Wall clock time and date at job start Fri Apr 10 2020 18:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47000 * 272.90467 * 3 2 1 5 5 H 1.48499 * 109.47674 * 32.90368 * 3 2 1 6 6 H 1.48497 * 109.47072 * 152.90779 * 3 2 1 7 7 C 1.38814 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00051 * 339.36985 * 7 2 1 9 9 N 1.36930 * 119.99956 * 159.36418 * 7 2 1 10 10 C 1.46927 * 120.63024 * 152.60344 * 9 7 2 11 11 C 1.53197 * 108.77501 * 126.41388 * 10 9 7 12 12 C 1.53044 * 109.31055 * 54.63591 * 11 10 9 13 13 H 1.09003 * 109.45675 * 58.65573 * 12 11 10 14 14 N 1.46501 * 109.46013 * 178.61198 * 12 11 10 15 15 C 1.34774 * 120.00206 * 275.07391 * 14 12 11 16 16 O 1.21601 * 119.99787 * 359.97438 * 15 14 12 17 17 C 1.47427 * 120.00181 * 180.02562 * 15 14 12 18 18 C 1.38044 * 126.41175 * 359.67980 * 17 15 14 19 19 N 1.34258 * 107.41866 * 179.87242 * 18 17 15 20 20 H 0.96993 * 125.75826 * 180.17854 * 19 18 17 21 21 N 1.39939 * 108.48801 * 0.39897 * 19 18 17 22 22 C 1.30444 * 108.89656 * 359.74558 * 21 19 18 23 23 C 1.50704 * 125.98598 * 179.97438 * 22 21 19 24 24 C 1.52997 * 117.50135 * 8.75260 * 23 22 21 25 25 C 1.53002 * 117.50076 * 300.08952 * 23 22 21 26 26 C 1.53034 * 109.54062 * 298.63743 * 12 11 10 27 27 H 1.09001 * 109.52538 * 181.33261 * 26 12 11 28 28 O 1.42906 * 109.49583 * 301.41408 * 26 12 11 29 29 C 1.46925 * 120.63311 * 332.63051 * 9 7 2 30 30 H 0.96999 * 120.00085 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58963 * 246.20319 * 10 9 7 32 32 H 1.09002 * 109.58523 * 6.62927 * 10 9 7 33 33 H 1.09002 * 109.49820 * 174.58597 * 11 10 9 34 34 H 1.09002 * 109.49805 * 294.65814 * 11 10 9 35 35 H 0.97000 * 119.99682 * 95.07237 * 14 12 11 36 36 H 1.08004 * 126.29004 * 0.02808 * 18 17 15 37 37 H 1.09000 * 115.54500 * 154.42103 * 23 22 21 38 38 H 1.09013 * 117.49557 * 359.97438 * 24 23 22 39 39 H 1.08997 * 117.49994 * 145.01484 * 24 23 22 40 40 H 1.09002 * 117.49636 * 214.97532 * 25 23 22 41 41 H 1.08996 * 117.49802 * 359.97438 * 25 23 22 42 42 H 0.96703 * 113.99728 * 179.83719 * 28 26 12 43 43 H 1.09006 * 109.58797 * 113.79686 * 29 9 7 44 44 H 1.09002 * 109.58411 * 353.37238 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4361 2.0819 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6376 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3305 9 7 3.3137 -1.2403 -0.4174 10 6 4.2350 -2.2628 0.0968 11 6 4.8756 -2.9906 -1.0893 12 6 5.5296 -1.9655 -2.0187 13 1 6.2786 -1.3992 -1.4651 14 7 6.1719 -2.6605 -3.1371 15 6 7.4222 -3.1448 -3.0008 16 8 8.0174 -3.0044 -1.9498 17 6 8.0688 -3.8437 -4.1264 18 6 7.5170 -4.0807 -5.3694 19 7 8.4331 -4.7396 -6.0968 20 1 8.3226 -5.0361 -7.0136 21 7 9.5726 -4.9310 -5.3073 22 6 9.3667 -4.4017 -4.1330 23 6 10.3421 -4.3885 -2.9842 24 6 11.7684 -4.8669 -3.2630 25 6 10.8146 -5.7394 -2.4430 26 6 4.4630 -1.0094 -2.5575 27 1 4.9252 -0.2941 -3.2379 28 8 3.4634 -1.7546 -3.2558 29 6 3.8177 -0.2593 -1.3880 30 1 -0.4850 0.8400 -0.0004 31 1 5.0113 -1.7871 0.6961 32 1 3.6838 -2.9766 0.7090 33 1 5.6321 -3.6854 -0.7244 34 1 4.1094 -3.5407 -1.6355 35 1 5.6972 -2.7722 -3.9756 36 1 6.5306 -3.7875 -5.6974 37 1 10.2145 -3.5764 -2.2686 38 1 12.0011 -5.1916 -4.2773 39 1 12.5791 -4.3698 -2.7304 40 1 10.9983 -5.8158 -1.3713 41 1 10.4196 -6.6377 -2.9175 42 1 2.7526 -1.2113 -3.6230 43 1 4.5600 0.3799 -0.9098 44 1 2.9911 0.3489 -1.7556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090696880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:36 Heat of formation + Delta-G solvation = 43.458138 kcal Electronic energy + Delta-G solvation = -27391.222396 eV Core-core repulsion = 23539.909429 eV Total energy + Delta-G solvation = -3851.312967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68016 -39.54476 -37.96955 -37.19363 -35.00463 -34.35667 -32.23146 -31.65829 -30.89929 -29.80228 -29.11362 -25.23881 -24.21255 -23.34082 -22.77401 -22.47425 -21.62692 -20.04447 -19.81035 -19.42451 -18.55093 -17.35040 -16.43277 -16.24905 -15.77199 -15.59350 -15.31387 -15.08316 -14.80643 -14.30962 -14.28346 -14.12155 -13.91706 -13.35314 -13.17572 -12.69778 -12.41219 -12.36577 -12.10899 -11.71952 -11.68531 -11.48605 -11.35256 -11.15334 -10.97282 -10.70685 -10.52843 -10.44235 -10.27233 -10.06663 -9.69990 -9.52795 -9.50380 -9.39350 -9.06211 -8.67439 -8.63490 -6.98040 -5.96807 -3.31265 1.27775 1.89642 2.39634 3.23841 3.35858 3.44461 3.46134 3.48026 3.85140 4.13721 4.36326 4.48130 4.61457 4.67503 4.85008 4.91342 4.93775 5.11577 5.16964 5.29100 5.33420 5.36185 5.44524 5.51019 5.64604 5.69652 5.77340 5.99340 6.00481 6.07066 6.13244 6.18700 6.28264 6.32245 6.39745 6.50246 6.67897 6.76746 6.81745 6.99801 7.26434 7.74989 7.91259 8.09912 8.31849 8.43890 8.91653 9.69362 10.06998 11.19348 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.003033 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.697384 B = 9229.955312 C = 9679.664100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.879 3.121 4 H -0.291 1.291 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.086 0.914 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.138 4.138 12 C 0.164 3.836 13 H 0.092 0.908 14 N -0.717 5.717 15 C 0.590 3.410 16 O -0.542 6.542 17 C -0.277 4.277 18 C 0.104 3.896 19 N -0.462 5.462 20 H 0.444 0.556 21 N -0.300 5.300 22 C 0.166 3.834 23 C -0.082 4.082 24 C -0.170 4.170 25 C -0.159 4.159 26 C 0.082 3.918 27 H 0.048 0.952 28 O -0.554 6.554 29 C 0.098 3.902 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.187 0.813 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.378 0.622 43 H 0.034 0.966 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.623 -7.888 -13.278 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.710 3.290 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.319 5.319 10 C 0.024 3.976 11 C -0.178 4.178 12 C 0.060 3.940 13 H 0.110 0.890 14 N -0.367 5.367 15 C 0.377 3.623 16 O -0.420 6.420 17 C -0.292 4.292 18 C -0.049 4.049 19 N -0.166 5.166 20 H 0.288 0.712 21 N -0.123 5.123 22 C -0.001 4.001 23 C -0.102 4.102 24 C -0.208 4.208 25 C -0.197 4.197 26 C 0.021 3.979 27 H 0.066 0.934 28 O -0.359 6.359 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.204 0.796 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.225 0.775 43 H 0.052 0.948 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.073 -8.817 -13.043 24.731 hybrid contribution -1.085 1.792 -0.767 2.231 sum 17.988 -7.025 -13.810 23.741 Atomic orbital electron populations 1.69838 1.05664 1.26429 1.53267 1.25275 0.95218 0.97366 0.99939 0.87022 0.80226 0.84947 0.76847 1.21947 1.23082 1.19499 1.18928 0.84919 0.94716 1.39298 0.89630 1.44211 1.08765 1.33100 1.45829 1.20930 0.92231 0.91240 0.93152 1.22306 0.99689 0.97989 0.97815 1.20942 0.92673 0.93307 0.87036 0.88961 1.45971 1.15044 1.58530 1.17185 1.17229 0.80932 0.77861 0.86317 1.90734 1.64152 1.58632 1.28474 1.20324 0.97292 1.15519 0.96036 1.23203 0.95829 0.94191 0.91635 1.46050 1.11155 1.44892 1.14547 0.71168 1.77089 1.05890 1.25586 1.03691 1.21452 0.92914 0.93372 0.92411 1.20545 0.92606 1.00780 0.96277 1.23028 0.92276 1.03618 1.01832 1.22970 1.02874 0.93538 1.00300 1.22567 0.88709 0.92635 0.94032 0.93443 1.86379 1.37629 1.38089 1.73846 1.22049 0.97980 0.92576 0.90289 0.92820 0.95707 0.91520 0.92283 0.90849 0.76778 0.79580 0.84155 0.88234 0.88273 0.87964 0.88853 0.77480 0.94844 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.23 13.97 55.49 0.78 -26.46 16 2 C 0.02 0.57 5.23 -17.43 -0.09 0.48 16 3 Si 0.88 21.64 24.35 -169.99 -4.14 17.50 16 4 H -0.29 -6.77 6.62 56.52 0.37 -6.40 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 7 C -0.25 -6.82 10.03 -15.06 -0.15 -6.98 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 9 N -0.60 -13.75 2.71 -172.31 -0.47 -14.22 16 10 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 11 C -0.14 -2.43 5.51 -26.61 -0.15 -2.58 16 12 C 0.16 2.66 2.20 -67.89 -0.15 2.51 16 13 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 14 N -0.72 -9.66 5.04 -54.84 -0.28 -9.94 16 15 C 0.59 8.57 7.78 -12.52 -0.10 8.47 16 16 O -0.54 -9.51 14.66 5.28 0.08 -9.43 16 17 C -0.28 -3.37 6.13 -105.07 -0.64 -4.01 16 18 C 0.10 0.86 11.52 -16.56 -0.19 0.67 16 19 N -0.46 -3.65 7.29 30.85 0.22 -3.42 16 20 H 0.44 1.82 8.96 -182.73 -1.64 0.18 16 21 N -0.30 -3.41 12.22 33.89 0.41 -2.99 16 22 C 0.17 2.08 6.79 -82.02 -0.56 1.52 16 23 C -0.08 -0.97 5.65 -91.77 -0.52 -1.49 16 24 C -0.17 -1.61 10.14 -26.69 -0.27 -1.88 16 25 C -0.16 -1.59 10.24 -26.69 -0.27 -1.86 16 26 C 0.08 1.34 3.38 -26.61 -0.09 1.25 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 O -0.55 -8.94 12.09 -35.23 -0.43 -9.37 16 29 C 0.10 2.01 3.84 -3.71 -0.01 1.99 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 35 H 0.40 4.44 7.18 -40.82 -0.29 4.14 16 36 H 0.19 0.85 7.46 -52.48 -0.39 0.46 16 37 H 0.14 1.85 6.73 -51.93 -0.35 1.50 16 38 H 0.10 0.96 7.90 -51.92 -0.41 0.55 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.38 5.32 9.08 45.56 0.41 5.74 16 43 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 44 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -34.42 354.86 -8.30 -42.73 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.62 Total: 9.15 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.22 Total: 1.11 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.67 Total: -57.03 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.35 Total: -18.80 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.42 -8.30 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090696880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.185 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds