Wall clock time and date at job start Fri Apr 10 2020 18:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47112 * 270.00281 * 3 2 1 5 5 H 1.48493 * 109.47028 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46783 * 150.00214 * 3 2 1 7 7 C 1.38811 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99771 * 197.36142 * 7 2 1 9 9 N 1.36934 * 120.00155 * 17.35466 * 7 2 1 10 10 C 1.46928 * 120.63125 * 207.66979 * 9 7 2 11 11 C 1.53194 * 108.77583 * 233.63215 * 10 9 7 12 12 C 1.53044 * 109.31205 * 305.36770 * 11 10 9 13 13 H 1.09005 * 109.44773 * 301.34516 * 12 11 10 14 14 N 1.46499 * 109.45981 * 181.38737 * 12 11 10 15 15 C 1.34773 * 120.00371 * 84.92730 * 14 12 11 16 16 O 1.21280 * 120.00249 * 0.02562 * 15 14 12 17 17 C 1.50705 * 120.00291 * 179.97438 * 15 14 12 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47021 * 180.02562 * 18 17 15 20 20 C 1.38622 * 120.44838 * 124.71821 * 19 18 17 21 21 C 1.38572 * 118.40094 * 179.75906 * 20 19 18 22 22 N 1.32350 * 119.10281 * 0.51817 * 21 20 19 23 23 C 1.31780 * 120.81965 * 359.74676 * 22 21 20 24 24 N 1.31804 * 121.75485 * 359.97422 * 23 22 21 25 25 C 1.53033 * 109.54037 * 61.36425 * 12 11 10 26 26 H 1.08997 * 109.49935 * 58.58713 * 25 12 11 27 27 O 1.42900 * 109.49805 * 178.68380 * 25 12 11 28 28 C 1.46925 * 120.63196 * 27.69460 * 9 7 2 29 29 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58778 * 353.41855 * 10 9 7 31 31 H 1.09003 * 109.58773 * 113.70625 * 10 9 7 32 32 H 1.08998 * 109.50053 * 185.41410 * 11 10 9 33 33 H 1.08999 * 109.49670 * 65.31520 * 11 10 9 34 34 H 0.97005 * 120.00016 * 264.93358 * 14 12 11 35 35 H 1.09004 * 109.47104 * 59.99843 * 17 15 14 36 36 H 1.09004 * 109.46926 * 300.00709 * 17 15 14 37 37 H 1.08995 * 109.46909 * 299.99813 * 18 17 15 38 38 H 1.08996 * 109.47043 * 60.00433 * 18 17 15 39 39 H 1.08007 * 120.79823 * 0.02615 * 20 19 18 40 40 H 1.08001 * 120.45322 * 180.26671 * 21 20 19 41 41 H 1.08002 * 119.12165 * 179.97438 * 23 22 21 42 42 H 0.96703 * 113.99793 * 179.97438 * 27 25 12 43 43 H 1.09002 * 109.58535 * 6.58184 * 28 9 7 44 44 H 1.08996 * 109.59049 * 246.15500 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1786 11 6 2.0753 -4.6090 -0.9922 12 6 0.8198 -4.6885 -1.8639 13 1 -0.0192 -5.0358 -1.2609 14 7 1.0495 -5.6257 -2.9662 15 6 0.8495 -6.9456 -2.7812 16 8 0.4791 -7.3576 -1.7024 17 6 1.0852 -7.9097 -3.9154 18 6 0.7870 -9.3344 -3.4440 19 6 1.0233 -10.2984 -4.5780 20 6 1.8904 -11.3686 -4.4211 21 6 2.0723 -12.2316 -5.4898 22 7 1.4245 -12.0012 -6.6208 23 6 0.6119 -10.9701 -6.7354 24 7 0.4102 -10.1317 -5.7386 25 6 0.5016 -3.3030 -2.4305 26 1 1.3502 -2.9445 -3.0131 27 8 -0.6529 -3.3842 -3.2687 28 6 0.2281 -2.3340 -1.2759 29 1 -0.4850 0.8400 -0.0004 30 1 2.7402 -3.5177 0.7459 31 1 1.0483 -4.0686 0.8282 32 1 2.3148 -5.6005 -0.6080 33 1 2.9091 -4.2382 -1.5884 34 1 1.3455 -5.2963 -3.8292 35 1 2.1241 -7.8434 -4.2386 36 1 0.4289 -7.6580 -4.7485 37 1 1.4431 -9.5862 -2.6109 38 1 -0.2520 -9.4003 -3.1212 39 1 2.4083 -11.5283 -3.4869 40 1 2.7368 -13.0785 -5.4026 41 1 0.0975 -10.8078 -7.6711 42 1 -0.9130 -2.5402 -3.6626 43 1 0.0985 -1.3254 -1.6683 44 1 -0.6741 -2.6412 -0.7470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099855987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:29 Heat of formation + Delta-G solvation = -23.817910 kcal Electronic energy + Delta-G solvation = -26417.764997 eV Core-core repulsion = 22563.534722 eV Total energy + Delta-G solvation = -3854.230275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35882 -39.79173 -37.96337 -35.31341 -35.25790 -34.31013 -33.10523 -32.24963 -31.31052 -29.46866 -28.86500 -26.31405 -24.91491 -24.64485 -22.80007 -22.25199 -21.60040 -20.13072 -19.40181 -17.95419 -17.44478 -17.07260 -16.61953 -16.36686 -15.96531 -15.81066 -15.54106 -15.08451 -14.83194 -14.14123 -14.06152 -13.81867 -13.59999 -13.54370 -13.31976 -12.86988 -12.58769 -12.39766 -12.20259 -11.96885 -11.69131 -11.51271 -11.23663 -11.18379 -10.86226 -10.85517 -10.80223 -10.42608 -10.21177 -10.03742 -9.98165 -9.83742 -9.59115 -9.51173 -9.33197 -8.74968 -8.54651 -6.80633 -5.88906 -3.32592 0.55508 0.69225 2.81967 3.28054 3.32002 3.39014 3.40356 3.46222 3.71250 3.83160 4.12906 4.39295 4.54125 4.60149 4.68772 4.81991 4.90105 5.00335 5.16028 5.27188 5.34008 5.39767 5.44377 5.47641 5.59118 5.73170 5.80415 5.89685 5.98760 6.04261 6.08211 6.22540 6.42114 6.46498 6.64966 6.68299 6.84520 6.89042 7.10427 7.43916 7.69687 7.73456 7.74670 8.08628 8.33980 8.42918 9.09268 9.72080 10.28241 11.19460 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002215 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.510067 B =12636.144505 C =12908.318708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.162 3.838 13 H 0.087 0.913 14 N -0.715 5.715 15 C 0.512 3.488 16 O -0.547 6.547 17 C -0.131 4.131 18 C -0.057 4.057 19 C 0.182 3.818 20 C -0.224 4.224 21 C 0.148 3.852 22 N -0.529 5.529 23 C 0.296 3.704 24 N -0.517 5.517 25 C 0.072 3.928 26 H 0.051 0.949 27 O -0.573 6.573 28 C 0.148 3.852 29 H 0.255 0.745 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.196 0.804 42 H 0.376 0.624 43 H 0.094 0.906 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -19.050 -11.958 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.364 5.364 15 C 0.298 3.702 16 O -0.425 6.425 17 C -0.172 4.172 18 C -0.095 4.095 19 C 0.036 3.964 20 C -0.246 4.246 21 C -0.017 4.017 22 N -0.243 5.243 23 C 0.008 3.992 24 N -0.232 5.232 25 C 0.011 3.989 26 H 0.069 0.931 27 O -0.377 6.377 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.167 0.833 40 H 0.185 0.815 41 H 0.213 0.787 42 H 0.223 0.777 43 H 0.112 0.888 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.997 -19.671 -11.835 23.152 hybrid contribution 0.975 1.502 0.112 1.794 sum 3.972 -18.169 -11.724 21.985 Atomic orbital electron populations 1.70032 1.05260 1.25715 1.53573 1.25086 0.95332 0.98576 1.00689 0.86256 0.79158 0.83459 0.77702 1.21412 1.21692 1.20343 1.19217 0.92854 0.84654 1.41770 0.91330 1.44015 1.35659 1.01786 1.49871 1.20941 0.98232 0.86337 0.92720 1.22406 0.96686 1.00168 0.98613 1.20985 0.98592 0.87134 0.87525 0.89448 1.46110 1.68369 1.06401 1.15536 1.20484 0.77172 0.83150 0.89375 1.90699 1.46684 1.77969 1.27128 1.21541 1.04019 0.93253 0.98383 1.20373 1.04997 0.90915 0.93221 1.21829 0.88881 0.92830 0.92861 1.22853 1.01868 0.97632 1.02279 1.23246 0.93857 0.96942 0.87704 1.68425 1.08884 1.20841 1.26174 1.25016 0.91331 0.85462 0.97373 1.68271 1.24223 1.29853 1.00804 1.22971 0.87058 0.95502 0.93372 0.93098 1.86416 1.48319 1.36579 1.66414 1.21423 0.89806 0.98279 0.88416 0.93463 0.92141 0.95823 0.91841 0.92076 0.76945 0.89286 0.87822 0.88849 0.88300 0.83310 0.81505 0.78743 0.77746 0.88813 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 11.19 55.49 0.62 -24.74 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.28 2.99 -172.32 -0.52 -14.79 16 10 C 0.14 3.01 6.52 -3.71 -0.02 2.98 16 11 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 12 C 0.16 2.86 2.12 -67.89 -0.14 2.71 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 N -0.72 -10.26 4.92 -53.76 -0.26 -10.52 16 15 C 0.51 7.26 7.79 -10.98 -0.09 7.17 16 16 O -0.55 -9.73 15.64 5.56 0.09 -9.65 16 17 C -0.13 -1.32 5.57 -27.88 -0.16 -1.48 16 18 C -0.06 -0.54 4.94 -27.89 -0.14 -0.68 16 19 C 0.18 1.67 6.21 -82.24 -0.51 1.16 16 20 C -0.22 -1.62 9.80 -39.32 -0.39 -2.01 16 21 C 0.15 1.06 11.30 -17.21 -0.19 0.86 16 22 N -0.53 -4.79 10.44 -14.58 -0.15 -4.95 16 23 C 0.30 2.60 12.29 -92.16 -1.13 1.47 16 24 N -0.52 -5.19 10.04 -10.80 -0.11 -5.30 16 25 C 0.07 1.32 3.14 -26.61 -0.08 1.24 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 O -0.57 -9.66 13.16 -35.23 -0.46 -10.12 16 28 C 0.15 3.38 4.94 -3.71 -0.02 3.36 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.78 8.60 -40.82 -0.35 4.43 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.03 7.98 -51.93 -0.41 0.61 16 37 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.15 0.72 8.01 -52.48 -0.42 0.30 16 40 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.38 5.08 9.08 45.56 0.41 5.49 16 43 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -33.14 366.43 -9.21 -42.34 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.65 Total: 8.99 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -3.25 Total: 7.27 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.42 Total: -60.30 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.38 Total: -19.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.14 -9.21 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099855987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.527 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds