Wall clock time and date at job start Fri Apr 10 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47112 * 270.00281 * 3 2 1 5 5 H 1.48493 * 109.47028 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46783 * 150.00214 * 3 2 1 7 7 C 1.38811 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99771 * 197.36142 * 7 2 1 9 9 N 1.36934 * 120.00155 * 17.35466 * 7 2 1 10 10 C 1.46928 * 120.63125 * 207.66979 * 9 7 2 11 11 C 1.53194 * 108.77583 * 233.63215 * 10 9 7 12 12 C 1.53044 * 109.31205 * 305.36770 * 11 10 9 13 13 H 1.09005 * 109.44773 * 301.34516 * 12 11 10 14 14 N 1.46499 * 109.45981 * 181.38737 * 12 11 10 15 15 C 1.34773 * 120.00371 * 84.92730 * 14 12 11 16 16 O 1.21280 * 120.00249 * 0.02562 * 15 14 12 17 17 C 1.50705 * 120.00291 * 179.97438 * 15 14 12 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47021 * 180.02562 * 18 17 15 20 20 C 1.38622 * 120.44838 * 124.71821 * 19 18 17 21 21 C 1.38572 * 118.40094 * 179.75906 * 20 19 18 22 22 N 1.32350 * 119.10281 * 0.51817 * 21 20 19 23 23 C 1.31780 * 120.81965 * 359.74676 * 22 21 20 24 24 N 1.31804 * 121.75485 * 359.97422 * 23 22 21 25 25 C 1.53033 * 109.54037 * 61.36425 * 12 11 10 26 26 H 1.08997 * 109.49935 * 58.58713 * 25 12 11 27 27 O 1.42900 * 109.49805 * 178.68380 * 25 12 11 28 28 C 1.46925 * 120.63196 * 27.69460 * 9 7 2 29 29 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58778 * 353.41855 * 10 9 7 31 31 H 1.09003 * 109.58773 * 113.70625 * 10 9 7 32 32 H 1.08998 * 109.50053 * 185.41410 * 11 10 9 33 33 H 1.08999 * 109.49670 * 65.31520 * 11 10 9 34 34 H 0.97005 * 120.00016 * 264.93358 * 14 12 11 35 35 H 1.09004 * 109.47104 * 59.99843 * 17 15 14 36 36 H 1.09004 * 109.46926 * 300.00709 * 17 15 14 37 37 H 1.08995 * 109.46909 * 299.99813 * 18 17 15 38 38 H 1.08996 * 109.47043 * 60.00433 * 18 17 15 39 39 H 1.08007 * 120.79823 * 0.02615 * 20 19 18 40 40 H 1.08001 * 120.45322 * 180.26671 * 21 20 19 41 41 H 1.08002 * 119.12165 * 179.97438 * 23 22 21 42 42 H 0.96703 * 113.99793 * 179.97438 * 27 25 12 43 43 H 1.09002 * 109.58535 * 6.58184 * 28 9 7 44 44 H 1.08996 * 109.59049 * 246.15500 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1786 11 6 2.0753 -4.6090 -0.9922 12 6 0.8198 -4.6885 -1.8639 13 1 -0.0192 -5.0358 -1.2609 14 7 1.0495 -5.6257 -2.9662 15 6 0.8495 -6.9456 -2.7812 16 8 0.4791 -7.3576 -1.7024 17 6 1.0852 -7.9097 -3.9154 18 6 0.7870 -9.3344 -3.4440 19 6 1.0233 -10.2984 -4.5780 20 6 1.8904 -11.3686 -4.4211 21 6 2.0723 -12.2316 -5.4898 22 7 1.4245 -12.0012 -6.6208 23 6 0.6119 -10.9701 -6.7354 24 7 0.4102 -10.1317 -5.7386 25 6 0.5016 -3.3030 -2.4305 26 1 1.3502 -2.9445 -3.0131 27 8 -0.6529 -3.3842 -3.2687 28 6 0.2281 -2.3340 -1.2759 29 1 -0.4850 0.8400 -0.0004 30 1 2.7402 -3.5177 0.7459 31 1 1.0483 -4.0686 0.8282 32 1 2.3148 -5.6005 -0.6080 33 1 2.9091 -4.2382 -1.5884 34 1 1.3455 -5.2963 -3.8292 35 1 2.1241 -7.8434 -4.2386 36 1 0.4289 -7.6580 -4.7485 37 1 1.4431 -9.5862 -2.6109 38 1 -0.2520 -9.4003 -3.1212 39 1 2.4083 -11.5283 -3.4869 40 1 2.7368 -13.0785 -5.4026 41 1 0.0975 -10.8078 -7.6711 42 1 -0.9130 -2.5402 -3.6626 43 1 0.0985 -1.3254 -1.6683 44 1 -0.6741 -2.6412 -0.7470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099855987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:28 Heat of formation + Delta-G solvation = -48.213555 kcal Electronic energy + Delta-G solvation = -26418.822871 eV Core-core repulsion = 22563.534722 eV Total energy + Delta-G solvation = -3855.288150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96822 -41.05594 -39.44345 -36.89161 -36.09487 -35.68304 -33.99033 -33.70115 -32.21304 -31.06432 -30.48291 -27.52489 -26.32751 -25.27840 -24.18830 -23.58828 -22.88413 -21.39241 -20.92504 -18.98807 -18.54358 -18.19011 -18.09224 -17.48346 -17.22261 -16.71929 -16.47633 -16.31002 -15.85605 -15.61692 -15.47241 -15.13592 -14.86151 -14.70527 -14.50934 -14.14014 -13.82906 -13.71133 -13.44977 -13.34685 -13.16129 -13.03647 -12.66858 -12.53295 -12.28372 -12.08142 -12.00400 -11.87863 -11.77732 -11.53145 -11.38997 -11.01476 -10.80008 -10.60718 -10.50853 -10.19202 -10.00602 -8.77474 -7.91221 -5.38550 -0.02929 0.10757 1.48570 1.49703 1.58927 1.69109 2.18671 2.49216 2.82877 3.07041 3.12053 3.26505 3.32718 3.52631 3.63577 3.77909 3.92220 4.05861 4.10321 4.15893 4.21264 4.27213 4.31430 4.42432 4.45743 4.61533 4.65949 4.73757 4.79874 4.90497 4.95578 4.99456 5.04838 5.08704 5.15760 5.33560 5.47285 5.52626 5.56171 5.63354 6.06877 6.32618 6.61292 6.81781 7.09347 7.14087 7.30914 7.77042 8.29947 9.15413 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002215 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.510067 B =12636.144505 C =12908.318708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.140 3.860 11 C -0.121 4.121 12 C 0.169 3.831 13 H 0.054 0.946 14 N -0.707 5.707 15 C 0.511 3.489 16 O -0.585 6.585 17 C -0.117 4.117 18 C -0.052 4.052 19 C 0.167 3.833 20 C -0.219 4.219 21 C 0.145 3.855 22 N -0.547 5.547 23 C 0.286 3.714 24 N -0.539 5.539 25 C 0.092 3.908 26 H 0.066 0.934 27 O -0.574 6.574 28 C 0.156 3.844 29 H 0.252 0.748 30 H 0.067 0.933 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.412 0.588 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.174 0.826 40 H 0.199 0.801 41 H 0.215 0.785 42 H 0.391 0.609 43 H 0.070 0.930 44 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -20.241 -13.523 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.014 3.986 11 C -0.161 4.161 12 C 0.064 3.936 13 H 0.072 0.928 14 N -0.357 5.357 15 C 0.299 3.701 16 O -0.466 6.466 17 C -0.157 4.157 18 C -0.090 4.090 19 C 0.021 3.979 20 C -0.241 4.241 21 C -0.020 4.020 22 N -0.261 5.261 23 C -0.002 4.002 24 N -0.254 5.254 25 C 0.031 3.969 26 H 0.084 0.916 27 O -0.380 6.380 28 C 0.029 3.971 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.192 0.808 40 H 0.216 0.784 41 H 0.231 0.769 42 H 0.241 0.759 43 H 0.088 0.912 44 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 5.106 -20.876 -13.440 25.348 hybrid contribution 0.279 1.799 0.639 1.929 sum 5.385 -19.077 -12.802 23.597 Atomic orbital electron populations 1.70194 1.06741 1.26079 1.55117 1.25854 0.96040 1.01679 1.00959 0.85218 0.78013 0.79183 0.77725 1.20766 1.22517 1.19291 1.19559 0.93207 0.85584 1.41049 0.90884 1.44269 1.35664 1.02442 1.50595 1.21056 0.97835 0.85663 0.94003 1.22191 0.96932 0.99652 0.97358 1.20628 0.97470 0.87320 0.88210 0.92806 1.45922 1.68346 1.06148 1.15270 1.21189 0.75846 0.83220 0.89830 1.90689 1.48290 1.78525 1.29085 1.21478 1.05605 0.92196 0.96415 1.20284 1.04089 0.90870 0.93779 1.21823 0.89861 0.93625 0.92564 1.23113 1.01043 0.96585 1.03317 1.23823 0.93574 0.97574 0.87007 1.68481 1.09389 1.21036 1.27218 1.25427 0.91529 0.85340 0.97876 1.68248 1.24952 1.30743 1.01434 1.22558 0.87895 0.94700 0.91784 0.91623 1.86397 1.47852 1.37903 1.65885 1.21228 0.88324 0.98142 0.89401 0.93940 0.91455 0.97399 0.90818 0.90676 0.75172 0.86758 0.87335 0.88152 0.90146 0.80835 0.78400 0.76884 0.75928 0.91154 0.98843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.98 11.19 21.65 0.24 -53.74 16 2 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 3 Si 0.97 43.21 29.59 68.60 2.03 45.24 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 9 N -0.60 -29.67 2.99 -699.09 -2.09 -31.77 16 10 C 0.14 5.86 6.52 86.36 0.56 6.43 16 11 C -0.12 -4.13 5.65 30.67 0.17 -3.96 16 12 C 0.17 5.88 2.12 45.02 0.10 5.98 16 13 H 0.05 2.26 7.58 -2.38 -0.02 2.25 16 14 N -0.71 -19.03 4.92 -442.41 -2.18 -21.20 16 15 C 0.51 13.77 7.79 87.66 0.68 14.45 16 16 O -0.59 -20.64 15.64 -3.03 -0.05 -20.68 16 17 C -0.12 -2.11 5.57 29.85 0.17 -1.94 16 18 C -0.05 -0.92 4.94 29.85 0.15 -0.78 16 19 C 0.17 2.77 6.21 42.58 0.26 3.04 16 20 C -0.22 -2.61 9.80 22.44 0.22 -2.39 16 21 C 0.15 1.70 11.30 84.69 0.96 2.66 16 22 N -0.55 -8.89 10.44 -200.06 -2.09 -10.98 16 23 C 0.29 4.62 12.29 180.89 2.22 6.84 16 24 N -0.54 -10.08 10.04 -188.07 -1.89 -11.96 16 25 C 0.09 3.31 3.14 30.67 0.10 3.41 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 O -0.57 -18.85 13.16 -148.98 -1.96 -20.81 16 28 C 0.16 7.33 4.94 86.36 0.43 7.76 16 29 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.41 8.77 8.60 -92.70 -0.80 7.98 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.92 7.98 -2.38 -0.02 1.91 16 37 H 0.10 1.62 7.90 -2.39 -0.02 1.60 16 38 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.17 1.09 8.01 -2.91 -0.02 1.07 16 40 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.39 10.20 9.08 -74.06 -0.67 9.53 16 43 H 0.07 3.62 6.04 -2.39 -0.01 3.61 16 44 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -72.90 366.43 -1.18 -74.08 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.44 Total: 25.80 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 7.24 Total: 26.03 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -8.00 Total: -129.65 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -2.01 Total: -41.50 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.90 -1.18 -74.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099855987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.865 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds