Wall clock time and date at job start Fri Apr 10 2020 18:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47000 * 272.90467 * 3 2 1 5 5 H 1.48499 * 109.47674 * 32.90368 * 3 2 1 6 6 H 1.48497 * 109.47072 * 152.90779 * 3 2 1 7 7 C 1.38814 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00051 * 339.36985 * 7 2 1 9 9 N 1.36930 * 119.99956 * 159.36418 * 7 2 1 10 10 C 1.46927 * 120.63024 * 152.60344 * 9 7 2 11 11 C 1.53197 * 108.77501 * 126.41388 * 10 9 7 12 12 C 1.53044 * 109.31055 * 54.63591 * 11 10 9 13 13 H 1.09003 * 109.45675 * 58.65573 * 12 11 10 14 14 N 1.46501 * 109.46013 * 178.61198 * 12 11 10 15 15 C 1.34774 * 120.00206 * 275.07391 * 14 12 11 16 16 O 1.21601 * 119.99787 * 359.97438 * 15 14 12 17 17 C 1.47427 * 120.00181 * 180.02562 * 15 14 12 18 18 C 1.38044 * 126.41175 * 359.67980 * 17 15 14 19 19 N 1.34258 * 107.41866 * 179.87242 * 18 17 15 20 20 H 0.96993 * 125.75826 * 180.17854 * 19 18 17 21 21 N 1.39939 * 108.48801 * 0.39897 * 19 18 17 22 22 C 1.30444 * 108.89656 * 359.74558 * 21 19 18 23 23 C 1.50704 * 125.98598 * 179.97438 * 22 21 19 24 24 C 1.52997 * 117.50135 * 8.75260 * 23 22 21 25 25 C 1.53002 * 117.50076 * 300.08952 * 23 22 21 26 26 C 1.53034 * 109.54062 * 298.63743 * 12 11 10 27 27 H 1.09001 * 109.52538 * 181.33261 * 26 12 11 28 28 O 1.42906 * 109.49583 * 301.41408 * 26 12 11 29 29 C 1.46925 * 120.63311 * 332.63051 * 9 7 2 30 30 H 0.96999 * 120.00085 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58963 * 246.20319 * 10 9 7 32 32 H 1.09002 * 109.58523 * 6.62927 * 10 9 7 33 33 H 1.09002 * 109.49820 * 174.58597 * 11 10 9 34 34 H 1.09002 * 109.49805 * 294.65814 * 11 10 9 35 35 H 0.97000 * 119.99682 * 95.07237 * 14 12 11 36 36 H 1.08004 * 126.29004 * 0.02808 * 18 17 15 37 37 H 1.09000 * 115.54500 * 154.42103 * 23 22 21 38 38 H 1.09013 * 117.49557 * 359.97438 * 24 23 22 39 39 H 1.08997 * 117.49994 * 145.01484 * 24 23 22 40 40 H 1.09002 * 117.49636 * 214.97532 * 25 23 22 41 41 H 1.08996 * 117.49802 * 359.97438 * 25 23 22 42 42 H 0.96703 * 113.99728 * 179.83719 * 28 26 12 43 43 H 1.09006 * 109.58797 * 113.79686 * 29 9 7 44 44 H 1.09002 * 109.58411 * 353.37238 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4361 2.0819 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6376 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3305 9 7 3.3137 -1.2403 -0.4174 10 6 4.2350 -2.2628 0.0968 11 6 4.8756 -2.9906 -1.0893 12 6 5.5296 -1.9655 -2.0187 13 1 6.2786 -1.3992 -1.4651 14 7 6.1719 -2.6605 -3.1371 15 6 7.4222 -3.1448 -3.0008 16 8 8.0174 -3.0044 -1.9498 17 6 8.0688 -3.8437 -4.1264 18 6 7.5170 -4.0807 -5.3694 19 7 8.4331 -4.7396 -6.0968 20 1 8.3226 -5.0361 -7.0136 21 7 9.5726 -4.9310 -5.3073 22 6 9.3667 -4.4017 -4.1330 23 6 10.3421 -4.3885 -2.9842 24 6 11.7684 -4.8669 -3.2630 25 6 10.8146 -5.7394 -2.4430 26 6 4.4630 -1.0094 -2.5575 27 1 4.9252 -0.2941 -3.2379 28 8 3.4634 -1.7546 -3.2558 29 6 3.8177 -0.2593 -1.3880 30 1 -0.4850 0.8400 -0.0004 31 1 5.0113 -1.7871 0.6961 32 1 3.6838 -2.9766 0.7090 33 1 5.6321 -3.6854 -0.7244 34 1 4.1094 -3.5407 -1.6355 35 1 5.6972 -2.7722 -3.9756 36 1 6.5306 -3.7875 -5.6974 37 1 10.2145 -3.5764 -2.2686 38 1 12.0011 -5.1916 -4.2773 39 1 12.5791 -4.3698 -2.7304 40 1 10.9983 -5.8158 -1.3713 41 1 10.4196 -6.6377 -2.9175 42 1 2.7526 -1.2113 -3.6230 43 1 4.5600 0.3799 -0.9098 44 1 2.9911 0.3489 -1.7556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090696880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:35 Heat of formation + Delta-G solvation = 15.487371 kcal Electronic energy + Delta-G solvation = -27392.435299 eV Core-core repulsion = 23539.909429 eV Total energy + Delta-G solvation = -3852.525870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47230 -40.79717 -39.29817 -37.98344 -36.57485 -35.64322 -34.03293 -32.49820 -32.17664 -31.20781 -30.44573 -26.92394 -25.03047 -24.75522 -24.02663 -23.28678 -23.08175 -21.19240 -21.04492 -20.30807 -19.55084 -19.01596 -17.69927 -17.42923 -17.21732 -16.58642 -16.55215 -16.15788 -15.99008 -15.69441 -15.60869 -15.35469 -15.10955 -14.77772 -14.44123 -14.22345 -14.02013 -13.89913 -13.36733 -13.00928 -12.92289 -12.62993 -12.43202 -12.39356 -12.16395 -12.14195 -11.96342 -11.93560 -11.83288 -11.39137 -11.32679 -10.88738 -10.83306 -10.56381 -10.29191 -10.07480 -9.70031 -8.89826 -8.12646 -5.43990 0.54470 1.00611 1.28559 1.45691 1.53454 1.77222 2.26870 2.42825 2.44296 3.04049 3.04678 3.32177 3.36706 3.45134 3.61493 3.78709 3.99794 4.02731 4.06589 4.14916 4.18367 4.28409 4.33791 4.40190 4.56739 4.63006 4.71767 4.76302 4.76893 4.79177 4.89216 4.95231 5.03244 5.07864 5.21412 5.26163 5.33878 5.46609 5.57916 5.88486 6.15631 6.25600 6.48192 6.74888 6.86205 6.97055 7.38603 7.63620 8.03963 9.07420 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.003033 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.697384 B = 9229.955312 C = 9679.664100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.315 1.315 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.123 4.123 12 C 0.170 3.830 13 H 0.084 0.916 14 N -0.704 5.704 15 C 0.590 3.410 16 O -0.580 6.580 17 C -0.315 4.315 18 C 0.137 3.863 19 N -0.445 5.445 20 H 0.462 0.538 21 N -0.319 5.319 22 C 0.151 3.849 23 C -0.105 4.105 24 C -0.154 4.154 25 C -0.156 4.156 26 C 0.096 3.904 27 H 0.084 0.916 28 O -0.560 6.560 29 C 0.089 3.911 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.412 0.588 36 H 0.230 0.770 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.388 0.612 43 H 0.040 0.960 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.320 -7.596 -15.920 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.227 4.227 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.244 1.244 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.065 0.935 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.163 4.163 12 C 0.064 3.936 13 H 0.102 0.898 14 N -0.355 5.355 15 C 0.379 3.621 16 O -0.461 6.461 17 C -0.330 4.330 18 C -0.018 4.018 19 N -0.151 5.151 20 H 0.311 0.689 21 N -0.142 5.142 22 C -0.016 4.016 23 C -0.125 4.125 24 C -0.191 4.191 25 C -0.194 4.194 26 C 0.034 3.966 27 H 0.102 0.898 28 O -0.367 6.367 29 C -0.037 4.037 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.237 0.763 43 H 0.058 0.942 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.814 -8.554 -15.769 27.478 hybrid contribution -1.617 1.576 0.026 2.258 sum 19.197 -6.977 -15.743 25.789 Atomic orbital electron populations 1.69969 1.07407 1.27141 1.55815 1.25840 0.95748 1.00628 1.00521 0.85970 0.78503 0.80250 0.78011 1.19072 1.24419 1.19077 1.18790 0.86544 0.93400 1.38261 0.93512 1.44269 1.07674 1.34219 1.47027 1.21019 0.91839 0.90714 0.94300 1.22087 0.99154 0.98026 0.97003 1.20689 0.92449 0.92844 0.87569 0.89805 1.45696 1.14780 1.58114 1.16944 1.17540 0.80752 0.77311 0.86457 1.90715 1.65039 1.60122 1.30179 1.20227 0.97855 1.17865 0.97025 1.23725 0.96691 0.91463 0.89872 1.46103 1.10142 1.43699 1.15120 0.68947 1.77034 1.07422 1.26140 1.03611 1.21583 0.93338 0.93802 0.92843 1.20495 0.94302 1.01066 0.96634 1.23064 0.91589 1.02573 1.01853 1.23011 1.02773 0.92739 1.00891 1.22385 0.88462 0.92786 0.92925 0.89816 1.86360 1.38084 1.38619 1.73605 1.22187 0.97823 0.92460 0.91213 0.92980 0.95000 0.92667 0.92061 0.92001 0.75096 0.75335 0.86167 0.88238 0.86748 0.87162 0.89090 0.76286 0.94232 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.71 13.97 21.65 0.30 -58.41 16 2 C -0.03 -1.86 5.23 84.86 0.44 -1.42 16 3 Si 0.94 44.60 24.35 68.60 1.67 46.27 16 4 H -0.26 -11.26 6.62 99.48 0.66 -10.60 16 5 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.27 -12.27 6.64 99.48 0.66 -11.61 16 7 C -0.24 -13.36 10.03 84.04 0.84 -12.52 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 9 N -0.61 -27.81 2.71 -699.08 -1.89 -29.71 16 10 C 0.15 5.90 6.52 86.36 0.56 6.46 16 11 C -0.12 -4.22 5.51 30.67 0.17 -4.05 16 12 C 0.17 5.12 2.20 45.02 0.10 5.22 16 13 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 14 N -0.70 -17.10 5.04 -445.68 -2.25 -19.34 16 15 C 0.59 16.25 7.78 86.66 0.67 16.93 16 16 O -0.58 -20.22 14.66 -4.03 -0.06 -20.28 16 17 C -0.31 -7.03 6.13 -20.15 -0.12 -7.16 16 18 C 0.14 1.75 11.52 84.28 0.97 2.72 16 19 N -0.44 -5.52 7.29 -56.31 -0.41 -5.93 16 20 H 0.46 2.01 8.96 -213.43 -1.91 0.10 16 21 N -0.32 -6.63 12.22 -46.68 -0.57 -7.20 16 22 C 0.15 3.63 6.79 43.52 0.30 3.92 16 23 C -0.10 -2.47 5.65 -11.54 -0.07 -2.53 16 24 C -0.15 -2.76 10.14 30.62 0.31 -2.45 16 25 C -0.16 -3.05 10.24 30.62 0.31 -2.73 16 26 C 0.10 2.84 3.38 30.67 0.10 2.94 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 O -0.56 -16.47 12.09 -148.98 -1.80 -18.27 16 29 C 0.09 3.45 3.84 86.36 0.33 3.79 16 30 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.27 7.61 -2.39 -0.02 2.26 16 35 H 0.41 7.58 7.18 -92.71 -0.67 6.91 16 36 H 0.23 0.78 7.46 -2.91 -0.02 0.76 16 37 H 0.12 3.29 6.73 -2.39 -0.02 3.27 16 38 H 0.10 1.79 7.90 -2.38 -0.02 1.77 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.39 9.85 9.08 -74.06 -0.67 9.18 16 43 H 0.04 1.51 7.08 -2.38 -0.02 1.49 16 44 H 0.07 2.77 4.50 -2.39 -0.01 2.76 16 Total: -1.00 -76.98 354.86 -2.36 -79.33 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -2.28 Total: 24.43 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.93 Total: 9.10 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -4.82 Total: -120.58 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.86 Total: -38.55 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -76.98 -2.36 -79.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090696880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.818 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds