.31551 * 120.73799 * 359.44197 * 25 4 3 27 27 C 1.50698 * 119.04736 * 180.29079 * 26 25 4 28 28 N 1.31914 * 121.91265 * 0.57540 * 26 25 4 29 29 H 1.09000 * 109.47168 * 90.00128 * 1 2 3 30 30 H 1.08997 * 109.47158 * 210.00000 * 1 2 3 31 31 H 1.09004 * 109.46815 * 329.99697 * 1 2 3 32 32 H 1.07996 * 120.86997 * 359.95636 * 3 2 1 33 33 H 0.97006 * 119.99849 * 359.97438 * 7 5 4 34 34 H 1.09007 * 109.49256 * 301.33300 * 10 8 7 35 35 H 1.09002 * 109.49531 * 61.42998 * 10 8 7 36 36 H 1.09005 * 109.50719 * 185.70148 * 11 10 8 37 37 H 1.09006 * 109.43430 * 65.42411 * 11 10 8 38 38 H 0.97000 * 119.99965 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.58525 * 66.43417 * 21 12 11 40 40 H 1.08995 * 109.58430 * 186.71314 * 21 12 11 41 41 H 0.96705 * 113.99942 * 180.16232 * 24 22 8 42 42 H 1.08997 * 109.47153 * 270.27943 * 27 26 25 43 43 H 1.09000 * 109.47030 * 30.27777 * 27 26 25 44 44 H 1.08999 * 109.47291 * 150.27560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4062 2.3934 0.0011 6 8 3.8493 3.4730 0.0007 7 7 5.7525 2.3296 0.0022 8 6 6.5441 3.5623 0.0022 9 1 6.0327 4.3223 -0.5884 10 6 6.7114 4.0608 1.4395 11 6 7.5103 5.3627 1.4347 12 7 8.7755 5.1453 0.7201 13 6 9.9720 5.4558 1.3094 14 1 10.8673 4.9212 1.0281 15 6 10.0341 6.4577 2.2682 16 7 9.0534 7.3290 2.3740 17 14 11.5096 6.5691 3.4083 18 1 11.2551 5.7608 4.6276 19 1 12.7136 6.0489 2.7118 20 1 11.7331 7.9863 3.7915 21 6 8.7329 4.5826 -0.6365 22 6 7.9206 3.2842 -0.6064 23 1 7.8003 2.9067 -1.6218 24 8 8.6048 2.3117 0.1860 25 7 4.2028 -0.0444 -0.0045 26 6 3.4955 -1.1536 0.0010 27 6 4.2130 -2.4789 0.0017 28 7 2.1765 -1.1396 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6912 2.1442 -0.0007 33 1 6.1972 1.4675 0.0029 34 1 5.7299 4.2363 1.8801 35 1 7.2448 3.3116 2.0246 36 1 7.7178 5.6663 2.4609 37 1 6.9349 6.1395 0.9310 38 1 9.0966 8.0288 3.0443 39 1 8.2593 5.2944 -1.3126 40 1 9.7469 4.3739 -0.9775 41 1 9.4872 2.0884 -0.1407 42 1 4.3864 -2.7986 -1.0258 43 1 5.1684 -2.3745 0.5159 44 1 3.6032 -3.2220 0.5155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090645045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:20 Heat of formation + Delta-G solvation = -15.863589 kcal Electronic energy + Delta-G solvation = -27119.503946 eV Core-core repulsion = 23265.618596 eV Total energy + Delta-G solvation = -3853.885350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51612 -39.65529 -37.99837 -35.01963 -34.92649 -34.28823 -33.68451 -31.78962 -30.00536 -29.55828 -28.81018 -28.44145 -25.78760 -24.30933 -22.50114 -22.35098 -21.84731 -20.39307 -19.51773 -18.33240 -17.43932 -17.01478 -16.03739 -15.88155 -15.70257 -15.63729 -15.04058 -14.66461 -14.59834 -14.23317 -13.98892 -13.75025 -13.68693 -13.39667 -13.20168 -12.90216 -12.81159 -12.58506 -12.54174 -12.10982 -12.04494 -11.25538 -11.20132 -11.04997 -10.86427 -10.77395 -10.74103 -10.38373 -10.28972 -10.20079 -10.03287 -9.72513 -9.66243 -9.50680 -9.32329 -8.74296 -8.41600 -6.68498 -5.78773 -3.21186 0.31443 0.62933 2.69738 3.00552 3.38800 3.45530 3.46349 3.54998 3.58321 3.67150 4.29057 4.47520 4.62823 4.64815 4.71544 5.02084 5.12051 5.13332 5.21680 5.23320 5.26552 5.35385 5.40144 5.45406 5.57127 5.58076 5.66294 5.74415 5.91820 6.08509 6.20327 6.34355 6.46440 6.55597 6.60731 6.61788 6.80659 6.88091 7.39275 7.57687 7.67416 7.78645 7.79085 8.09614 8.22822 8.43946 9.19389 9.82201 10.38159 11.29761 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002845 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.741157 B = 9840.256840 C =10296.731728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 C -0.180 4.180 4 C 0.144 3.856 5 C 0.562 3.438 6 O -0.527 6.527 7 N -0.691 5.691 8 C 0.159 3.841 9 H 0.093 0.907 10 C -0.144 4.144 11 C 0.174 3.826 12 N -0.582 5.582 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.280 1.280 20 H -0.292 1.292 21 C 0.119 3.881 22 C 0.082 3.918 23 H 0.046 0.954 24 O -0.554 6.554 25 N -0.499 5.499 26 C 0.319 3.681 27 C -0.085 4.085 28 N -0.511 5.511 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.020 0.980 38 H 0.254 0.746 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.373 0.627 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -17.319 -6.964 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.203 4.203 4 C -0.003 4.003 5 C 0.345 3.655 6 O -0.402 6.402 7 N -0.341 5.341 8 C 0.055 3.945 9 H 0.111 0.889 10 C -0.184 4.184 11 C 0.048 3.952 12 N -0.304 5.304 13 C -0.379 4.379 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.205 1.205 20 H -0.218 1.218 21 C -0.009 4.009 22 C 0.021 3.979 23 H 0.064 0.936 24 O -0.358 6.358 25 N -0.216 5.216 26 C 0.052 3.948 27 C -0.143 4.143 28 N -0.227 5.227 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.220 0.780 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.453 -17.155 -6.511 22.752 hybrid contribution 0.990 0.527 0.276 1.155 sum -12.463 -16.627 -6.235 21.695 Atomic orbital electron populations 1.20809 0.87168 1.04395 1.03939 1.21830 0.97857 0.87637 0.89673 1.22802 0.94711 1.01355 1.01392 1.21796 0.92142 0.92536 0.93846 1.17812 0.82882 0.86806 0.77998 1.90806 1.71326 1.28020 1.50076 1.46092 1.04986 1.11573 1.71441 1.21162 0.88727 0.85181 0.99387 0.88885 1.22440 1.00137 1.01527 0.94294 1.20692 0.84664 0.90254 0.99603 1.43901 1.03144 1.73181 1.10163 1.19130 0.87056 1.12804 1.18942 0.91736 1.25034 0.97782 0.95271 1.01575 1.70033 1.33306 1.15786 1.35444 0.86272 0.82292 0.76749 0.81304 1.21450 1.20493 1.21822 1.21539 0.97870 0.92214 0.89268 1.22612 0.91973 0.91338 0.91997 0.93579 1.86457 1.33036 1.60462 1.55885 1.68207 1.41628 0.98116 1.13697 1.23247 0.86457 0.94631 0.90471 1.20594 1.00192 0.89448 1.04063 1.68049 1.09803 1.30536 1.14342 0.89408 0.89694 0.89702 0.82221 0.75101 0.92959 0.91402 0.89072 0.96213 0.93578 0.95466 0.91917 0.78049 0.89459 0.89221 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.22 36.01 0.37 -0.30 16 2 C 0.18 1.84 6.83 -82.23 -0.56 1.28 16 3 C -0.18 -2.13 9.41 -38.90 -0.37 -2.50 16 4 C 0.14 2.03 6.79 -82.64 -0.56 1.46 16 5 C 0.56 9.19 7.79 -12.05 -0.09 9.09 16 6 O -0.53 -9.92 16.09 5.39 0.09 -9.84 16 7 N -0.69 -11.07 5.04 -54.51 -0.28 -11.34 16 8 C 0.16 2.86 2.20 -67.88 -0.15 2.71 16 9 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 10 C -0.14 -2.99 5.50 -26.83 -0.15 -3.14 16 11 C 0.17 4.26 5.28 -3.94 -0.02 4.24 16 12 N -0.58 -14.29 2.94 -172.58 -0.51 -14.80 16 13 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 14 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 15 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 16 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 17 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.12 2.36 6.16 -3.71 -0.02 2.33 16 22 C 0.08 1.37 3.38 -26.61 -0.09 1.28 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 O -0.55 -9.13 12.09 -35.23 -0.43 -9.55 16 25 N -0.50 -6.57 9.60 -7.33 -0.07 -6.64 16 26 C 0.32 3.68 7.64 -157.30 -1.20 2.48 16 27 C -0.08 -0.65 10.31 36.00 0.37 -0.28 16 28 N -0.51 -5.82 10.25 -7.00 -0.07 -5.89 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.16 1.71 7.74 -52.49 -0.41 1.31 16 33 H 0.41 6.20 7.64 -40.82 -0.31 5.89 16 34 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.07 1.49 7.61 -51.93 -0.40 1.10 16 36 H 0.09 2.51 6.04 -51.93 -0.31 2.19 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 41 H 0.37 4.83 9.08 45.56 0.41 5.24 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -32.95 365.30 -8.47 -41.41 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.59 Total: 8.33 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -2.71 Total: 11.75 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.30 Total: -64.30 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.34 Total: -19.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.95 -8.47 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090645045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.550 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds