Wall clock time and date at job start Fri Apr 10 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00163 * 2 1 4 4 H 1.48498 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47214 * 300.00055 * 3 2 1 6 6 H 1.48502 * 109.47327 * 60.00235 * 3 2 1 7 7 C 1.38819 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99434 * 197.36606 * 7 2 1 9 9 N 1.36934 * 120.00113 * 17.36949 * 7 2 1 10 10 C 1.46927 * 120.62686 * 207.67206 * 9 7 2 11 11 C 1.53190 * 108.77495 * 233.61127 * 10 9 7 12 12 C 1.53040 * 109.31342 * 305.36740 * 11 10 9 13 13 H 1.08996 * 109.46285 * 301.34660 * 12 11 10 14 14 N 1.46507 * 109.46191 * 181.38438 * 12 11 10 15 15 C 1.34779 * 119.99675 * 84.93580 * 14 12 11 16 16 O 1.21600 * 119.99896 * 359.97438 * 15 14 12 17 17 C 1.47431 * 119.99682 * 180.02562 * 15 14 12 18 18 C 1.38039 * 126.41527 * 0.02562 * 17 15 14 19 19 N 1.34262 * 107.41599 * 179.97438 * 18 17 15 20 20 H 0.97000 * 125.75542 * 180.02562 * 19 18 17 21 21 N 1.39930 * 108.49170 * 0.02562 * 19 18 17 22 22 C 1.30448 * 108.89709 * 359.74806 * 21 19 18 23 23 C 1.50704 * 125.99108 * 180.26294 * 22 21 19 24 24 C 1.53003 * 117.49592 * 8.89108 * 23 22 21 25 25 C 1.53004 * 117.49734 * 300.23601 * 23 22 21 26 26 C 1.53045 * 109.53796 * 61.36594 * 12 11 10 27 27 H 1.08998 * 109.52246 * 58.60516 * 26 12 11 28 28 O 1.42903 * 109.49906 * 178.68447 * 26 12 11 29 29 C 1.46927 * 120.63197 * 27.67711 * 9 7 2 30 30 H 0.97006 * 119.99875 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58463 * 113.82905 * 10 9 7 32 32 H 1.08999 * 109.70737 * 353.46678 * 10 9 7 33 33 H 1.08998 * 109.50015 * 185.41970 * 11 10 9 34 34 H 1.08996 * 109.49989 * 65.31811 * 11 10 9 35 35 H 0.96995 * 119.99834 * 264.93028 * 14 12 11 36 36 H 1.07999 * 126.29429 * 359.97438 * 18 17 15 37 37 H 1.08999 * 115.55241 * 154.56387 * 23 22 21 38 38 H 1.09005 * 117.49927 * 0.02562 * 24 23 22 39 39 H 1.09004 * 117.49565 * 145.01671 * 24 23 22 40 40 H 1.09003 * 117.49794 * 214.97633 * 25 23 22 41 41 H 1.08996 * 117.49886 * 359.97156 * 25 23 22 42 42 H 0.96694 * 114.00474 * 179.83876 * 28 26 12 43 43 H 1.09002 * 109.58682 * 6.60443 * 29 9 7 44 44 H 1.08995 * 109.58414 * 246.17801 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3722 -2.3609 -0.3551 10 6 1.8193 -3.6549 0.1784 11 6 2.0746 -4.6092 -0.9925 12 6 0.8191 -4.6884 -1.8640 13 1 -0.0201 -5.0355 -1.2612 14 7 1.0485 -5.6257 -2.9664 15 6 0.8482 -6.9456 -2.7814 16 8 0.4775 -7.3585 -1.6993 17 6 1.0795 -7.8889 -3.8906 18 6 1.4999 -7.5674 -5.1655 19 7 1.5849 -8.7125 -5.8613 20 1 1.8567 -8.7931 -6.7889 21 7 1.2152 -9.7699 -5.0227 22 6 0.9173 -9.2917 -3.8461 23 6 0.4753 -10.0946 -2.6499 24 6 0.5608 -11.6189 -2.7514 25 6 -0.8028 -10.9243 -2.7890 26 6 0.5012 -3.3028 -2.4307 27 1 1.3495 -2.9443 -3.0137 28 8 -0.6534 -3.3837 -3.2689 29 6 0.2279 -2.3337 -1.2762 30 1 -0.4850 0.8401 0.0004 31 1 1.0468 -4.0697 0.8259 32 1 2.7393 -3.5200 0.7471 33 1 2.3138 -5.6007 -0.6082 34 1 2.9085 -4.2386 -1.5887 35 1 1.3445 -5.2963 -3.8294 36 1 1.7200 -6.5768 -5.5353 37 1 0.6787 -9.6427 -1.6791 38 1 0.9372 -12.0409 -3.6833 39 1 0.8202 -12.1697 -1.8472 40 1 -1.4399 -11.0185 -1.9097 41 1 -1.3240 -10.8890 -3.7456 42 1 -0.9147 -2.5394 -3.6612 43 1 0.0986 -1.3251 -1.6687 44 1 -0.6743 -2.6407 -0.7472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090696882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:41 Heat of formation + Delta-G solvation = 34.882338 kcal Electronic energy + Delta-G solvation = -27190.958061 eV Core-core repulsion = 23339.273219 eV Total energy + Delta-G solvation = -3851.684841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60542 -39.35111 -37.67704 -37.12362 -35.26181 -34.24973 -32.26482 -31.58816 -30.66490 -29.18108 -28.74077 -25.26188 -24.15060 -23.31014 -22.45250 -22.24094 -21.62997 -19.96605 -19.66638 -19.34008 -18.44913 -17.00369 -16.57294 -16.25639 -15.77568 -15.63579 -15.21148 -14.84653 -14.76087 -14.13569 -14.01804 -13.79587 -13.65570 -13.25103 -13.09956 -12.65366 -12.17625 -12.03761 -11.94589 -11.65814 -11.63532 -11.34141 -11.20548 -11.08001 -10.85404 -10.76404 -10.46760 -10.38670 -10.18992 -10.01091 -9.77244 -9.49937 -9.46071 -9.31189 -8.98108 -8.65252 -8.49928 -6.78149 -5.87506 -3.30617 1.35287 1.97545 2.45943 3.31036 3.40076 3.42026 3.49616 3.56443 3.91984 4.20292 4.40776 4.43118 4.60825 4.73206 4.91762 4.98351 5.21334 5.27380 5.32517 5.42700 5.48525 5.53766 5.56473 5.63257 5.75578 5.92991 6.03281 6.05013 6.10287 6.14936 6.23396 6.28084 6.48507 6.52244 6.72696 6.84803 6.91787 6.93769 7.12826 7.33042 7.46263 7.72086 7.85674 8.09924 8.35742 8.56811 9.11085 9.74071 10.30349 11.20866 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.002814 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.662498 B = 9948.270024 C =10286.556312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.165 3.835 13 H 0.089 0.911 14 N -0.714 5.714 15 C 0.591 3.409 16 O -0.542 6.542 17 C -0.274 4.274 18 C 0.102 3.898 19 N -0.463 5.463 20 H 0.443 0.557 21 N -0.301 5.301 22 C 0.165 3.835 23 C -0.082 4.082 24 C -0.170 4.170 25 C -0.159 4.159 26 C 0.072 3.928 27 H 0.050 0.950 28 O -0.573 6.573 29 C 0.148 3.852 30 H 0.254 0.746 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.392 0.608 36 H 0.186 0.814 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.375 0.625 43 H 0.093 0.907 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -15.871 -12.665 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.061 3.939 13 H 0.107 0.893 14 N -0.363 5.363 15 C 0.377 3.623 16 O -0.420 6.420 17 C -0.289 4.289 18 C -0.050 4.050 19 N -0.167 5.167 20 H 0.288 0.712 21 N -0.123 5.123 22 C -0.002 4.002 23 C -0.102 4.102 24 C -0.208 4.208 25 C -0.197 4.197 26 C 0.011 3.989 27 H 0.068 0.932 28 O -0.377 6.377 29 C 0.021 3.979 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.203 0.797 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.222 0.778 43 H 0.111 0.889 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.241 -17.681 -12.401 21.712 hybrid contribution 0.645 2.592 -0.802 2.789 sum 2.886 -15.089 -13.202 20.256 Atomic orbital electron populations 1.70045 1.05249 1.25546 1.53725 1.25077 0.95314 0.98537 1.00777 0.86217 0.79395 0.83812 0.77329 1.20202 1.21562 1.21638 1.19250 0.92868 0.84659 1.41583 0.91325 1.44020 1.35654 1.01796 1.49876 1.20942 0.98221 0.86284 0.92766 1.22412 0.96663 1.00257 0.98585 1.20963 0.98634 0.86903 0.87422 0.89325 1.45919 1.69014 1.06060 1.15285 1.17184 0.76930 0.81560 0.86594 1.90730 1.47291 1.77802 1.26165 1.20361 1.18988 0.94283 0.95220 1.23164 0.97149 0.92660 0.92052 1.46032 1.52993 1.04258 1.13465 0.71243 1.77073 1.23289 1.10110 1.01859 1.21449 0.94889 0.91370 0.92479 1.20551 1.02781 0.91258 0.95577 1.23024 1.00519 0.93552 1.03657 1.22965 0.90566 1.02708 1.03478 1.22979 0.86958 0.95575 0.93356 0.93165 1.86425 1.48360 1.36435 1.66482 1.21415 0.89826 0.98218 0.88428 0.93556 0.95797 0.92161 0.91692 0.92134 0.77512 0.79701 0.84110 0.88262 0.88279 0.87982 0.88887 0.77846 0.88865 0.95215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 11.19 55.49 0.62 -24.64 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.71 9.59 -15.06 -0.14 -6.85 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16 10 C 0.14 3.02 6.51 -3.71 -0.02 2.99 16 11 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 12 C 0.16 2.92 2.12 -67.88 -0.14 2.78 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 N -0.71 -10.49 4.91 -54.83 -0.27 -10.76 16 15 C 0.59 9.34 7.78 -12.52 -0.10 9.24 16 16 O -0.54 -10.32 14.66 5.28 0.08 -10.24 16 17 C -0.27 -3.58 6.13 -105.07 -0.64 -4.23 16 18 C 0.10 0.92 11.52 -16.56 -0.19 0.73 16 19 N -0.46 -3.92 7.29 30.85 0.22 -3.69 16 20 H 0.44 2.02 8.96 -182.73 -1.64 0.38 16 21 N -0.30 -3.60 12.22 33.90 0.41 -3.19 16 22 C 0.17 2.21 6.79 -82.02 -0.56 1.65 16 23 C -0.08 -1.03 5.65 -91.77 -0.52 -1.55 16 24 C -0.17 -1.72 10.14 -26.69 -0.27 -1.99 16 25 C -0.16 -1.70 10.24 -26.69 -0.27 -1.98 16 26 C 0.07 1.31 3.14 -26.61 -0.08 1.22 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 O -0.57 -9.48 13.16 -35.23 -0.46 -9.95 16 29 C 0.15 3.37 4.93 -3.71 -0.02 3.35 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.39 4.62 7.52 -40.82 -0.31 4.31 16 36 H 0.19 0.93 7.46 -52.49 -0.39 0.54 16 37 H 0.14 1.99 6.73 -51.93 -0.35 1.64 16 38 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.37 4.94 9.08 45.56 0.41 5.36 16 43 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.59 362.98 -9.41 -43.00 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.73 Total: 10.18 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.20 Total: 2.71 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.47 Total: -57.03 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.39 Total: -20.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.59 -9.41 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090696882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.879 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds