Wall clock time and date at job start Fri Apr 10 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47402 * 269.99718 * 3 2 1 5 5 H 1.48503 * 109.47026 * 29.99834 * 3 2 1 6 6 H 1.48499 * 109.47096 * 149.99160 * 3 2 1 7 7 C 1.38812 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00334 * 163.08982 * 7 2 1 9 9 N 1.36937 * 119.99867 * 343.08803 * 7 2 1 10 10 C 1.46929 * 120.63166 * 151.83198 * 9 7 2 11 11 C 1.53190 * 108.77537 * 126.36986 * 10 9 7 12 12 C 1.53043 * 109.31469 * 54.63723 * 11 10 9 13 13 H 1.08989 * 109.46169 * 178.62836 * 12 11 10 14 14 N 1.46503 * 109.45767 * 58.65143 * 12 11 10 15 15 C 1.34779 * 119.99835 * 84.98164 * 14 12 11 16 16 O 1.21603 * 119.99940 * 359.97438 * 15 14 12 17 17 C 1.47426 * 119.99747 * 179.97438 * 15 14 12 18 18 C 1.38043 * 126.41721 * 0.02562 * 17 15 14 19 19 N 1.34262 * 107.41693 * 180.22539 * 18 17 15 20 20 H 0.97000 * 125.75102 * 179.76246 * 19 18 17 21 21 N 1.39934 * 108.48962 * 359.64481 * 19 18 17 22 22 C 1.30449 * 108.89742 * 0.36032 * 21 19 18 23 23 C 1.50702 * 125.98387 * 179.78200 * 22 21 19 24 24 C 1.52993 * 117.50198 * 8.75491 * 23 22 21 25 25 C 1.52993 * 117.50368 * 300.09113 * 23 22 21 26 26 C 1.53047 * 109.52526 * 298.64190 * 12 11 10 27 27 H 1.08998 * 109.49475 * 301.40473 * 26 12 11 28 28 O 1.42898 * 109.49612 * 181.30830 * 26 12 11 29 29 C 1.46931 * 120.63013 * 331.81121 * 9 7 2 30 30 H 0.96998 * 120.00068 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58677 * 6.57969 * 10 9 7 32 32 H 1.09001 * 109.58476 * 246.15457 * 10 9 7 33 33 H 1.08995 * 109.49769 * 294.68325 * 11 10 9 34 34 H 1.09004 * 109.49785 * 174.58346 * 11 10 9 35 35 H 0.97004 * 120.00122 * 264.96716 * 14 12 11 36 36 H 1.07996 * 126.29026 * 359.95764 * 18 17 15 37 37 H 1.09001 * 115.54744 * 154.42111 * 23 22 21 38 38 H 1.09003 * 117.49832 * 359.97438 * 24 23 22 39 39 H 1.09000 * 117.50280 * 145.01976 * 24 23 22 40 40 H 1.08994 * 117.50384 * 214.98045 * 25 23 22 41 41 H 1.09000 * 117.49941 * 359.97438 * 25 23 22 42 42 H 0.96703 * 113.99631 * 179.97438 * 28 26 12 43 43 H 1.09002 * 109.58701 * 353.41056 * 29 9 7 44 44 H 1.08998 * 109.58528 * 113.70331 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3700 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1979 11 6 2.0682 -4.6169 0.9652 12 6 0.8131 -4.7006 1.8370 13 1 0.9830 -5.4045 2.6515 14 7 -0.3162 -5.1584 1.0237 15 6 -0.5178 -6.4771 0.8321 16 8 0.2380 -7.2869 1.3337 17 6 -1.6546 -6.9378 0.0142 18 6 -2.5889 -6.1392 -0.6142 19 7 -3.4517 -6.9510 -1.2459 20 1 -4.2175 -6.6672 -1.7693 21 7 -3.0583 -8.2755 -1.0243 22 6 -1.9917 -8.2794 -0.2733 23 6 -1.2494 -9.5009 0.2042 24 6 -1.6580 -10.8518 -0.3866 25 6 -2.0212 -10.5072 1.0599 26 6 0.4984 -3.3186 2.4145 27 1 1.3482 -2.9667 2.9994 28 8 -0.6558 -3.4036 3.2527 29 6 0.2263 -2.3400 1.2681 30 1 -0.4850 0.8400 -0.0004 31 1 2.7345 -3.5134 -0.7647 32 1 1.0402 -4.0610 -0.8482 33 1 2.9032 -4.2527 1.5637 34 1 2.3052 -5.6059 0.5729 35 1 -0.9191 -4.5123 0.6234 36 1 -2.6224 -5.0599 -0.5968 37 1 -0.1944 -9.3502 0.4331 38 1 -2.4641 -10.8571 -1.1203 39 1 -0.8720 -11.5900 -0.5458 40 1 -1.4741 -11.0188 1.8517 41 1 -3.0659 -10.2855 1.2781 42 1 -0.9133 -2.5622 3.6539 43 1 0.0993 -1.3343 1.6687 44 1 -0.6773 -2.6387 0.7367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090696881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:38 Heat of formation + Delta-G solvation = 13.398836 kcal Electronic energy + Delta-G solvation = -27724.072249 eV Core-core repulsion = 23871.455813 eV Total energy + Delta-G solvation = -3852.616436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47945 -40.84820 -39.03365 -37.96495 -36.81264 -35.56676 -33.72599 -32.44857 -31.92456 -30.77975 -30.19494 -27.16864 -25.02368 -24.58180 -23.78706 -23.40084 -23.21737 -21.49837 -20.41533 -20.05654 -19.54601 -18.67248 -18.03571 -17.58915 -16.76990 -16.64115 -16.41539 -16.18924 -15.82395 -15.63145 -15.51266 -15.29626 -15.03750 -14.78424 -14.30163 -14.05615 -13.79638 -13.48329 -13.21455 -12.93181 -12.83257 -12.63739 -12.62752 -12.40571 -12.19210 -12.14659 -11.95171 -11.92078 -11.79432 -11.36348 -11.20203 -10.92392 -10.70443 -10.55294 -10.28893 -10.05390 -9.68850 -8.66482 -7.87769 -5.32465 0.52193 1.01700 1.48428 1.52049 1.59898 1.75524 2.35726 2.46536 2.52084 3.05940 3.18684 3.30044 3.38303 3.61372 3.70605 3.97094 4.03532 4.06468 4.17513 4.21097 4.31665 4.34991 4.40952 4.42229 4.51702 4.66531 4.77176 4.77831 4.95141 4.98476 5.03644 5.13469 5.21036 5.23258 5.27926 5.35311 5.37102 5.62888 5.64765 5.68881 6.22383 6.37996 6.47286 6.72781 6.87568 7.15792 7.38624 7.83372 8.35073 9.17645 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003301 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.352356 B = 8479.313231 C = 8836.733026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.040 4.040 3 Si 0.960 3.040 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.132 4.132 12 C 0.171 3.829 13 H 0.073 0.927 14 N -0.699 5.699 15 C 0.592 3.408 16 O -0.580 6.580 17 C -0.312 4.312 18 C 0.130 3.870 19 N -0.444 5.444 20 H 0.461 0.539 21 N -0.315 5.315 22 C 0.153 3.847 23 C -0.105 4.105 24 C -0.153 4.153 25 C -0.153 4.153 26 C 0.084 3.916 27 H 0.060 0.940 28 O -0.573 6.573 29 C 0.158 3.842 30 H 0.251 0.749 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.215 0.785 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.391 0.609 43 H 0.064 0.936 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -13.131 0.648 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.172 4.172 12 C 0.066 3.934 13 H 0.092 0.908 14 N -0.350 5.350 15 C 0.381 3.619 16 O -0.461 6.461 17 C -0.327 4.327 18 C -0.024 4.024 19 N -0.150 5.150 20 H 0.310 0.690 21 N -0.137 5.137 22 C -0.014 4.014 23 C -0.126 4.126 24 C -0.190 4.190 25 C -0.191 4.191 26 C 0.023 3.977 27 H 0.078 0.922 28 O -0.379 6.379 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.239 0.761 36 H 0.231 0.769 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.240 0.760 43 H 0.083 0.917 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.998 -14.879 0.190 16.443 hybrid contribution 0.280 2.909 0.014 2.922 sum -6.719 -11.970 0.204 13.728 Atomic orbital electron populations 1.70113 1.06199 1.25879 1.54953 1.25650 0.96041 1.00937 1.01036 0.85393 0.78205 0.80097 0.77398 1.21532 1.21811 1.19904 1.19448 0.92878 0.85836 1.41309 0.91779 1.44150 1.35961 1.02165 1.50350 1.20957 0.97592 0.85529 0.93694 1.22251 0.96819 0.99766 0.98337 1.20669 0.86178 0.93924 0.92655 0.90845 1.45721 1.30406 1.06418 1.52453 1.17448 0.83353 0.81963 0.79115 1.90665 1.48783 1.54383 1.52298 1.20266 1.04045 0.93716 1.14632 1.23570 0.88780 0.98918 0.91180 1.46070 1.24778 1.03458 1.40724 0.69039 1.76997 1.16358 0.97978 1.22403 1.21613 0.92334 0.93900 0.93549 1.20485 0.99104 0.86066 1.06895 1.23070 1.03801 0.95828 0.96299 1.23016 1.00495 1.00651 0.94934 1.22593 0.88138 0.95149 0.91807 0.92171 1.86408 1.47614 1.38137 1.65782 1.21203 0.88695 0.97760 0.89159 0.93976 0.92768 0.96262 0.90803 0.91125 0.76083 0.76885 0.86077 0.88350 0.86533 0.86848 0.89121 0.76020 0.91721 0.96610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.56 11.20 21.65 0.24 -49.32 16 2 C -0.04 -2.08 4.92 84.86 0.42 -1.67 16 3 Si 0.96 42.06 29.59 68.60 2.03 44.09 16 4 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -13.51 9.58 84.03 0.81 -12.71 16 8 H 0.06 3.25 7.88 -2.91 -0.02 3.22 16 9 N -0.60 -27.39 2.99 -699.13 -2.09 -29.49 16 10 C 0.15 5.80 6.26 86.36 0.54 6.34 16 11 C -0.13 -4.54 5.77 30.67 0.18 -4.36 16 12 C 0.17 5.88 2.47 45.02 0.11 6.00 16 13 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 14 N -0.70 -22.61 4.14 -445.66 -1.85 -24.46 16 15 C 0.59 19.96 7.78 86.66 0.67 20.63 16 16 O -0.58 -22.48 14.66 -4.04 -0.06 -22.54 16 17 C -0.31 -9.01 6.13 -20.15 -0.12 -9.13 16 18 C 0.13 2.77 11.52 84.28 0.97 3.74 16 19 N -0.44 -8.43 7.29 -56.32 -0.41 -8.84 16 20 H 0.46 5.03 8.96 -213.43 -1.91 3.12 16 21 N -0.31 -8.00 12.22 -46.68 -0.57 -8.57 16 22 C 0.15 4.36 6.80 43.51 0.30 4.66 16 23 C -0.11 -2.78 5.65 -11.54 -0.07 -2.85 16 24 C -0.15 -3.07 10.14 30.62 0.31 -2.76 16 25 C -0.15 -3.25 10.24 30.61 0.31 -2.94 16 26 C 0.08 2.95 3.36 30.67 0.10 3.05 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 28 O -0.57 -18.13 13.21 -148.98 -1.97 -20.10 16 29 C 0.16 6.62 4.63 86.35 0.40 7.02 16 30 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 31 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 32 H 0.02 0.77 7.74 -2.39 -0.02 0.75 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.40 12.42 5.79 -92.71 -0.54 11.88 16 36 H 0.21 3.30 7.46 -2.91 -0.02 3.28 16 37 H 0.12 3.63 6.73 -2.39 -0.02 3.62 16 38 H 0.10 2.01 7.90 -2.39 -0.02 1.99 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.39 9.68 9.08 -74.06 -0.67 9.00 16 43 H 0.06 3.08 6.06 -2.39 -0.01 3.06 16 44 H 0.02 0.68 6.65 -2.39 -0.02 0.67 16 Total: -1.00 -66.88 358.77 -1.80 -68.68 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -2.06 Total: 35.50 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 4.93 Total: 15.03 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -4.68 Total: -120.67 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.03 Total: -42.64 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.88 -1.80 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090696881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.081 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds